Using human and model performance to compare MRI reconstructions.

Abstract:

:Magnetic resonance imaging (MRI) reconstruction techniques are often validated with signal-to-noise ratio (SNR), contrast-to-noise ratio, and mean-to-standard-deviation ratio measured on example images. We present human and model observers as a novel approach to evaluating reconstructions for low-SNR magnetic resonance (MR) images. We measured human and channelized Hotelling observers in a two-alternative forced-choice signal-known-exactly detection task on synthetic MR images. We compared three reconstructions: magnitude, wavelet-based denoising, and phase-corrected real. Human observers performed approximately equally using all three reconstructions. The model observer showed very close agreement with the humans over the range of images. These results contradict previous predictions in the literature based on SNR. Thus, we propose that human observer studies are important for validating MRI reconstructions. The model's performance indicates that it may provide an alternative to human studies.

journal_name

IEEE Trans Med Imaging

authors

Tisdall MD,Atkins MS

doi

10.1109/TMI.2006.881374

subject

Has Abstract

pub_date

2006-11-01 00:00:00

pages

1510-7

issue

11

eissn

0278-0062

issn

1558-254X

journal_volume

25

pub_type

杂志文章
  • Graph-based multi-surface segmentation of OCT data using trained hard and soft constraints.

    abstract::Optical coherence tomography (OCT) is a well-established image modality in ophthalmology and used daily in the clinic. Automatic evaluation of such datasets requires an accurate segmentation of the retinal cell layers. However, due to the naturally low signal to noise ratio and the resulting bad image quality, this ta...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2012.2225152

    authors: Dufour PA,Ceklic L,Abdillahi H,Schröder S,De Dzanet S,Wolf-Schnurrbusch U,Kowal J

    更新日期:2013-03-01 00:00:00

  • Difference-Frequency Ultrasound Imaging With Non-Linear Contrast.

    abstract::Conventional ultrasound imaging is based on the scattering of sound from inhomogeneities in the density and the speed of sound and is often used in medicine to resolve pathologic compared to normal tissue. Here we demonstrate a difference-frequency ultrasound (dfUS) imaging method that is based on the interaction of t...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2019.2957280

    authors: Li Y,Polyak D,Johnson E,Yecies D,Shevidi S,de la Zerda A,Gephart MH,Chu S

    更新日期:2020-05-01 00:00:00

  • Separation of Metabolites and Macromolecules for Short-TE 1H-MRSI Using Learned Component-Specific Representations.

    abstract::Short-echo-time (TE) proton magnetic resonance spectroscopic imaging (MRSI) allows for simultaneously mapping a number of molecules in the brain, and has been recognized as an important tool for studying in vivo biochemistry in various neuroscience and disease applications. However, separation of the metabolite and ma...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2020.3048933

    authors: Li Y,Wang Z,Sun R,Lam F

    更新日期:2021-01-04 00:00:00

  • Simulation and Synthesis in Medical Imaging.

    abstract::This editorial introduces the Special Issue on Simulation and Synthesis in Medical Imaging. In this editorial, we define so-far ambiguous terms of simulation and synthesis in medical imaging. We also briefly discuss the synergistic importance of mechanistic (hypothesis-driven) and phenomenological (data-driven) models...

    journal_title:IEEE transactions on medical imaging

    pub_type: 社论

    doi:10.1109/TMI.2018.2800298

    authors: Frangi AF,Tsaftaris SA,Prince JL

    更新日期:2018-03-01 00:00:00

  • Fast local trust region technique for diffusion tensor registration using exact reorientation and regularization.

    abstract::Diffusion tensor imaging is widely used in brain connectivity research. As more and more studies recruit large numbers of subjects, it is important to design registration methods which are not only theoretically rigorous, but also computationally efficient. However, the requirement of reorienting diffusion tensors com...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2013.2274051

    authors: Li J,Shi Y,Tran G,Dinov I,Wang DJ,Toga A

    更新日期:2014-05-01 00:00:00

  • PET Image Reconstruction Using Deep Image Prior.

    abstract::Recently, deep neural networks have been widely and successfully applied in computer vision tasks and have attracted growing interest in medical imaging. One barrier for the application of deep neural networks to medical imaging is the need for large amounts of prior training pairs, which is not always feasible in cli...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2018.2888491

    authors: Gong K,Catana C,Qi J,Li Q

    更新日期:2019-07-01 00:00:00

  • Automatic construction of 3D-ASM intensity models by simulating image acquisition: application to myocardial gated SPECT studies.

