Abstract:
:Mammographic risk scoring has commonly been automated by extracting a set of handcrafted features from mammograms, and relating the responses directly or indirectly to breast cancer risk. We present a method that learns a feature hierarchy from unlabeled data. When the learned features are used as the input to a simple classifier, two different tasks can be addressed: i) breast density segmentation, and ii) scoring of mammographic texture. The proposed model learns features at multiple scales. To control the models capacity a novel sparsity regularizer is introduced that incorporates both lifetime and population sparsity. We evaluated our method on three different clinical datasets. Our state-of-the-art results show that the learned breast density scores have a very strong positive relationship with manual ones, and that the learned texture scores are predictive of breast cancer. The model is easy to apply and generalizes to many other segmentation and scoring problems.
journal_name
IEEE Trans Med Imagingjournal_title
IEEE transactions on medical imagingauthors
Kallenberg M,Petersen K,Nielsen M,Ng AY,Pengfei Diao,Igel C,Vachon CM,Holland K,Winkel RR,Karssemeijer N,Lillholm Mdoi
10.1109/TMI.2016.2532122subject
Has Abstractpub_date
2016-05-01 00:00:00pages
1322-1331issue
5eissn
0278-0062issn
1558-254Xjournal_volume
35pub_type
杂志文章abstract::Foreshortening of vessel segments in angiographic (biplane) projection images may cause misinterpretation of the extent and degree of coronary artery disease. The views in which the object of interest are visualized with minimum foreshortening are called optimal views. The authors present a complete approach to obtain...
journal_title:IEEE transactions on medical imaging
pub_type: 杂志文章
doi:10.1109/42.276141
更新日期:1994-01-01 00:00:00
abstract::Studies reported in the literature indicate that breast cancer risk is associated with mammographic densities. An objective, repeatable, and a quantitative measure of risk derived from mammographic densities will be of considerable use in recommending alternative screening paradigms and/or preventive measures. However...
journal_title:IEEE transactions on medical imaging
pub_type: 杂志文章
doi:10.1109/42.938247
更新日期:2001-08-01 00:00:00
abstract::Transmit arrays have been developed to mitigate the RF field inhomogeneity commonly observed in high field magnetic resonance imaging (MRI), typically above 3T. To this end, the knowledge of the RF complex-valued B1 transmit-sensitivities of each independent radiating element has become essential. This paper details a...
journal_title:IEEE transactions on medical imaging
pub_type: 杂志文章
doi:10.1109/TMI.2014.2322440
更新日期:2014-08-01 00:00:00
abstract::The point spread function (PSF) of a ring PET tomograph is known to be spatially variant and difficult to obtain because it must be reconstructed from projections. A mathematical model was developed to simulate the data acquisition from a point source and to reconstruct the PSF, taking into account weighting functions...
journal_title:IEEE transactions on medical imaging
pub_type: 杂志文章
doi:10.1109/42.158942
更新日期:1992-01-01 00:00:00
abstract::This editorial introduces the Special Issue on Simulation and Synthesis in Medical Imaging. In this editorial, we define so-far ambiguous terms of simulation and synthesis in medical imaging. We also briefly discuss the synergistic importance of mechanistic (hypothesis-driven) and phenomenological (data-driven) models...
journal_title:IEEE transactions on medical imaging
pub_type: 社论
doi:10.1109/TMI.2018.2800298
更新日期:2018-03-01 00:00:00
abstract::A two-stage algorithm for extraction of the ventricular chambers (endocardial surfaces) in flow-enhanced magnetic resonance images is described. In the first stage, the approximate locations and sizes of the endocardial surfaces are determined by intensity thresholding. In the second stage, points on each approximated...
journal_title:IEEE transactions on medical imaging
pub_type: 杂志文章
doi:10.1109/42.370402
更新日期:1995-01-01 00:00:00
abstract::A common challenge when performing surface-based registration of images is ensuring that the surfaces accurately represent consistent anatomical boundaries. Image segmentation may be difficult in some regions due to either poor contrast, low slice resolution, or tissue ambiguities. To address this, we present a novel ...
journal_title:IEEE transactions on medical imaging
pub_type: 杂志文章
doi:10.1109/TMI.2015.2443978
更新日期:2015-12-01 00:00:00
abstract::We introduce a multi-region model for simultaneous segmentation of medical images. In contrast to many other models, geometric constraints such as inclusion and exclusion between the regions are enforced, which makes it possible to correctly segment different regions even if the intensity distributions are identical. ...
journal_title:IEEE transactions on medical imaging
pub_type: 杂志文章
doi:10.1109/TMI.2012.2218117
更新日期:2013-02-01 00:00:00
abstract::Transmembrane voltage-sensitive fluorescent dyes are used to study electrical activity in hearts. Green and red fluorescence emissions from di-4-ANEPPS excited with 488 nm light indicate both transmembrane voltage changes and heart movement. We have previously shown that the ratio, green fluorescence divided by red fl...
