Genetic and structural relationships of Salmonella O55 and Escherichia coli O103 O-antigens and identification of a 3-hydroxybutanoyltransferase gene involved in the synthesis of a Fuc3N derivative.

Abstract:

:O-antigen (O-polysaccharide), a part of the outer membrane of Gram-negative bacteria, is one of the most variable cell constituents and is related to bacterial virulence. O-antigen diversity is almost entirely due to genetic variations in O-antigen gene clusters. In this study, the O-polysaccharide structures of Salmonella O55 and Escherichia coli O103 were elucidated by chemical analysis and nuclear magnetic resonance spectroscopy. It was found that the O-polysaccharides have similar pentasaccharide O-units, which differ only in one sugar (glucose versus N-acetylglucosamine) and in the N-acyl group (acetyl versus 3-hydroxybutanoyl) on 3-amino-3,6-dideoxy-d-galactose (d-Fuc3N). The Salmonella O55 antigen gene cluster was sequenced and compared with the E. coli O103 antigen gene cluster reported previously. The two gene clusters were found to share high-level similarity (DNA identity ranges from 53% to 76%), except for two putative acyl transferase genes (fdtC in Salmonella O55 and fdhC in E. coli O103) which show no similarity. Replacement of the fdtC gene in Salmonella O55 with the fdhC gene from E. coli O103 resulted in production of a modified O-antigen, which contains a 3-hydroxybutanoyl derivative of Fuc3N in place of 3-acetamido-3,6-dideoxygalactose. This finding strongly suggests that fdhC is a 3-hydroxybutanoyltransferase gene. The sequence similarity level suggested that the O-antigen gene clusters of Salmonella O55 and E. coli O103 originate from a common ancestor, and this evolutionary relationship is discussed.

journal_name

Glycobiology

journal_title

Glycobiology

authors

Liu B,Perepelov AV,Svensson MV,Shevelev SD,Guo D,Senchenkova SN,Shashkov AS,Weintraub A,Feng L,Widmalm G,Knirel YA,Wang L

doi

10.1093/glycob/cwq015

subject

Has Abstract

pub_date

2010-06-01 00:00:00

pages

679-88

issue

6

eissn

0959-6658

issn

1460-2423

pii

cwq015

journal_volume

20

pub_type

杂志文章
  • Directed evolution of a remarkably efficient Kdnase from a bacterial neuraminidase.

    abstract::N-acetylneuraminic acid (5-acetamido-3,5-dideoxy-d-glycero-d-galacto-non-2-ulosonic acid), which is the principal sialic acid family member of the non-2-ulosonic acids and their various derivatives, is often found at the terminal position on the glycan chains that adorn all vertebrate cells. This terminal position com...

    journal_title:Glycobiology

    pub_type: 杂志文章

    doi:10.1093/glycob/cwz099

    authors: Shamsi Kazem Abadi S,Deen MC,Watson JN,Shidmoossavee FS,Bennet AJ

    更新日期:2020-04-20 00:00:00

  • Mucin-type O-glycosylation is controlled by short- and long-range glycopeptide substrate recognition that varies among members of the polypeptide GalNAc transferase family.

    abstract::A large family of UDP-GalNAc:polypeptide GalNAc transferases (ppGalNAc-Ts) initiates and defines sites of mucin-type Ser/Thr-O-GalNAc glycosylation. Family members have been classified into peptide- and glycopeptide-preferring subfamilies, although both families possess variable activities against glycopeptide substra...

    journal_title:Glycobiology

    pub_type: 杂志文章

    doi:10.1093/glycob/cwv108

    authors: Revoredo L,Wang S,Bennett EP,Clausen H,Moremen KW,Jarvis DL,Ten Hagen KG,Tabak LA,Gerken TA

    更新日期:2016-04-01 00:00:00

  • Prevention of the death of the rat axotomized hypoglossal nerve and promotion of its regeneration by bovine brain gangliosides.

