A novel method of HPV genotyping using Hybrid Capture sample preparation method combined with GP5+/6+ PCR and multiplex detection on Luminex XMAP.

Abstract:

:A novel DNA detection assay comprising Hybrid Capture sample preparation, GP5+/6+ PCR with modifications and Luminex 100 detection was developed and applied to genotyping of human papillomavirus (HPV) in cervical samples. Target-specific sample preparation was performed using magnetic beads conjugated with Hybrid Capture (HC) antibody. DNA-RNA hybrids were formed between DNA target and RNA probes and captured on HC-beads. DNA on magnetic beads was amplified without elution using consensus GP5+/6+ PCR and then genotyped on Luminex beads using hybridization probes for the 17 high-risk HPV types 16, 18, 26, 31, 33, 35, 39, 45, 51, 52, 56, 58, 59, 66, 68, 73, 82 and an internal control. This new sequence-specific Hybrid Capture sample preparation is fast, efficient and allows direct HPV genotyping by PCR. Compared to traditional non-sequence-specific sample preparation methods, HC sample preparation demonstrated slightly better detection of multiple HPV infections. The clinical utility of this method was demonstrated on cervical samples positive for HR HPV by the Hybrid Capture 2 (hc2) screening assay.

journal_name

J Virol Methods

authors

Nazarenko I,Kobayashi L,Giles J,Fishman C,Chen G,Lorincz A

doi

10.1016/j.jviromet.2008.09.002

subject

Has Abstract

pub_date

2008-12-01 00:00:00

pages

76-81

issue

1-2

eissn

0166-0934

issn

1879-0984

pii

S0166-0934(08)00323-6

journal_volume

154

pub_type

杂志文章
  • High yield expression and purification of Chikungunya virus E2 recombinant protein and its evaluation for serodiagnosis.

    abstract::Disease caused by Chikungunya virus (CHIKV) is clinically characterized by sudden-onset of fever and severe arthralgia, which may persist for weeks, months, or years after acute phase of the infection. CHIKV is spreading globally; in India it first appeared in the 1960s followed by a quiescent period and then a full-b...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/j.jviromet.2016.05.003

    authors: Verma A,Chandele A,Nayak K,Kaja MK,Arulandu A,Lodha R,Ray P

    更新日期:2016-09-01 00:00:00

  • Methods for successful inactivation of Rift Valley fever virus in infected mosquitoes.

    abstract::Ensuring the successful inactivation of select agent material is critical for maintaining compliance with federal regulations and safeguarding laboratory personnel from exposure to dangerous pathogens. Rift Valley fever virus (RVFV), naturally transmitted by mosquitoes, is classified as a select agent by the CDC and U...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/j.jviromet.2019.113794

    authors: Bergren NA,Patterson EI,Blair H,Ellis RP,Kading RC

    更新日期:2020-02-01 00:00:00

  • Structural and biological properties of Cucumber mosaic virus particles carrying hepatitis C virus-derived epitopes.

    abstract::The Cucumber mosaic virus (CMV) is a three-component isodiametric plant virus with an extremely wide host range, present worldwide. A pseudorecombinant form has been described, deriving from the RNA3 component of the CMV-S strain, carrying the coat protein (CP) gene, and the RNA 1, 2 components of the CMV-D strain. Th...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/j.jviromet.2008.10.005

    authors: Nuzzaci M,Bochicchio I,De Stradis A,Vitti A,Natilla A,Piazzolla P,Tamburro AM

    更新日期:2009-02-01 00:00:00

  • A novel virus-encoded nucleocytoplasmic shuttling protein: the UL3 protein of herpes simplex virus type 1.

    abstract::Herpes simplex virus type 1 (HSV-1) UL3 protein is a nuclear protein. In this study, the molecular mechanism of the subcellular localization of UL3 was characterized by fluorescence microscopy in living cells. A nuclear localization signal (NLS) and a nuclear export signal (NES) were also identified. UL3 was demonstra...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/j.jviromet.2011.08.004

    authors: Zheng C,Lin F,Wang S,Xing J

    更新日期:2011-11-01 00:00:00

  • Brief validation of the novel GeneXpert Xpress SARS-CoV-2 PCR assay.