journal_title:IEEE transactions on medical imaging
pub_type: 杂志文章
doi:10.1109/TMI.2005.861019
更新日期:2006-01-01 00:00:00
abstract::Accurate gain control of PET detectors is a prerequisite for quantitative accuracy. A shift in the 511 keV peak position can lead to errors in scatter correction, degrading quantitation. The PET detectors in a PET/MR scanner are subject to thermal transients due to eddy currents induced during gradient-intensive MRI s...
journal_title:IEEE transactions on medical imaging
pub_type: 杂志文章
doi:10.1109/TMI.2020.3022321
更新日期:2021-01-01 00:00:00
abstract::An automatic system is presented to find the location of the major anatomical structures in color fundus photographs; the optic disc, the macula, and the vascular arch. These structures are found by fitting a single point-distribution-model to the image, that contains points on each structure. The method can handle op...
journal_title:IEEE transactions on medical imaging
pub_type: 杂志文章
doi:10.1109/TMI.2006.885336
更新日期:2007-01-01 00:00:00
abstract::Computed tomography (CT) imaging is an essential tool in various clinical diagnoses and radiotherapy treatment planning. Since CT image intensities are directly related to positron emission tomography (PET) attenuation coefficients, they are indispensable for attenuation correction (AC) of the PET images. However, due...
journal_title:IEEE transactions on medical imaging
pub_type: 杂志文章
doi:10.1109/TMI.2015.2461533
更新日期:2016-01-01 00:00:00
abstract::A convenient way to analyze blood-oxygen-level-dependent functional magnetic resonance imaging data consists of modeling the whole brain as a stationary, linear system characterized by its transfer function: the hemodynamic response function (HRF). HRF estimation, though of the greatest interest, is still under invest...
journal_title:IEEE transactions on medical imaging
pub_type: 临床试验,杂志文章
doi:10.1109/TMI.2004.831221
更新日期:2004-08-01 00:00:00
abstract::Magnetic resonance fingerprinting (MRF) is a quantitative imaging technique that can simultaneously measure multiple important tissue properties of human body. Although MRF has demonstrated improved scan efficiency as compared to conventional techniques, further acceleration is still desired for translation into routi...
journal_title:IEEE transactions on medical imaging
pub_type: 杂志文章
doi:10.1109/TMI.2019.2899328
更新日期:2019-10-01 00:00:00
abstract::Most existing CNNs-based segmentation methods rely on local appearances learned on the regular image grid, without consideration of the object global information. This article aims to embed the object global geometric information into a learning framework via the classical geodesic active contours (GAC). We propose a ...
journal_title:IEEE transactions on medical imaging
pub_type: 杂志文章
doi:10.1109/TMI.2020.3022693
更新日期:2021-01-01 00:00:00
abstract::Cardiac motion estimation is very important in understanding cardiac dynamics and in noninvasive diagnosis of heart disease. Magnetic resonance (MR) imaging tagging is a technique for measuring heart deformations. In cardiac tagged MR images, a set of dark lines are noninvasively encoded within myocardial tissue provi...
journal_title:IEEE transactions on medical imaging
pub_type: 杂志文章
doi:10.1109/42.929616
更新日期:2001-06-01 00:00:00
abstract::Computerized detection of clustered microcalcifications (MCs) in mammograms often suffers from the occurrence of false positives (FPs), which can vary greatly from case to case. We investigate how to apply statistical estimation to determine the number of FPs that are present in a detected MC lesion. First, we describ...
journal_title:IEEE transactions on medical imaging
pub_type: 杂志文章
doi:10.1109/TMI.2017.2654799
更新日期:2017-05-01 00:00:00
abstract::Magnetic particle imaging (MPI) is able to provide high temporal and good spatial resolution, high signal to noise ratio and sensitivity. Furthermore, it is a truly quantitative method as its signal strength is proportional to the concentration of its tracer, superparamagnetic iron oxide nanoparticles (SPIOs), over a ...
journal_title:IEEE transactions on medical imaging
pub_type: 杂志文章
doi:10.1109/TMI.2016.2559538
更新日期:2016-10-01 00:00:00
abstract::A new reconstruction method, coined MIRAGE, is presented for accurate, fast, and robust parameter mapping of multiple-echo gradient-echo (MEGE) imaging, the basis sequence of novel quantitative magnetic resonance imaging techniques such as water content and susceptibility mapping. Assuming that the temporal signal can...