    abstract::We have examined the time course of the neuronal death and regeneration of rat axotomized hypoglossal nerve with various conditions of the nerve resection, and established a useful system to measure neurotrophic activities of bioactive substances. In this system, neuronal death can be evaluated by counting surviving n...

    journal_title:Glycobiology

    pub_type: 杂志文章

    doi:10.1093/glycob/9.11.1247

    authors: Itoh M,Fukumoto S,Baba N,Kuga Y,Mizuno A,Furukawa K

    更新日期:1999-11-01 00:00:00

  • Sialyltransferase mRNA abundances in B cells are strictly controlled, correlated with cognate lectin binding, and differentially responsive to immune signaling in vitro.

    abstract::Mouse gene knockout studies have provided unimpeachable evidence of immune-relevant functions for several sialyltransferase enzymes including ST6Gal I, ST3Gal I, and ST3Gal IV. Such studies cannot, however, identify cellular mechanisms for regulating such activities. In this article we provide evidence that murine B l...

    journal_title:Glycobiology

    pub_type: 杂志文章

    doi:10.1093/glycob/cwh133

    authors: Marino JH,Hoffman M,Meyer M,Miller KS

    更新日期:2004-12-01 00:00:00

  • Leishmania adleri, a lizard parasite, expresses structurally similar glycoinositolphospholipids to mammalian Leishmania.

    abstract::Glycoinositolphospholipids (GIPLs) were isolated from promastigotes of the lizard parasites Leishmania adleri by phenol/water extraction. Phosphoinositol oligosaccharides were liberated by mild alkaline hydrolysis, purified by gel filtration and high pH anion exchange chromatography, and characterized by methylation a...

    journal_title:Glycobiology

    pub_type: 杂志文章

    doi:10.1093/glycob/7.5.687

    authors: Previato JO,Jones C,Wait R,Routier F,Saraiva E,Mendonça-Previato L

    更新日期:1997-07-01 00:00:00

  • Monosaccharide and oligosaccharide analysis of isoelectric focusing-separated and blotted granulocyte colony-stimulating factor glycoforms using high-pH anion-exchange chromatography with pulsed amperometric detection.

    abstract::In this study, a sensitive, straightforward technique is developed for the analysis of glycoprotein O-linked oligosaccharides. Specifically, O-linked oligosaccharides of granulocyte colony-stimulating factor (G-CSF) are analysed by separating charged glycoforms using isoelectric focusing, electroblotting to polyvinyli...

    journal_title:Glycobiology

    pub_type: 杂志文章

    doi:10.1093/glycob/4.4.459

    authors: Andersen DC,Goochee CF,Cooper G,Weitzhandler M

    更新日期:1994-08-01 00:00:00

  • The minimum information required for a glycomics experiment (MIRAGE) project: LC guidelines.

    abstract::The Minimum Information Required for a Glycomics Experiment (MIRAGE) is an initiative created by experts in the fields of glycobiology, glycoanalytics and glycoinformatics to design guidelines that improve the reporting and reproducibility of glycoanalytical methods. Previously, the MIRAGE Commission has published gui...

    journal_title:Glycobiology

    pub_type: 杂志文章

    doi:10.1093/glycob/cwz009

    authors: Campbell MP,Abrahams JL,Rapp E,Struwe WB,Costello CE,Novotny M,Ranzinger R,York WS,Kolarich D,Rudd PM,Kettner C

    更新日期:2019-05-01 00:00:00

  • Induction of sialyl-Lex expression by herpes simplex virus type 1 is dependent on viral immediate early RNA-activated transcription of host fucosyltransferase genes.

    abstract::We have previously shown that varicella-zoster virus (VZV) and cytomegalovirus (CMV) infection of diploid human fibroblasts (HEL) results in neo-expression of Lewis antigens sialyl Lewis x (sLe(x)) and Lewis y (Le(y)), respectively, after transcriptional activation of different combinations of dormant human fucosyltra...