    abstract::The clinical and epidemiologic management of the SARS-CoV-2 pandemic is critically dependent on molecular assays with short turn-around time. We validated the novel Xpert Xpress SARS-CoV-2 assay using a commercial nucleic acid testing (Roche Cobas 6800). We found an excellent concordance over a range of SARS-CoV-2 loa...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/j.jviromet.2020.113925

    authors: Goldenberger D,Leuzinger K,Sogaard KK,Gosert R,Roloff T,Naegele K,Cuénod A,Mari A,Seth-Smith H,Rentsch K,Hinić V,Hirsch HH,Egli A

    更新日期:2020-10-01 00:00:00

  • Receptor-mediated transport of oligodeoxynucleotides into hepatic cells.

    abstract::Receptor-mediated endocytosis was employed for a highly efficient transport of oligodeoxynucleotides into hepatoma cell line PLC/PRF/5. The oligodeoxynucleotides were bound to the asialofetuin-poly-L-lysine conjugate and this complex was internalized by the cells via asialoglycoprotein receptor, an endocytic receptor ...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/0166-0934(93)90181-p

    authors: Reinis M,Damková M,Korec E

    更新日期:1993-04-01 00:00:00

  • Presence of enteroviruses in recreational water in Wuhan, China.

    abstract::Contaminated recreational waters pose a public health concern, as the potential for waterborne diseases exists in water contaminated with human fecal waste. Worldwide, bacterial indicators such as Escherichia coli, enterococci, and total and fecal coliform are used as indicators of water quality. However, enteric viru...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/j.jviromet.2013.06.028

    authors: Allmann E,Pan L,Li L,Li D,Wang S,Lu Y

    更新日期:2013-11-01 00:00:00

  • Application of linker-ligation-PCR for construction of phage display epitope libraries.

    abstract::An efficient method for construction of random epitope libraries using filamentous phage is described. Random DNA fragments generated by DNase I digestion were blunt ended by T4 DNA polymerase and ligated with a 12-mer linker, followed by PCR amplification using the same oligonucleotide linker as primers. The results ...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/0166-0934(96)02057-5

    authors: Nagesha HS,Yu M,Wang LF

    更新日期:1996-07-01 00:00:00

  • Susceptibility of bovine mesenchymal stem cells to bovine herpesvirus 4.

    abstract::Bovine herpesvirus 4 (BoHV-4) is a gamma herpesvirus with no clear disease association. Previous studies have demonstrated that macrophages can harbour persistent BoHV-4. Since mesenchymal stem cells in bone marrow regulate the differentiation and proliferation of adjacent haematopoietic precursors, such as macrophage...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/j.jviromet.2005.02.019

    authors: Donofrio G,Colleoni S,Galli C,Lazzari G,Cavirani S,Flammini CF

    更新日期:2005-08-01 00:00:00

  • Generation and molecular docking analysis of specific single-chain variable fragments selected by phage display against the recombinant nucleocapsid protein of fig mosaic virus.

    abstract::The mosaic disease caused by fig mosaic virus (FMV) is considered the plague of fig worldwide. A naïve phage display library, raised against the recombinant nucleocapsid protein of FMV (FMV-Np) was screened to obtain specific monoclonal recombinant antibodies in the form of single chain variable fragments (scFvs). Aft...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/j.jviromet.2019.113796

    authors: Shahmirzaie M,Safarnejad MR,Rakhshandehroo F,Safarpour H,Shirazi FH,Zamanizadeh HR,Elbeaino T

    更新日期:2020-02-01 00:00:00

  • Colonisation of mice and pigs by a chimeric porcine circovirus 1-2 prototype vaccine strain and a PCV2 isolate originating in China and their induction of cytokines.