journal_title:IEEE transactions on medical imaging
pub_type: 杂志文章
doi:10.1109/TMI.2017.2771504
更新日期:2018-02-01 00:00:00
abstract::Conventional Doppler ultrasound is useful for visualizing fast blood flow in large resolvable vessels. However, frame rate and tissue clutter caused by movement of the patient or sonographer make visualizing slow flow with ultrasound difficult. Patient and sonographer motion causes spectral broadening of the clutter s...
journal_title:IEEE transactions on medical imaging
pub_type: 杂志文章
doi:10.1109/TMI.2017.2714901
更新日期:2017-09-01 00:00:00
abstract::Most X-ray fluoroscopy systems are stationary and impose restrictions on the measurement of dynamic joint motion; for example, knee-joint kinematics during gait is usually measured with the subject ambulating on a treadmill. We developed a computer-controlled, mobile, biplane, X-ray fluoroscopy system to track human b...
journal_title:IEEE transactions on medical imaging
pub_type: 杂志文章
doi:10.1109/TMI.2015.2473168
更新日期:2016-01-01 00:00:00
abstract::When more than two elemental materials are present in a given object, material quantification may not be robust and accurate when the routine two-material decomposition scheme in current dual energy CT imaging is employed. In this work, we present an innovative scheme to accomplish accurate three-material decompositio...
journal_title:IEEE transactions on medical imaging
pub_type: 杂志文章
doi:10.1109/TMI.2020.2990347
更新日期:2020-11-01 00:00:00
abstract::A software system, CTIP, written in Fortran is discussed which remaps the computerized tomography (CT) image gray level so that both the lung and heart regions are clearly visible with a "natural anatomical appearance." The system is adaptive to image statistics derived from the gray-level histogram of the entire imag...
journal_title:IEEE transactions on medical imaging
pub_type: 杂志文章
doi:10.1109/TMI.1986.4307736
更新日期:1986-01-01 00:00:00
abstract::The watershed transform has interesting properties that make it useful for many different image segmentation applications: it is simple and intuitive, can be parallelized, and always produces a complete division of the image. However, when applied to medical image analysis, it has important drawbacks (oversegmentation...
journal_title:IEEE transactions on medical imaging
pub_type: 杂志文章
doi:10.1109/TMI.2004.824224
更新日期:2004-04-01 00:00:00
abstract::Almost all magnetic resonance electrical impedance tomography (MREIT) reconstruction algorithms proposed to date assume isotropic conductivity in order to simplify the image reconstruction. However, it is well known that most of biological tissues have anisotropic conductivity values. In this study, four novel anisotr...
journal_title:IEEE transactions on medical imaging
pub_type: 杂志文章
doi:10.1109/TMI.2011.2171192
更新日期:2012-03-01 00:00:00
abstract::Regularization is desirable for image reconstruction in emission tomography. A powerful regularization method is the penalized-likelihood (PL) reconstruction algorithm (or equivalently, maximum a posteriori reconstruction), where the sum of the likelihood and a noise suppressing penalty term (or Bayesian prior) is opt...
journal_title:IEEE transactions on medical imaging
pub_type: 杂志文章
doi:10.1109/TMI.2003.816960
更新日期:2003-09-01 00:00:00
abstract::For fully characterizing renal cell carcinoma (RCC), information about the 3D tissue microstructure is essential. Histopathology, which represents the current diagnostic gold standard, is destructive and only provides 2D information. 3D X-ray histology endeavors to overcome these limitations by generating 3D data. In ...
journal_title:IEEE transactions on medical imaging
pub_type: 杂志文章
doi:10.1109/TMI.2019.2952028
更新日期:2020-05-01 00:00:00
abstract::Segmentation of the wrist bones in CT images has been frequently used in different clinical applications including arthritis evaluation, bone age assessment and image-guided interventions. The major challenges include non-uniformity and spongy textures of the bone tissue as well as narrow inter-bone spaces. In this wo...
journal_title:IEEE transactions on medical imaging
pub_type: 杂志文章
doi:10.1109/TMI.2016.2529500
更新日期:2016-08-01 00:00:00
abstract::We propose an anatomy-based approach for an efficient construction of a three-dimensional human normal cerebral arterial model from segmented and skeletonized angiographic data. The centerline-based model is used for an accurate angiographic data representation. A vascular tree is represented by tubular segments and b...
journal_title:IEEE transactions on medical imaging
pub_type: 杂志文章
doi:10.1109/tmi.2005.845041
更新日期:2005-04-01 00:00:00
abstract::In picture archiving and communications systems (PACS), images need to be displayed in standardized ways for radiologists' interpretations. However, for most radiographs acquired via computed radiography (CR), digital radiography (DR), or digitized films, the image orientation is undetermined because of the variations...
journal_title:IEEE transactions on medical imaging
pub_type: 杂志文章
doi:10.1109/tmi.2006.880677
更新日期:2006-10-01 00:00:00