Development of a strain-specific assay for detection of viable Lactobacillus sp. HOFG1 after application to cattle feed.

Abstract:

:A strain-specific assay was developed for the detection of viable Lactobacillus on cattle feed. The DNA sequences of the 16S rRNA gene and four different 16S/23S rRNA intergenic spacer regions (ISR) from Lactobacillus sp. HOFG1 were determined. Based on these sequences, a strain-specific primer was designed for the amplification of one of the ISRs. When combined with a Lactobacillus group primer, the polymerase chain reaction (PCR) assay detected only Lactobacillus sp. HOFG1 and not other closely related L. animalis or L. murinus strains. The feed assay uses a combination of enrichment culturing and PCR to detect and enumerate viable Lactobacillus sp. HOFG1 after its application onto cattle feed. The high degree of primer specificity and use of selective culturing allows for the detection of viable Lactobacillus which is useful in tracking bacteria applied to complex feed mixtures that contain a high background of endogenous bacteria.

journal_name

J Microbiol Methods

authors

Flint JF,Angert ER

doi

10.1016/j.mimet.2004.12.002

subject

Has Abstract

pub_date

2005-05-01 00:00:00

pages

235-43

issue

2

eissn

0167-7012

issn

1872-8359

pii

S0167-7012(04)00357-4

journal_volume

61

pub_type

杂志文章
  • Simultaneous detection of six human diarrheal pathogens by using DNA microarray combined with tyramide signal amplification.

    abstract::Multiplex PCR and DNA microarray were combined with tyramide signal amplification (TSA) to develop a reliable method suitable for simultaneous detection of six species of human diarrheal pathogens (Yersinia enterocolitica, Shigella spp, Salmonella typhi, Brucella spp, Vibrio cholera and Escherichia coli O157:H7). Mean...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2008.06.020

    authors: Jin D,Qi H,Chen S,Zeng T,Liu Q,Wang S

    更新日期:2008-10-01 00:00:00

  • Development of a multiplex PCR assay based on the pilA gene sequences to detect different types of Acidovorax citrulli.

    abstract::Bacterial fruit blotch (BFB) of cucurbits, caused by Acidovorax citrulli, is a major threat to commercial watermelon and melon production worldwide. At present, there are at least two genetically distinct sub-populations (group I and II) of A. citrulli that differ in host preference among cucurbit species and copper s...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2019.02.003

    authors: Yang YW,Zhao M,Zhang LQ,Qiao P,Bai X,Zhang XX,Walcott RR,Guan W,Zhao TC

    更新日期:2019-03-01 00:00:00

  • Comparative evaluation of two matrix-assisted laser desorption ionization time-of-flight mass spectrometry (MALDI-TOF MS) systems, Vitek MS and Microflex LT, for the identification of Gram-positive cocci routinely isolated in clinical microbiology laborat

    abstract::We evaluated the performance of two MALDI-TOF MS systems for the identification of clinically important Gram-positive cocci. Vitek MS and Microflex LT correctly identified 97.2% and 94.7%, respectively. Both systems offer reliable and rapid identification of clinically important Gram-positive cocci isolated in clinica...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2015.03.020

    authors: Lee M,Chung HS,Moon HW,Lee SH,Lee K

    更新日期:2015-06-01 00:00:00

  • Strain development and optimized fermentation conditions for blood meal using Aspergillus niger and Aspergillus oryzae.

    abstract::To hydrolyze blood meal (BM) effectively, two mutants were generated using ultra-violet mutagenesis. Single-factor experiments, the Plackett-Burman technique and response surface methodology were used to optimize the fermentation conditions. This study successfully generated a mutant and innovatively provided importan...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2014.03.017

    authors: Zheng Y,Zhang H,Wang D,Gao P,Shan A

    更新日期:2014-06-01 00:00:00

  • A simple method for direct isolation of N-acyl-L-homoserine lactone mediated biofilm-forming rhizobacteria from roots.

    abstract::Plant-associated bacteria produce quorum sensing (QS) signals for community (biofilm) formation and functioning in the rhizosphere. The QS-positive biofilm-forming rhizobacteria that excel benefits to the plants are now gaining increased importance for agricultural use due to their high competitiveness. However, there...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2018.11.018

    authors: Begum JF,Tamilarasi M,Pushpakanth P,Balachandar D

    更新日期:2019-01-01 00:00:00

  • Direct identification of mycobacteria from liquid media using a triplex real-time PCR coupled with pyrosequencing method.

    abstract::Culture in enriched broth, as well as on a solid medium, is recommended for primary isolation of mycobacteria. With the introduction of liquid mycobacterial culture methods, a substantial workload regarding the identification of culture-recovered mycobacterial species, particularly Mycobacterium tuberculosis complex (...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2015.10.011

    authors: Kim JU,Cha CH,Park SH

    更新日期:2015-12-01 00:00:00

  • Development of real-time PCR for the differential detection and quantification of Ureaplasma urealyticum and Ureaplasma parvum.