    abstract::A chimeric porcine circovirus (PCV) 1-2b vaccine strain and its parental wild-type PCV2b strain from China (PCV2-J) were used separately to vaccinate BALB/c mice and tissue and serum samples were collected from the mice to investigate whether the replication properties of the viruses differed. The spleen lymphocytes f...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/j.jviromet.2020.113905

    authors: Cui X,Wang X,Gao Q,Liu X,Kai Y,Chen C,Gao S

    更新日期:2020-09-01 00:00:00

  • Preparation and evaluation of a recombinant Rift Valley fever virus N protein for the detection of IgG and IgM antibodies in humans and animals by indirect ELISA.

    abstract::This paper describes the cloning, sequencing and bacterial expression of the N protein of the Rift Valley fever virus (RVFV) ZIM688/78 isolate and its evaluation in indirect ELISAs (I-ELISA) for the detection of IgM and IgG antibodies in human and sheep sera. Sera used for the evaluation were from 106 laboratory worke...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/j.jviromet.2006.11.005

    authors: Jansen van Vuren P,Potgieter AC,Paweska JT,van Dijk AA

    更新日期:2007-03-01 00:00:00

  • The impact of highly active antiretroviral therapy by the oral route on the CD8 subset in monkeys infected chronically with SHIV 89.6P.

    abstract::The objective of this study was to assess the impact of highly active antiretroviral therapy (HAART) by an oral route on the peripheral blood CD8 subset in the monkeys infected persistently with a pathogenic strain, SHIV(89.6P). Two rhesus macaques were inoculated intravenously with SHIV(89.6P), then treated with the ...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/s0166-0934(03)00201-5

    authors: Yoshimura K,Ido E,Akiyama H,Kimura T,Aoki M,Suzuki H,Mitsuya H,Hayami M,Matsushita S

    更新日期:2003-09-01 00:00:00

  • Demonstration of calicivirus in human faeces by immunosorbent and immunogold-labelling electron microscopy methods.

    abstract::Immunosorbent electron microscopy (ISEM) and immuno-gold staining (IGS) electron microscopy methods have been applied to human faeces, shown by direct electron microscopy (EM) to contain calicivirus. Caliciviruses were successfully trapped on grids coated with positive rabbit or human antisera against calicivirus, but...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/0166-0934(86)90034-0

    authors: Kjeldsberg E

    更新日期:1986-11-01 00:00:00

  • Suitability of autoclaved tap water for preparation of ELISA reagents and washing buffer.

    abstract::The suitability of autoclaved tap water for the preparation of ELISA reagents and washing buffer was compared with that of ultrapure water, in a standard indirect ELISA for the detection of antibodies to pseudorabies virus (PRV). The performance of the assay, using autoclaved tap water (AT-ELISA) compared favourably t...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/0166-0934(94)90110-4

    authors: Afshar A,Zhao X,Heckert RA,Trotter HC

    更新日期:1994-02-01 00:00:00

  • Quantitative characterization of cell transduction by HSV-1 amplicons using flow cytometry and real-time PCR.

    abstract::Herpes simplex virus type 1 (HSV-1) amplicon preparations are usually quantified as transducing units/ml (TU/ml), with little information on genomic copy/TU ratios. In the present study, two HSV-1 amplicons expressing enhanced green fluorescent protein (EGFP) were analysed by quantitative PCR (qPCR) and transducing ac...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/j.jviromet.2009.03.018

    authors: El-Sherbini YM,Stevenson MM,Seymour LW,Wade-Martins R

    更新日期:2009-08-01 00:00:00

  • Detection of virus-associated dsRNA from leafroll infected grapevines.

    abstract::A simple procedure is described for reproducible detection of double stranded (ds) RNAs in leafroll infected grapevines. The procedure involves the extraction of tissues by a medium which preferentially yields dsRNA. The RNA is purified by CF11 cellulose chromatography and gel electrophoresis. The dsRNAs varied in siz...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/0166-0934(91)90170-5

    authors: Rezaian MA,Krake LR,Cunying Q,Hazzalin CA

    更新日期:1991-02-01 00:00:00

  • A rapid and sensitive assay for detection of replication-competent adenoviruses by a combination of microcarrier cell culture and quantitative PCR.