    abstract::Active shape models bear a great promise for model-based medical image analysis. Their practical use, though, is undermined due to the need to train such models on large image databases. Automatic building of point distribution models (PDMs) has been successfully addressed and a number of autolandmarking techniques ar...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2008.2004819

    authors: Tobon-Gomez C,Butakoff C,Aguade S,Sukno F,Moragas G,Frangi AF

    更新日期:2008-11-01 00:00:00

  • In Vivo Measurement of Brain Tissue Response After Irradiation: Comparison of T2 Relaxation, Apparent Diffusion Coefficient, and Electrical Conductivity.

    abstract::Radiation therapy (RT) has been widely used as a powerful treatment tool to address cancerous tissues because of its ability to control cell growth. Its ionizing radiation damages the DNA of cancerous tissues, leading to cell death. Medical imaging, however, still has limitations regarding the reliability of its asses...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2019.2913766

    authors: Park JA,Kang KJ,Ko IO,Lee KC,Choi BK,Katoch N,Kim JW,Kim HJ,Kwon OI,Woo EJ

    更新日期:2019-12-01 00:00:00

  • A novel estimation method for physiological parameters in dynamic contrast-enhanced MRI: application of a distributed parameter model using Fourier-domain calculations.

    abstract::Dynamic contrast-enhanced magnetic resonance imaging (MRI) is a promising tool in the evaluation of tumor physiology. From rapidly acquired images and a model for contrast agent pharmacokinetics, physiological parameters are derived. One pharmacokinetic model, the tissue homogeneity model, enables estimation of both b...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2009.2016212

    authors: Garpebring A,Ostlund N,Karlsson M

    更新日期:2009-09-01 00:00:00

  • Using a visual discrimination model for the detection of compression artifacts in virtual pathology images.

    abstract::A major issue in telepathology is the extremely large and growing size of digitized "virtual" slides, which can require several gigabytes of storage and cause significant delays in data transmission for remote image interpretation and interactive visualization by pathologists. Compression can reduce this massive amoun...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2010.2077308

    authors: Johnson JP,Krupinski EA,Yan M,Roehrig H,Graham AR,Weinstein RS

    更新日期:2011-02-01 00:00:00

  • Simulation of the expected performance of a seamless scanner for brain PET based on highly pixelated CdTe detectors.

    abstract::The aim of this work is the evaluation of the design for a nonconventional PET scanner, the voxel imaging PET (VIP), based on pixelated room-temperature CdTe detectors yielding a true 3-D impact point with a density of 450 channels/cm(3), for a total 6 336 000 channels in a seamless ring shaped volume. The system is s...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2013.2284657

    authors: Mikhaylova E,De Lorenzo G,Chmeissani M,Kolstein M,Cañadas M,Arce P,Calderón Y,Uzun D,Ariño G,Macias-Montero JG,Martinez R,Puigdengoles C,Cabruja E

    更新日期:2014-02-01 00:00:00

  • Improved Low-Count Quantitative PET Reconstruction With an Iterative Neural Network.

    abstract::Image reconstruction in low-count PET is particularly challenging because gammas from natural radioactivity in Lu-based crystals cause high random fractions that lower the measurement signal-to-noise-ratio (SNR). In model-based image reconstruction (MBIR), using more iterations of an unregularized method may increase ...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2020.2998480

    authors: Lim H,Chun IY,Dewaraja YK,Fessler JA

    更新日期:2020-11-01 00:00:00

  • Border detection on digitized skin tumor images.

    abstract::A radial search technique is presented for detecting skin tumor borders in clinical dermatology images. First, it includes two rounds of radial search based on the same tumor center. The first-round search is independent, and the second-round search is knowledge-based tracking. Then a rescan with a new center is used ...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/42.896789

    authors: Zhang Z,Stoecker WV,Moss RH

    更新日期:2000-11-01 00:00:00

  • Tomographic fluorescence imaging in tissue phantoms: a novel reconstruction algorithm and imaging geometry.