    journal_title:Glycobiology

    pub_type: 杂志文章

    doi:10.1093/glycob/cwp057

    authors: Nyström K,Nordén R,Muylaert I,Elias P,Larson G,Olofsson S

    更新日期:2009-08-01 00:00:00

  • Structural changes in histone H2A by methylglyoxal generate highly immunogenic amorphous aggregates with implications in auto-immune response in cancer.

    abstract::The role of aberrant protein modifications in cancer and its diagnosis have emerged as a promising research field. Nonenzymatic glyco-oxidation of proteins under oxidative stress has been associated with carcinogenesis through advanced glycation end products (AGE)-receptors for advanced glycation end products (RAGE) a...

    journal_title:Glycobiology

    pub_type: 杂志文章

    doi:10.1093/glycob/cwv082

    authors: Mir AR,Moinuddin,Habib S,Khan F,Alam K,Ali A

    更新日期:2016-02-01 00:00:00

  • Human EDEM2, a novel homolog of family 47 glycosidases, is involved in ER-associated degradation of glycoproteins.

    abstract::In the endoplasmic reticulum (ER), misfolded proteins are retrotranslocated to the cytosol and degraded by the proteasome in a process known as ER-associated degradation (ERAD). Early in this pathway, a proposed lumenal ER lectin, EDEM, recognizes misfolded glycoproteins in the ER, disengages the nascent molecules fro...

    journal_title:Glycobiology

    pub_type: 杂志文章

    doi:10.1093/glycob/cwi014

    authors: Mast SW,Diekman K,Karaveg K,Davis A,Sifers RN,Moremen KW

    更新日期:2005-04-01 00:00:00

  • Crystal structure of mammalian alpha1,6-fucosyltransferase, FUT8.

    abstract::Mammalian alpha1,6-fucosyltransferase (FUT8) catalyses the transfer of a fucose residue from a donor substrate, guanosine 5'-diphosphate-beta-L-fucose to the reducing terminal N-acetylglucosamine (GlcNAc) of the core structure of an asparagine-linked oligosaccharide. Alpha1,6-fucosylation, also referred to as core fuc...

    journal_title:Glycobiology

    pub_type: 杂志文章

    doi:10.1093/glycob/cwl079

    authors: Ihara H,Ikeda Y,Toma S,Wang X,Suzuki T,Gu J,Miyoshi E,Tsukihara T,Honke K,Matsumoto A,Nakagawa A,Taniguchi N

    更新日期:2007-05-01 00:00:00

  • Structural characterization of the bovine tracheal chondroitin sulfate chains and binding of Plasmodium falciparum-infected erythrocytes.

    abstract::Sequestration of Plasmodium falciparum-infected red blood cells (IRBCs) in the human placenta is mediated by chondroitin 4-sulfate (C4S). A cytoadherence assay using chondroitin sulfate proteoglycans (CSPGs) is widely used for studying C4S-IRBC interactions. Bovine tracheal chondroitin sulfate A (CSA) preparation lack...

    journal_title:Glycobiology

    pub_type: 杂志文章

    doi:10.1093/glycob/cwh077

    authors: Muthusamy A,Achur RN,Valiyaveettil M,Madhunapantula SV,Kakizaki I,Bhavanandan VP,Gowda CD

    更新日期:2004-07-01 00:00:00

  • Sea urchin egg receptor for sperm: the oligosaccharide chains stabilize sperm binding.

    abstract::Sulfated O-linked oligosaccharides from the sea urchin egg receptor have been shown to bind to acrosome-reacted sperm and to inhibit fertilization in a competitive bioassay. However, the inhibitory activity of these isolated chains was much lower than that of a recombinant protein representing a portion of the extrace...

    journal_title:Glycobiology

    pub_type: 杂志文章

    doi:10.1093/glycob/6.1.59

    authors: Dhume ST,Stears RL,Lennarz WJ

    更新日期:1996-01-01 00:00:00

  • Lysosome-associated membrane protein 1 is a major SSEA-1-carrier protein in mouse neural stem cells.