    abstract::Ureaplasma parvum and Ureaplasma urealyticum are recently recognized species of the genus Ureaplasma. In humans, Ureaplasma spp. can be found on mucosal surfaces, primarily in the respiratory and urogenital tracts. They have been implicated in various human diseases such as nongonococcal urethritis, intrauterine infec...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2004.08.005

    authors: Mallard K,Schopfer K,Bodmer T

    更新日期:2005-01-01 00:00:00

  • A TaqMan-PCR protocol for quantification and differentiation of the phytopathogenic Clavibacter michiganensis subspecies.

    abstract::Real-time TaqMan-PCR assays were developed for detection, differentiation and absolute quantification of the pathogenic subspecies of Clavibacter michiganensis (Cm) in one single PCR run. The designed primer pair, targeting intergenic sequences of the rRNA operon (ITS) common in all subspecies, was suitable for the am...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/s0167-7012(02)00152-5

    authors: Bach HJ,Jessen I,Schloter M,Munch JC

    更新日期:2003-01-01 00:00:00

  • Ethanol treatment does not inactivate spore-forming bacteria - A cautionary note about the safe transport of bacteria prior to identification by MALDI-TOF MS.

    abstract::Treatment with 70% ethanol has been proposed as a safe and effective way to inactive bacteria for transport between laboratories prior to identification by MALDI-TOF MS. Ethanol alone does not inactivate spore-forming bacteria and additional chemical or physical treatment is necessary to guarantee inactivation of bact...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2020.105893

    authors: Palombo EA

    更新日期:2020-05-01 00:00:00

  • Multivariate analysis of bacterial volatile compound profiles for discrimination between selected species and strains in vitro.

    abstract::Volatile compounds (VCs) are produced by all microorganisms as part of their normal metabolism. The aim of this study was to determine whether bacterial VC profiles could be used to discriminate between selected bacterial species and strains in vitro. Selected Ion Flow Tube Mass Spectrometry (SIFT-MS) was used to quan...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2010.12.001

    authors: Thorn RM,Reynolds DM,Greenman J

    更新日期:2011-02-01 00:00:00

  • Establishment of a semi-automated pathogen DNA isolation from whole blood and comparison with commercially available kits.

    abstract::Molecular methods for bacterial pathogen identification are gaining increased importance in routine clinical diagnostic laboratories. Achieving reliable results using DNA based technologies is strongly dependent on pre-analytical processes including isolation of target cells and their DNA of high quality and purity. I...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2011.03.003

    authors: Wiesinger-Mayr H,Jordana-Lluch E,Martró E,Schoenthaler S,Noehammer C

    更新日期:2011-06-01 00:00:00

  • Design and evaluation of an oligonucleotide-microarray for the detection of different species of the genus Kitasatospora.

    abstract::An oligonucleotide-microarray method was developed for the detection of Kitasatospora species in soil samples. The 16S-23S rDNA internal transcribed spacer (ITS) sequence of these antibiotics-producing actinomycetes was applied to design short oligonucleotide probes. Two different 26-mers were synthesized, specific to...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2005.07.012

    authors: Günther S,Groth I,Grabley S,Munder T

    更新日期:2006-05-01 00:00:00

  • Quantitative agar-invasion assay.

    abstract::A new method for quantification of yeast invasion into the agar medium was developed. Classical agar-invasion assays have been the methods of choice for determination of yeast invasion, but their main disadvantage is the lack of quantification. Our new Quantitative yeast agar-invasion test allows for quantitative meas...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2008.02.009

    authors: Zupan J,Raspor P

    更新日期:2008-05-01 00:00:00

  • Detection of an alkene monooxygenase in vinyl chloride-oxidizing bacteria with GeneFISH.

    abstract::Fluorescence in situ hybridization (FISH) can provide information on the morphology, spatial arrangement, and local environment of individual cells enabling the investigation of intact microbial communities. GeneFISH uses polynucleotide probes and enzymatic signal amplification to detect genes that are present in low ...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2021.106147

    authors: Richards PM,Mattes TE

    更新日期:2021-01-22 00:00:00

  • A quantitative analysis of DNA extraction and purification from compost.

    abstract::We quantified both DNA and humic acid concentrations during the extraction and purification of DNA from compost. The DNA extraction method consisted of bead-beating with SDS for cell lysis, poly(ethylene glycol)-8000 precipitation for preliminary DNA purification, and chromatography on a 10-ml Sephadex G-200 column fo...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/s0167-7012(03)00006-x

    authors: Howeler M,Ghiorse WC,Walker LP

    更新日期:2003-07-01 00:00:00

  • In vitro cell culture methods for investigating Campylobacter invasion mechanisms.

    abstract::Studying the mechanisms of Campylobacter pathogenesis is complicated by the lack of simple animal models that mimic the disease seen in humans. In vitro cell culture methods provide a useful alternative to investigate the interactions between Campylobacter and the host epithelium that occur during infection. In the ge...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章,评审

    doi:10.1016/j.mimet.2004.12.003

    authors: Friis LM,Pin C,Pearson BM,Wells JM

    更新日期:2005-05-01 00:00:00

  • A method for the determination of pyruvate carboxylase activity during the glutamic acid fermentation with Corynebacterium glutamicum.

