Abstract:
:Membrane proteins are embedded in a lipid bilayer and maintain strong interactions with lipid molecules. Tightly bound lipids are responsible for vertical positioning and integration of proteins in the membrane and for assembly of multisubunit complexes and occasionally act as substrates. In this work we present the lipidic sponge phase crystal structure of the reaction center from Blastochloris viridis to 1.86 A, which reveals lipid molecules interacting with the protein surface. A diacylglycerol molecule is bound, through a thioether bond, to the N-terminus of the tetraheme cytochrome c subunit. From the electron density recovered at the Q(B) site and the observed change in recombination kinetics in lipidic sponge phase-grown crystals, the mobile ubiquinone appears to be displaced by a monoolein molecule. A 36 A long electron density feature is observed at the interface of transmembrane helices belonging to the H- and M-subunits, probably arising from an unidentified lipid.
journal_name
Biochemistryjournal_title
Biochemistryauthors
Wöhri AB,Wahlgren WY,Malmerberg E,Johansson LC,Neutze R,Katona Gdoi
10.1021/bi900545esubject
Has Abstractpub_date
2009-10-20 00:00:00pages
9831-8issue
41eissn
0006-2960issn
1520-4995journal_volume
48pub_type
杂志文章相关文献
BIOCHEMISTRY文献大全abstract::Biochemical characterization of the inhibition mechanism of Deltalac-acetogenins synthesized in our laboratory indicated that they are a new type of inhibitor of bovine heart mitochondrial NADH-ubiquinone oxidoreductase (complex I) [Murai, M., et al. (2006) Biochemistry 45, 9778-9787]. To identify the binding site of ...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi100454b
更新日期:2010-06-15 00:00:00
abstract::The carboxy-terminal domain of the alpha subunit of Escherichia coli RNA polymerase, which is connected with the core part of RNA polymerase through a long flexible linker, plays decisive roles in transcription activation by directly interacting with a large number of transcription factors and upstream (UP) element DN...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi000020d
更新日期:2000-05-23 00:00:00
abstract::Multisite mutagenesis of single-chain and monomeric forms of human interleukin 5 (IL-5) was performed to investigate mechanistic features of receptor activation and the possibility of differentiating sites of activation from those for receptor interaction. The normally dimeric human IL-5 contains two domains, each con...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi001467p
更新日期:2000-12-05 00:00:00
abstract::The function of the GM2 activator protein is to act as a substrate-specific cofactor in the hydrolysis of GM2 ganglioside by beta-hexosaminidase A. Mutations in the gene encoding it result in the AB variant form of GM2 gangliosidosis. One such mutation, Cys138 Arg, results in the mutant protein being retained and degr...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi971211s
更新日期:1998-01-20 00:00:00
abstract::The product of yjeK in Escherichia coli is a homologue of lysine 2,3-aminomutase (LAM) from Clostridium subterminale SB4, and both enzymes catalyze the isomerization of (S)- but not (R)-alpha-lysine by radical mechanisms. The turnover number for LAM from E. coli is 5.0 min(-1), 0.1% of the value for clostridial LAM. T...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi061328t
更新日期:2006-10-24 00:00:00
abstract::Molecular chaperones facilitate the folding and assembly of proteins and inhibit their aberrant aggregation. They thus offer several opportunities for biomedical and biotechnological applications, as for example they can often prevent protein aggregation more effectively than other therapeutic molecules, including sma...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/acs.biochem.5b00459
更新日期:2015-08-18 00:00:00
abstract::Notwithstanding the relevance of their biological function, slow motions in proteins, beyond the microsecond range, are still poorly understood and often elusive. We propose that acrylamide quenching of Trp phosphorescence of deeply buried residues, when extended over the entire accessible range of lifetime measuremen...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi9009659
更新日期:2009-08-11 00:00:00
abstract::Suberyldicholine-induced ion translocation in the millisecond time region in acetylcholine receptor rich membrane vesicles prepared from the electric organ of Electrophorus electricus was investigated in eel Ringer's solution, pH 7.0, 1 degree C. A quench-flow technique with a time resolution of 5 ms was used to measu...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00294a041