    abstract::The development of a rapid and sensitive assay for detection of replication-competent adenoviruses (RCAs) is described. This RCA assay consists of an incubation step of 4 days of adenoviral vectors on A549 cells in a microcarrier cell culture system followed by detection of amplified RCAs by E1-specific quantitative P...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/j.jviromet.2007.05.010

    authors: Schalk JA,de Vries CG,Orzechowski TJ,Rots MG

    更新日期:2007-11-01 00:00:00

  • Identification and characterization of Highlands J virus from a Mississippi sandhill crane using unbiased next-generation sequencing.

    abstract::Advances in massively parallel DNA sequencing platforms, commonly termed next-generation sequencing (NGS) technologies, have greatly reduced time, labor, and cost associated with DNA sequencing. Thus, NGS has become a routine tool for new viral pathogen discovery and will likely become the standard for routine laborat...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/j.jviromet.2014.05.018

    authors: Ip HS,Wiley MR,Long R,Palacios G,Shearn-Bochsler V,Whitehouse CA

    更新日期:2014-09-01 00:00:00

  • Viral elution and concentration method for detection of influenza A viruses in mud by real-time RT-PCR.

    abstract::The role of environmental reservoirs in avian influenza virus (AIV) transmission has been investigated during AIV-associated outbreaks. To date, no method has been defined for detection of AIV from mud samples. A procedure using elution and polyethylene glycol (PEG) concentration steps was designed to detect AIV by RT...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/j.jviromet.2011.10.013

    authors: Deboosere N,Horm SV,Delobel A,Gachet J,Buchy P,Vialette M

    更新日期:2012-01-01 00:00:00

  • Comparison of detection and quantification of HBV DNA in chronic HBeAg negative and positive patients by Abbott RealTime HBV and Roche Cobas TaqMan HBV assays.

    abstract::Monitoring the serum hepatitis B viral DNA levels with sensitive realtime PCR assays is strongly recommended for the management of patients with chronic HBV infection. This study compares the performance of two realtime HBV quantitative PCR assays with samples from chronic HBeAg(+) and HBeAg(-) patients. ...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/j.jviromet.2013.06.036

    authors: Morris CJ,Hill M,de Medina M,Herman C,Cloherty GA,Martin P

    更新日期:2013-11-01 00:00:00

  • A one-step centrifugal ultrafiltration method to concentrate enteric viruses from wastewater.

    abstract::A one-step centrifugal ultrafiltration method was developed to enhance rapid detection of human enteric viruses and co-occurring viruses in wastewater. Samples were collected pre- and post-UV treatment at two full-scale tertiary municipal wastewater treatment plants in Calgary, Canada. Viruses were concentrated from 1...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/j.jviromet.2016.09.010

    authors: Qiu Y,Lee BE,Ruecker NJ,Neumann N,Ashbolt N,Pang X

    更新日期:2016-11-01 00:00:00

  • A sensitive in-house RT-PCR genotyping system for combined detection of plasma HIV-1 and assessment of drug resistance.

    abstract::Quantification of the viral burden and identification of drug resistant mutations are important laboratory tools in the management of HIV-1 infected patients. However, widespread use of assays for viral load determination and genotyping is still hampered by the high cost. Here, an in-house RT-PCR-sequencing assay for ...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/j.jviromet.2005.11.004

    authors: Steegen K,Demecheleer E,De Cabooter N,Nges D,Temmerman M,Ndumbe P,Mandaliya K,Plum J,Verhofstede C

    更新日期:2006-05-01 00:00:00

  • A novel and inexpensive application of RNAi technology to protect shrimp from viral disease.