    abstract::A novel image reconstruction algorithm has been developed and demonstrated for fluorescence-enhanced frequency-domain photon migration (FDPM) tomography from measurements of area illumination with modulated excitation light and area collection of emitted fluorescence light using a gain modulated image-intensified char...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/tmi.2004.839359

    authors: Roy R,Thompson AB,Godavarty A,Sevick-Muraca EM

    更新日期:2005-02-01 00:00:00

  • Anti-aliasing weighting functions for single-slice helical CT.

    abstract::Spatially variant longitudinal aliasing plagues most volumes reconstructed from single-slice helical computed tomography data, and its presence can degrade resolution and distort image structures. We have recently developed a Fourier-based approach to longitudinal interpolation in helical computed tomography that can,...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2002.803104

    authors: La Rivière PJ,Pan X

    更新日期:2002-08-01 00:00:00

  • Stopping Rule for the MLE Algorithm Based on Statistical Hypothesis Testing.

    abstract::It is known that when the maximum likelihood estimator (MLE) algorithm passes a certain point, it produces images that begin to deteriorate. We propose a quantitative criterion with a simple probabilistic interpretation that allows the user to stop the algorithm just before this effect begins. The MLE algorithm search...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.1987.4307849

    authors: Veklerov E,Llacer J

    更新日期:1987-01-01 00:00:00

  • Twenty new digital brain phantoms for creation of validation image data bases.

    abstract::Simulations provide a way of generating data where ground truth is known, enabling quantitative testing of image processing methods. In this paper, we present the construction of 20 realistic digital brain phantoms that can be used to simulate medical imaging data. The phantoms are made from 20 normal adults to take i...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2006.883453

    authors: Aubert-Broche B,Griffin M,Pike GB,Evans AC,Collins DL

    更新日期:2006-11-01 00:00:00

  • Joint Bayesian-Incorporating Estimation of Multiple Gaussian Graphical Models to Study Brain Connectivity Development in Adolescence.

    abstract::Adolescence is a transitional period between the childhood and adulthood with physical changes, as well as increasing emotional development. Studies have shown that the emotional sensitivity is related to a second period of rapid brain growth. However, there is little focus on the trend of brain development during thi...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2019.2926667

    authors: Zhang A,Cai B,Hu W,Jia B,Liang F,Wilson TW,Stephen JM,Calhoun VD,Wang YP

    更新日期:2020-02-01 00:00:00

  • Four-dimensional spectral-spatial imaging using projection reconstruction.

    abstract::An n-dimensional (n-D) filtered backprojection image reconstruction algorithm has been developed and used in the reconstruction of 4-D spectral-spatial magnetic resonance imaging (MRI) data. The algorithm uses n-1 successive stages of 2-D filtered backprojection to reconstruct an n-D image. This approach results in a ...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/42.387718

    authors: Hyslop WB,Woods RK,Lauterbur PC

    更新日期:1995-01-01 00:00:00

  • Globally convergent image reconstruction for emission tomography using relaxed ordered subsets algorithms.

    abstract::We present two types of globally convergent relaxed ordered subsets (OS) algorithms for penalized-likelihood image reconstruction in emission tomography: modified block sequential regularized expectation-maximization (BSREM) and relaxed OS separable paraboloidal surrogates (OS-SPS). The global convergence proof of the...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2003.812251

    authors: Ahn S,Fessler JA

    更新日期:2003-05-01 00:00:00

  • Ultrafast Ultrasound Imaging With Cascaded Dual-Polarity Waves.

    abstract::Ultrafast ultrasound imaging using plane or diverging waves, instead of focused beams, has advanced greatly the development of novel ultrasound imaging methods for evaluating tissue functions beyond anatomical information. However, the sonographic signal-to-noise ratio (SNR) of ultrafast imaging remains limited due to...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2017.2781261

    authors: Zhang Y,Guo Y,Lee WN

    更新日期:2018-04-01 00:00:00

  • Estimating the Accuracy Level Among Individual Detections in Clustered Microcalcifications.

    abstract::Computerized detection of clustered microcalcifications (MCs) in mammograms often suffers from the occurrence of false positives (FPs), which can vary greatly from case to case. We investigate how to apply statistical estimation to determine the number of FPs that are present in a detected MC lesion. First, we describ...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2017.2654799

    authors: Sainz de Cea MV,Nishikawa RM,Yang Y

    更新日期:2017-05-01 00:00:00

  • Revealing the Microscopic Structure of Human Renal Cell Carcinoma in Three Dimensions.