更新日期:1983-12-06 00:00:00
abstract::The Escherichia coli Ada protein repairs methyl phosphotriesters in DNA by direct, irreversible methyl transfer to one of its own cysteine residues. The methyl-transfer process appears to be autocatalyzed by coordination of the acceptor residue, Cys-69, to a tightly bound zinc ion. Upon methyl transfer, Ada acquires t...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00214a003
更新日期:1993-12-28 00:00:00
abstract::The fidelity of the poliovirus RNA-dependent RNA polymerase (3D(pol)) plays a direct role in the genomic evolution and pathogenesis of the virus. A single site mutation (Gly64Ser) that is remote from the catalytic center results in a higher fidelity polymerase. NMR studies with [methyl-(13)C]methionine-labeled protein...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi100833r
更新日期:2010-11-02 00:00:00
abstract::The role of bacterial DnaJ protein as a cochaperone of DnaK is strongly appreciated. Although DnaJ unaccompanied by DnaK can bind unfolded as well as native substrate proteins, its role as an individual chaperone remains elusive. In this study, we demonstrate that DnaJ binds a model non-native substrate with a low nan...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi301543g
更新日期:2013-02-12 00:00:00
abstract::S-Adenosylmethionine decarboxylase, a pyruvoyl-containing decarboxylase, is inactivated in a time-dependent process under turnover conditions. The inactivation is dependent on the presence of both substrate and Mg2+, which is also required for enzyme activity. The rate of inactivation is dependent on the concentration...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00394a022
更新日期:1987-10-06 00:00:00
abstract::The O-linked protein glycosylation pathway in Neisseria gonorrhoeae is responsible for the synthesis of a complex oligosaccharide on undecaprenyl diphosphate and subsequent en bloc transfer of the glycan to serine residues of select periplasmic proteins. Protein glycosylation (pgl) genes have been annotated on the bas...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi2003372
更新日期:2011-06-07 00:00:00
abstract::The gene for the human substance P receptor (NK-1) was cloned using cDNA probes made by the polymerase chain reaction from primers based on the rat sequence. The gene spans 45-60 kb and is contained in five exons, with introns interrupting at sites homologous to those in the NK-2 receptor gene. Analysis of restriction...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00108a006
更新日期:1991-11-05 00:00:00
abstract::In this paper, we examined the posttranslational modifications (PTMs) of high-mobility group A1 (HMGA1) proteins in PC-3 human prostate cancer cells that are either treated or not treated with a histone deacetylase inhibitor, sodium butyrate. We found that, from a reversed-phase C4 column, the HMGA1a protein eluted in...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi060504v
更新日期:2006-06-13 00:00:00
abstract::Peroxynitrite-mediated oxidative chemistry is currently the subject of intense investigation owing to the toxic side effects associated with nitric oxide overproduction. Using direct electron spin resonance spectroscopy (ESR) at 37 degrees C, we observed that in human erythrocytes peroxynitrite induced a long-lived si...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi982311g
更新日期:1999-02-16 00:00:00
abstract::The expression of apoE mRNA in the adrenal gland is inversely correlated to steroidogenesis and directly correlated to the level of cholesteryl ester stores. To further investigate the relationship between apoE and cellular cholesterol homeostasis, several parameters of cholesterol metabolism in the murine Y1 adrenal ...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00183a007
更新日期:1994-05-03 00:00:00
abstract::From the larger set of 191 variants at all the variable contact positions in the turkey ovomucoid third domain, we selected a subset that consists of Asp, Glu, His, and Lys residues at eight of the nine contiguous P6-P3' positions (residues 13-21), the exception being P3-Cys16 which is involved in a conserved disulfid...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi0269512
更新日期:2003-03-18 00:00:00
abstract::The gamma subunits of the 7S nerve growth factor complex (7S NGF) display arginine esteropeptidase activity. By varying the conditions of electrophoresis in acrylamide gel, it has been demonstrated that the gamma-subunit fraction of 7S NGF contains five different proteins, in contrast to the three (gamma1, gamma2, and...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00652a016