    abstract::Stage-specific embryonic antigen-1 (SSEA-1) is a well-known carbohydrate antigenic epitope of undifferentiated cells, including neural stem cells (NSCs). However, the exact nature of the carrier proteins has not been fully characterized. Using proteomics analyses, we herein report that a lysosomal protein, LAMP-1, is ...

    journal_title:Glycobiology

    pub_type: 杂志文章

    doi:10.1093/glycob/cwq054

    authors: Yagi H,Yanagisawa M,Kato K,Yu RK

    更新日期:2010-08-01 00:00:00

  • Circulating blood and platelets supply glycosyltransferases that enable extrinsic extracellular glycosylation.

    abstract::Glycosyltransferases, usually residing within the intracellular secretory apparatus, also circulate in the blood. Many of these blood-borne glycosyltransferases are associated with pathological states, including malignancies and inflammatory conditions. Despite the potential for dynamic modifications of glycans on dis...

    journal_title:Glycobiology

    pub_type: 杂志文章

    doi:10.1093/glycob/cww108

    authors: Lee-Sundlov MM,Ashline DJ,Hanneman AJ,Grozovsky R,Reinhold VN,Hoffmeister KM,Lau JT

    更新日期:2017-01-01 00:00:00

  • Impaired hippocampal long-term potentiation and failure of learning in β1,4-N-acetylgalactosaminyltransferase gene transgenic mice.

    abstract::Gangliosides (sialic acid-containing glycosphingolipids) play important roles in many physiological functions, including synaptic plasticity in the hippocampus, which is considered as a cellular mechanism of learning and memory. In the present study, three types of synaptic plasticity, long-term potentiation (LTP), lo...

    journal_title:Glycobiology

    pub_type: 杂志文章

    doi:10.1093/glycob/cwr090

    authors: Ikarashi K,Fujiwara H,Yamazaki Y,Goto J,Kaneko K,Kato H,Fujii S,Sasaki H,Fukumoto S,Furukawa K,Waki H,Furukawa K

    更新日期:2011-10-01 00:00:00

  • Cloning, expression, purification, and characterization of the acid alpha-mannosidase from Trypanosoma cruzi.

    abstract::The acid alpha-mannosidase of Trypanosoma cruzi is a broad-specificity hydrolase involved in the catabolism of glycoconjugates, presumably in the digestive vacuole. We have cloned the alpha-mannosidase gene from a T.cruzi epimastigote genomic library. The alpha-mannosidase gene was determined to be single copy by Sout...

    journal_title:Glycobiology

    pub_type: 杂志文章

    doi:10.1093/glycob/8.12.1183

    authors: Vandersall-Nairn AS,Merkle RK,O'Brien K,Oeltmann TN,Moremen KW

    更新日期:1998-12-01 00:00:00

  • Expression regulation and function of heparan sulfate 6-O-endosulfatases in the spermatogonial stem cell niche.

    abstract::Glial cell line-derived neurotrophic factor (GDNF) is a heparan sulfate (HS)-binding factor. GDNF is produced by somatic Sertoli cells, where it signals to maintain spermatogonial stem cells (SSCs) and reproduction. Here, we investigate the roles of extracellular HS 6-O-endosulfatases (Sulfs), Sulf1 and Sulf2, in the ...

    journal_title:Glycobiology

    pub_type: 杂志文章

    doi:10.1093/glycob/cwq133

    authors: Langsdorf A,Schumacher V,Shi X,Tran T,Zaia J,Jain S,Taglienti M,Kreidberg JA,Fine A,Ai X

    更新日期:2011-02-01 00:00:00

  • Prevalence of the F-type lectin domain.

    abstract::F-type lectins are fucolectins with characteristic fucose and calcium-binding sequence motifs and a unique lectin fold (the "F-type" fold). F-type lectins are phylogenetically widespread with selective distribution. Several eukaryotic F-type lectins have been biochemically and structurally characterized, and the F-typ...