    abstract::For fully characterizing renal cell carcinoma (RCC), information about the 3D tissue microstructure is essential. Histopathology, which represents the current diagnostic gold standard, is destructive and only provides 2D information. 3D X-ray histology endeavors to overcome these limitations by generating 3D data. In ...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2019.2952028

    authors: Ferstl S,Busse M,Muller M,Kimm MA,Drecoll E,Burkner T,Allner S,Dierolf M,Pfeiffer D,Rummeny EJ,Weichert W,Pfeiffer F

    更新日期:2020-05-01 00:00:00

  • The fuzzy Hough transform-feature extraction in medical images.

    abstract::Identification of anatomical features is a necessary step for medical image analysis. Automatic methods for feature identification using conventional pattern recognition techniques typically classify an object as a member of a predefined class of objects, but do not attempt to recover the exact or approximate shape of...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/42.293916

    authors: Philip KP,Dove EL,McPherson DD,Gotteiner NL,Stanford W,Chandran KB

    更新日期:1994-01-01 00:00:00

  • Augmented Likelihood Image Reconstruction.

    abstract::The presence of high-density objects remains an open problem in medical CT imaging. Data of projections passing through objects of high density, such as metal implants, are dominated by noise and are highly affected by beam hardening and scatter. Reconstructed images become less diagnostically conclusive because of pr...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2015.2459764

    authors: Stille M,Kleine M,Hägele J,Barkhausen J,Buzug TM

    更新日期:2016-01-01 00:00:00

  • Unsupervised Deep Learning Applied to Breast Density Segmentation and Mammographic Risk Scoring.

    abstract::Mammographic risk scoring has commonly been automated by extracting a set of handcrafted features from mammograms, and relating the responses directly or indirectly to breast cancer risk. We present a method that learns a feature hierarchy from unlabeled data. When the learned features are used as the input to a simpl...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2016.2532122

    authors: Kallenberg M,Petersen K,Nielsen M,Ng AY,Pengfei Diao,Igel C,Vachon CM,Holland K,Winkel RR,Karssemeijer N,Lillholm M

    更新日期:2016-05-01 00:00:00

  • Monitoring Acute Stroke Progression: Multi-Parametric OCT Imaging of Cortical Perfusion, Flow, and Tissue Scattering in a Mouse Model of Permanent Focal Ischemia.

    abstract::Cerebral ischemic stroke causes injury to brain tissue characterized by a complex cascade of neuronal and vascular events. Imaging during the early stages of its development allows prediction of tissue infarction and penumbra so that optimal intervention can be determined in order to salvage brain function impairment....

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2019.2895779

    authors: Choi WJ,Li Y,Wang RK

    更新日期:2019-06-01 00:00:00

  • Co-registration of white matter tractographies by adaptive-mean-shift and Gaussian mixture modeling.

    abstract::In this paper, we present a robust approach to the registration of white matter tractographies extracted from diffusion tensor-magnetic resonance imaging scans. The fibers are projected into a high dimensional feature space based on the sequence of their 3-D coordinates. Adaptive mean-shift clustering is applied to ex...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2009.2029097

    authors: Zvitia O,Mayer A,Shadmi R,Miron S,Greenspan HK

    更新日期:2010-01-01 00:00:00

  • Choice of initial conditions in the ML reconstruction of fan-beam transmission with truncated projection data.

    abstract::We investigate the effects of initial conditions in the iterative maximum-likelihood (ML) reconstruction of fan-beam transmission projection data with truncation. In an iterative ML reconstruction, the estimate of the transmission reconstructed image in the previous iteration is multiplied by some factors to obtain th...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/42.611352

    authors: Pan TS,Tsui BM,Byrne CL

    更新日期:1997-08-01 00:00:00

  • Frequency-domain optical tomographic imaging of arthritic finger joints.

    abstract::We are presenting data from the largest clinical trial on optical tomographic imaging of finger joints to date. Overall we evaluated 99 fingers of patients affected by rheumatoid arthritis (RA) and 120 fingers from healthy volunteers. Using frequency-domain imaging techniques we show that sensitivities and specificiti...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2011.2135374

    authors: Hielscher AH,Kim HK,Montejo LD,Blaschke S,Netz UJ,Zwaka PA,Illing G,Muller GA,Beuthan J

    更新日期:2011-10-01 00:00:00