Abstract:
:Steady state flux balance analysis (FBA) for cellular metabolism is used, e.g., to seek information on the activity of the different pathways under equilibrium conditions, or as a basis for kinetic models. In metabolic models, the stoichiometry of the system, commonly completed with bounds on some of the variables, is used as the constraint in the search of a meaningful solution. As model complexity and number of constraints increase, deterministic approach to FBA is no longer viable: a multitude of very different solutions may exist, or the constraints may be in conflict, implying that no precise solution can be found. Moreover, the solution may become overly sensitive to parameter values defining the constraints. Bayesian FBA treats the unknowns as random variables and provides estimates of their probability density functions. This stochastic setting naturally represents the variability which can be expected to occur over a population and helps to circumvent the drawbacks of the classical approach, but its implementation can be quite tedious for users without background in statistical computations. This article presents a software package called Metabolica for performing Bayesian FBA for complex multi-compartment models and visualization of the results.
journal_name
Comput Methods Programs Biomedjournal_title
Computer methods and programs in biomedicineauthors
Heino J,Calvetti D,Somersalo Edoi
10.1016/j.cmpb.2009.07.007subject
Has Abstractpub_date
2010-02-01 00:00:00pages
151-67issue
2eissn
0169-2607issn
1872-7565pii
S0169-2607(09)00225-9journal_volume
97pub_type
杂志文章abstract::An outline of the Hokkaido University PACS (HU-PACS) and 10 months experience of its clinical use are reported. It is concluded that HU-PACS is a useful clinical tool, even though some points still remain to be improved. ...
journal_title:Computer methods and programs in biomedicine
pub_type: 杂志文章
doi:10.1016/0169-2607(91)90049-y
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journal_title:Computer methods and programs in biomedicine
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journal_title:Computer methods and programs in biomedicine
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journal_title:Computer methods and programs in biomedicine
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journal_title:Computer methods and programs in biomedicine
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journal_title:Computer methods and programs in biomedicine
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journal_title:Computer methods and programs in biomedicine
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journal_title:Computer methods and programs in biomedicine
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journal_title:Computer methods and programs in biomedicine
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journal_title:Computer methods and programs in biomedicine
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更新日期:1990-11-01 00:00:00
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journal_title:Computer methods and programs in biomedicine
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journal_title:Computer methods and programs in biomedicine
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doi:10.1016/j.cmpb.2017.02.006
更新日期:2017-04-01 00:00:00
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journal_title:Computer methods and programs in biomedicine
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journal_title:Computer methods and programs in biomedicine
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journal_title:Computer methods and programs in biomedicine
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journal_title:Computer methods and programs in biomedicine
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journal_title:Computer methods and programs in biomedicine
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journal_title:Computer methods and programs in biomedicine
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journal_title:Computer methods and programs in biomedicine
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journal_title:Computer methods and programs in biomedicine
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journal_title:Computer methods and programs in biomedicine
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