    abstract::Large-scale production of long dsRNA is needed if antiviral applications of RNAi are to succeed in shrimp farm operations. A novel hairpin-RNA expression vector was developed based on the RNA-dependent RNA polymerase (RdRp) gene of yellow head virus (YHV), the cause of a lethal shrimp disease. Using transformed RNase-...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/j.jviromet.2009.08.010

    authors: Saksmerprome V,Charoonnart P,Gangnonngiw W,Withyachumnarnkul B

    更新日期:2009-12-01 00:00:00

  • Development and characterization of mouse monoclonal antibodies against monomeric dengue virus non-structural glycoprotein 1 (NS1).

    abstract::Dengue virus (DENV) nonstructural-1 (NS1) glycoprotein is useful for diagnosis of DENV infections in the first 8 days of illness with any of the four serotypes (DENV-1, DENV-2, DENV-3 and DENV-4). However, NS1 diagnostics are less sensitive for secondary DENV infections so the utility of NS1 diagnostics in dengue ende...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/j.jviromet.2015.06.003

    authors: Gelanew T,Poole-Smith BK,Hunsperger E

    更新日期:2015-09-15 00:00:00

  • A latex agglutination assay to quantify the amount of hemagglutinin protein in adjuvanted low-dose influenza monovalent vaccines.

    abstract::To formulate inactivated influenza vaccines, the concentration of hemagglutinin (HA) must be accurately determined. The standard test currently used to measure HA in influenza vaccines is the Single Radial Immunodiffusion (SRID) assay. We developed a very rapid, simple and sensitive alternative quantitative HA assay, ...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/j.jviromet.2017.10.011

    authors: Buffin S,Ikhelef N,Prudent J,Dubayle J,Nougarede N,Varenne MP,Moste C,Legastelois I

    更新日期:2018-01-01 00:00:00

  • Rapid detection of human parvovirus B19 DNA by dot-hybridization and the polymerase chain reaction.

    abstract::The results of a comparison of three DNA-detection methods for human parvovirus B19 DNA are described. The sensitivity of detection of virus from hybridization assays using 32P-radiolabeled DNA and RNA probes was compared with a method for enzymatically amplifying specific target DNA sequences (polymerase chain reacti...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/0166-0934(89)90085-2

    authors: Salimans MM,Holsappel S,van de Rijke FM,Jiwa NM,Raap AK,Weiland HT

    更新日期:1989-01-01 00:00:00

  • Construction of replication competent plasmids of hepatitis B virus subgenotypes A1, A2 and D3 with authentic endogenous promoters.

    abstract::Hepatitis B virus (HBV) is hyperendemic to southern Africa, with genotype A of HBV being the predominant genotype, and subgenotype A1 prevailing. Infection with this subgenotype is associated with rapid disease progression, and high frequency of hepatocellular carcinoma development. The objectives of our study was to ...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/j.jviromet.2014.03.015

    authors: Bhoola NH,Reumann K,Kew MC,Will H,Kramvis A

    更新日期:2014-07-01 00:00:00

  • A baculovirus vector derived from immediately early gene promoter of Autographa californica nuclear polyhedrosis virus.

    abstract::A transfer vector was constructed in which the neomycin resistance (neo) gene was under the control of a copy of Autographa californica nuclear polyhedrosis virus (AcMNPV) IE1 gene promoter at the p10 locus. After cotransfection of Spodoptera frugiperda (Sf9) cells with the transfer vector and infectious AcMNPV DNA, t...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/0166-0934(96)02112-x

    authors: Zhu FX,Qi YP,Huang YX,Bing Q

    更新日期:1996-10-01 00:00:00

  • Quantitative and sensitive detection of immune-complexed and free HIV antigen after boiling of serum.

    abstract::5-min boiling of 3-fold diluted serum leads to the quantitative release of immune-complexed HIV antigen (Ag) that can be readily measured. The method is capable of detecting as little as 4 to 5 pg/ml Ag p24 depending on the Ag test used. Of a panel of 50 anti-HIV-positive sera, 30 (60%) were Ag-positive after heat den...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/0166-0934(93)90080-b

    authors: Schüpbach J,Böni J

    更新日期:1993-07-01 00:00:00