    journal_title:Glycobiology

    pub_type: 杂志文章

    doi:10.1093/glycob/cwv029

    authors: Bishnoi R,Khatri I,Subramanian S,Ramya TN

    更新日期:2015-08-01 00:00:00

  • Simultaneous quantification of glucosylceramide and galactosylceramide by normal-phase HPLC using O-phtalaldehyde derivatives prepared with sphingolipid ceramide N-deacylase.

    abstract::We report here a method of simultaneously quantifying glucosylceramide (GlcCer) and galactosylceramide (GalCer) by normal-phase HPLC using O-phtalaldehyde derivatives. Treatment with sphingolipid ceramide N-deacylase which converts the cerebrosides in the sample to their lyso-forms was followed by the quantitative lab...

    journal_title:Glycobiology

    pub_type: 杂志文章

    doi:10.1093/glycob/cwp047

    authors: Zama K,Hayashi Y,Ito S,Hirabayashi Y,Inoue T,Ohno K,Okino N,Ito M

    更新日期:2009-07-01 00:00:00

  • Incorporation of 15N from ammonium into the N-linked oligosaccharides of an immunoadhesin glycoprotein expressed in Chinese hamster ovary cells.

    abstract::Elevated ammonium concentrations in the medium of cultivated cells have been shown to increase the intracellular levels of uridine-5'-diphospho-N-acetylglucosamine (UDP-GlcNAc) and uridine-5'-diphospho-N-acetylgalactosamine (UDP-GalNAc; Ryll et al., 1994). These sugar nucleotides are substrates for glycosyltransferase...

    journal_title:Glycobiology

    pub_type: 杂志文章

    doi:10.1093/glycob/9.2.125

    authors: Gawlitzek M,Papac DI,Sliwkowski MB,Ryll T

    更新日期:1999-02-01 00:00:00

  • Peptides that mimic Candida albicans-derived beta-1,2-linked mannosides.

    abstract::Beta-1,2-linked mannosides from Candida albicans phosphopeptidomannan (PPM) bind to macrophages through a receptor independent from the macrophage alpha-linked mannose receptor and stimulate these cells to secrete immune mediators. Anti-beta-1,2-linked mannoside but not anti-alpha-linked mannoside antibodies produced ...

    journal_title:Glycobiology

    pub_type: 杂志文章

    doi:10.1093/glycob/11.8.693

    authors: Jouault T,Fradin C,Dzierszinski F,Borg-Von-Zepelin M,Tomavo S,Corman R,Trinel PA,Kerckaert JP,Poulain D

    更新日期:2001-08-01 00:00:00

  • Glycosylation and biological activity of CAMPATH-1H expressed in different cell lines and grown under different culture conditions.

    abstract::CAMPATH-1H (where CAMPATH is a trade mark of Wellcome group companies), a humanized IgG antibody used in the therapy of lymphoma, leukaemia and rheumatoid arthritis, has been expressed in Chinese hamster ovary, Y0 myeloma and NS0 myeloma cell lines. These engineered cell lines were grown under different culture condit...

    journal_title:Glycobiology

    pub_type: 杂志文章

    doi:10.1093/glycob/5.8.813

    authors: Lifely MR,Hale C,Boyce S,Keen MJ,Phillips J

    更新日期:1995-12-01 00:00:00

  • Production and characterization of a monoclonal antibody able to discriminate galectin-1 from galectin-2 and galectin-3.

    abstract::Antisera raised against galectin-1 exhibit crossreactivities with other galectins or related molecules. In order to overcome this problem, a monoclonal antibody to human brain galectin-1 was obtained by selecting clones without reactivity toward galectin-3. This mAb specifically bound galectin-1 of various animal orig...

    journal_title:Glycobiology

    pub_type: 杂志文章

    doi:10.1093/glycob/8.5.425

    authors: Cornillot JD,Pontet M,Dupuy C,Chadli A,Caron M,Joubert-Caron R,Bourin P,Bladier D

    更新日期:1998-05-01 00:00:00

  • Production of N-sulfated polysaccharides using yeast-expressed N-deacetylase/N-sulfotransferase-1 (NDST-1).

