Quality assessment of microarray experiments.

Abstract:

OBJECTIVES:We describe a quality assurance procedure to maximize the value of oligonucleotide microarray expression profiles. DESIGN, METHODS, AND RESULTS:Background microarray noise was 82.2+/-54.5 and 51.8+/-12.4 units, respectively, before and after enacting the program (P<0.0001). We also noted improved concordance of microarray expression fold-changes for selected genes with results of RT-PCR validation. CONCLUSIONS:This multi-step procedure, including quantification of RNA sample degradation and detection of outlier data points, has increased data quality from our microarray facility.

journal_name

Clin Biochem

journal_title

Clinical biochemistry

authors

Carter DE,Robinson JF,Allister EM,Huff MW,Hegele RA

doi

10.1016/j.clinbiochem.2005.04.010

subject

Has Abstract

pub_date

2005-07-01 00:00:00

pages

639-42

issue

7

eissn

0009-9120

issn

1873-2933

pii

S0009-9120(05)00118-9

journal_volume

38

pub_type

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