Homogeneous DNA sensing using enzyme-inhibiting DNA aptamers.

Abstract:

:A novel aptameric enzyme subunit (AES) which can detect target DNAs has been developed. AES is an enzyme-inhibiting aptamer bearing a target-molecule binding site which can allosterically control enzymatic activity. The thrombin-inhibiting aptamer bearing a G-quartet structure was chosen as the enzyme-inhibiting aptamer. The stem-and-loop structure, which contains a strand complementary to the target DNA, was inserted into the G-quartet structure of the thrombin-inhibiting aptamer to disrupt the G-quartet structure through the hybridization of the target DNA with the complementary strand in the AES. The disruption of the G-quartet structure led to a decrease of the inhibitory activity of the whole aptameric complex. Using this designed aptamer, we were able to detect target DNAs by measuring the thrombin activity in a homogeneous solution without bound/free separation, and the lower detection limit was 20 nM.

authors

Yoshida W,Sode K,Ikebukuro K

doi

10.1016/j.bbrc.2006.07.069

subject

Has Abstract

pub_date

2006-09-15 00:00:00

pages

245-52

issue

1

eissn

0006-291X

issn

1090-2104

pii

S0006-291X(06)01595-6

journal_volume

348

pub_type

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