    abstract::Heparan sulfate/heparin N-deacetylase/N-sulfotransferase-1 (NDST-1) is a critical enzyme involved in heparan sulfate/heparin biosynthesis. This dual-function enzyme modifies the GlcNAc-GlcA disaccharide repeating sugar backbone to make N-sulfated heparosan. N-sulfation is an absolute requirement for the subsequent epi...

    journal_title:Glycobiology

    pub_type: 杂志文章

    doi:10.1093/glycob/cwh129

    authors: Saribaş AS,Mobasseri A,Pristatsky P,Chen X,Barthelson R,Hakes D,Wang J

    更新日期:2004-12-01 00:00:00

  • LC-MS and LC-MS/MS studies of incorporation of 34SO3 into glycosaminoglycan chains by sulfotransferases.

    abstract::The specificities of glycosaminoglycan (GAG) modification enzymes, particularly sulfotransferases, and the locations and concentrations of these enzymes in the Golgi apparatus give rise to the mature GAG polysaccharides that bind protein ligands. We studied the substrate specificities of sulfotransferases with a stabl...

    journal_title:Glycobiology

    pub_type: 杂志文章

    doi:10.1093/glycob/cwt033

    authors: Shi X,Shao C,Mao Y,Huang Y,Wu ZL,Zaia J

    更新日期:2013-08-01 00:00:00

  • Conformational behavior of hyaluronan in relation to its physical properties as probed by molecular modeling.

    abstract::Hyaluronan (HA) is a linear charged polysaccharide whose structure is made up of repeating disaccharide units. Apparently conflicting reports have been published about the nature of the helical structure of HA in the solid state. Recent developments in the field of molecular modeling of polysaccharides offer new oppor...

    journal_title:Glycobiology

    pub_type: 杂志文章

    doi:10.1093/glycob/10.6.587

    authors: Haxaire K,Braccini I,Milas M,Rinaudo M,Pérez S

    更新日期:2000-06-01 00:00:00

  • Influenza virus infection of desialylated cells.

    abstract::Sialic acid has long been considered to be the sole receptor for influenza virus. The viral hemagglutinin (HA) is known to bind cell surface sialic acid, and sialic acids on viral glyco-proteins are cleaved by the viral neuraminidase (NA) to promote efficient release of progeny virus particles. However, NWS-Mvi, a mut...

    journal_title:Glycobiology

    pub_type: 杂志文章

    doi:10.1093/glycob/10.7.649

    authors: Stray SJ,Cummings RD,Air GM

    更新日期:2000-07-01 00:00:00

  • In vitro oligosaccharide synthesis using intact yeast cells that display glycosyltransferases at the cell surface through cell wall-anchored protein Pir.

    abstract::A glycosyltransferase was fused to the yeast cell wall protein Pir, which forms the Pir1-4 protein family and is incorporated into the cell wall by an unknown linkage to be displayed at the yeast cell surface. We first expressed the PIR1-HA-gma12+ fusion, in which gma12+ encodes alpha-1,2-galactosyltransferase from th...

    journal_title:Glycobiology

    pub_type: 杂志文章

    doi:10.1093/glycob/cwg014

    authors: Abe H,Shimma Y,Jigami Y

    更新日期:2003-02-01 00:00:00

  • A novel sialylated N-acetylgalactosamine-containing oligosaccharide is the major complex-type structure present in Bowes melanoma tissue plasminogen activator.

    abstract::We have employed fast atom bombardment mass spectrometry (FAB-MS) to screen the N-linked oligosaccharides of Bowes melanoma tissue plasminogen activator (mt-PA), and recombinant t-PAs produced by Chinese hamster ovary cells (rt-PA) and by a gene-enriched melanoma cell line (rmt-PA). These studies have confirmed the pu...

    journal_title:Glycobiology

    pub_type: 杂志文章

    doi:10.1093/glycob/1.2.173

    authors: Chan AL,Morris HR,Panico M,Etienne AT,Rogers ME,Gaffney P,Creighton-Kempsford L,Dell A

    更新日期:1991-03-01 00:00:00