更新日期:1976-04-06 00:00:00
abstract::We have studied the transient kinetics of electron transfer from a positively charged viologen analogue (propylene diquat), reduced by pulsed laser excitation of the deazariboflavin/EDTA system, to the net negatively charged ferredoxins from spinach and Clostridium pasteurianum. Spinach ferredoxin showed monophasic ki...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00440a050
更新日期:1989-07-11 00:00:00
abstract::The in vitro reaction of the vinyl chloride metabolite chloroacetaldehyde (CAA) with cytosine and adenine residues in ribo- and deoxyribopolynucleotides leads to the formation of the relatively stable hydrated etheno derivatives 3,N4-(N4-alpha-hydroxyethene)adenine (epsilon C . H2O) and 1,N6-(N6-alpha-hydroxyethene)cy...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00265a050
更新日期:1982-10-26 00:00:00
abstract::R67 dihydrofolate reductase (DHFR), which catalyzes the NADPH dependent reduction of dihydrofolate to tetrahydrofolate, belongs to a type II family of R-plasmid encoded DHFRs that confer resistance to the antibacterial drug trimethoprim. Crystal structure data reveals this enzyme is a homotetramer that possesses a sin...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi034643d
更新日期:2003-09-16 00:00:00
abstract::Cytochrome c oxidase contains four redox-active metal centers: two heme irons, cytochromes a and a3, and two copper ions, CuA and CuB. Due to the paucity of spectroscopic signatures for both copper sites in cytochrome c oxidase, the ligands and structures for these sites have remained ambiguous. The specific depletion...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00382a005
更新日期:1987-04-21 00:00:00
abstract::Ca2+-activated Z-disk-removing activity in the P0-40 crude muscle extracts described by Busch et al. (Busch, W. A., Stromer, M. H., Goll, D. E., and Suzuki, A. (1972), J. Cell Biol. 52, 367) was purified from porcine skeletal muscle extracts by using five column chromatographic procedures in succession: (1) 6% agarose...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00655a019
更新日期:1976-05-18 00:00:00
abstract::Six active site mutants of Escherichia coli phosphofructokinase have been constructed and characterized using steady-state kinetics. All but one of the mutants (ES222) have significantly lower maximal activity, implicating these residues in the catalytic process. Replacement of Asp127, the key catalytic residue in the...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00153a017
更新日期:1992-09-29 00:00:00
abstract::Internal fatty acylation of proteins is a recognized means of modifying biological behavior. Escherichia coli hemolysin A (HlyA), a toxic protein, is transcribed as a nontoxic protein and made toxic by internal acylation of two lysine residue epsilon-amino groups; HlyC catalyzes the acyl transfer from acyl-acyl carrie...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi990138y
更新日期:1999-07-06 00:00:00
abstract::Kinetic and structural data are presented on the interaction with Torpedo californica acetylcholinesterase (TcAChE) of (+)-huperzine A, a synthetic enantiomer of the anti-Alzheimer drug, (-)-huperzine A, and of its natural homologue (-)-huperzine B. (+)-Huperzine A and (-)-huperzine B bind to the enzyme with dissociat...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi020151+
更新日期:2002-09-03 00:00:00
abstract::Purification and potential tachykinin and enkephalin precursor cleaving enzymes from bovine chromaffin granules was undertaken using as substrates the model precursors 35S-(Met)-beta-preprotachykinin [35S-(Met)-beta-PPT] and 35S-(Met)-preproenkephalin [35S-(Met)-PPE]. Purification by concanavalin A-Sepharose, Sephacry...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00132a011
更新日期:1992-05-05 00:00:00
abstract::Two-dimensional nuclear magnetic resonance techniques were used to assign the NH, C alpha H, and C beta H protons of over 60 of the 104 amino acid residues in the 1H NMR spectrum of horse ferrocytochrome c. The majority of these amino acids were completely assigned. Assignments were based on the analysis of two-dimens...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00341a002
更新日期:1985-09-24 00:00:00
abstract::The nitrile stretching vibration is increasingly used as a sensitive infrared probe of local protein environments. However, site-specific incorporation of a nitrile moiety into proteins is difficult. Here we show that various aromatic nitriles can be easily incorporated into peptides and proteins via either thiol alky...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi101711a
更新日期:2010-12-14 00:00:00