    abstract::A discontinuous lactate dehydrogenase coupled assay is described for the evaluation of the pyruvate carboxylase activity (Pc, EC 6.4.1.1) in a glutamate overproducing strain of Corynebacterium glutamicum. After an initial permeabilisation period of the cells, the method consisted of the fluorometric determination of t...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/s0167-7012(99)00104-9

    authors: Uy D,Delaunay S,Engasser J,Goergen J

    更新日期:1999-12-01 00:00:00

  • Comparison of the Diversilab® system with multi-locus sequence typing and pulsed-field gel electrophoresis for the characterization of Streptococcus agalactiae invasive strains.

    abstract::Streptococcus agalactiae (or group B streptococcus; GBS) is a leading cause of neonatal morbidity and mortality in the developed countries. Several epidemiological typing tools have been developed for GBS to investigate the association between genotype and disease and to assess genetic variations within genogroups. Th...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2011.02.010

    authors: Al Nakib M,Longo M,Tazi A,Billoet A,Raymond J,Trieu-Cuot P,Poyart C

    更新日期:2011-05-01 00:00:00

  • A standardized microdilution susceptibility test to determine the resistance capacity of human pathogenic bacteria towards hydrogen peroxide.

    abstract::The susceptibility protocol established in this study takes into account that complex media are capable to buffer H2O2 which otherwise may adulterate test results. Furthermore, we demonstrate that clinical isolates of Staphylococcus aureus showed a higher resistance against H2O2 than Streptococcus pyogenes after 30 mi...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2018.11.001

    authors: Menschner L,Falke U,Töpfner N,Berner R

    更新日期:2018-12-01 00:00:00

  • Immunoglobulin cleavage by the streptococcal cysteine protease IdeS can be detected using protein G capture and mass spectrometry.

    abstract::The immunoglobulin degrading enzyme of Streptococcus pyogenes, IdeS, is an unusual cysteine protease produced by group A streptococci for which the only known substrate is immunoglobulin G (IgG). To date, IdeS has not been found to cleave any of the known synthetic substrates that other cysteine proteases hydrolyse, t...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2007.04.017

    authors: Hess JL,Porsch EA,Shertz CA,Boyle MD

    更新日期:2007-08-01 00:00:00

  • Rapid antibiotic susceptibility phenotypic characterization of Staphylococcus aureus using automated microscopy of small numbers of cells.

    abstract::Staphylococcus aureus remains a leading, virulent pathogen capable of expressing complex drug resistance that requires up to 2-4 days for laboratory analysis. In this study, we evaluate the ability of automated microscopy of immobilized live bacterial cells to differentiate susceptible from non-susceptible responses o...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2013.12.021

    authors: Price CS,Kon SE,Metzger S

    更新日期:2014-03-01 00:00:00

  • An array of multiplex PCR assays for detection of staphylococcal chromosomal cassette mec (SCCmec) types among staphylococcal isolates.

    abstract::Staphylococcal Cassette Chromosome mec (SCCmec) element plays a key role in development of resistance by carrying different resistance factors. Therefore, routine and rapid diagnostic approach is considered advantageous for the easy detection of SCCmec elements. So, here we have described the use of three sets of mult...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2019.105733

    authors: Bhowmik D,Das BJ,Pandey P,Chetri S,Chanda DD,Bhattacharjee A

    更新日期:2019-11-01 00:00:00

  • A panel of bioluminescent whole-cell bacterial biosensors for the screening for new antibacterial substances from natural extracts.

    abstract::Whole-cell bacterial biosensors can be applied for the screening of antibacterial properties of extracts. We constructed a biosensor panel consisting of four different bacterial biosensor strains: Escherichia, Staphylococcus, Acinetobacter and Pseudomonas for expanded screening potential. The functionality of the pane...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2020.106083

    authors: Poikulainen E,Tienaho J,Sarjala T,Santala V

    更新日期:2020-10-14 00:00:00

  • Development of a rapid and simple immunochromatographic assay to identify Vibrio parahaemolyticus.

    abstract::To rapidly and simply determine whether or not bacterial colonies growing on agar were Vibrio parahaemolyticus, we developed an immunochromatographic assay (VP-ICA) using two different monoclonal antibodies (designated mAb-VP34 and mAb-VP109) against the delta subunit of V. parahaemolyticus-F0F1 ATP synthase. The epit...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2015.06.009

    authors: Sakata J,Kawatsu K,Iwasaki T,Kumeda Y

    更新日期:2015-09-01 00:00:00

  • Evaluation of propidium monoazide (PMA) treatment directly on membrane filter for the enumeration of viable but non cultivable Legionella by qPCR.

    abstract::A PMA (propidium monoazide) pretreatment protocol, in which PMA is applied directly to membrane filters, was developed for the PCR-based quantification (PMA-qPCR) of viable Legionella pneumophila. Using this method, the amplification of DNA from membrane-damaged L. pneumophila was strongly inhibited for samples contai...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2011.12.010

    authors: Slimani S,Robyns A,Jarraud S,Molmeret M,Dusserre E,Mazure C,Facon JP,Lina G,Etienne J,Ginevra C

    更新日期:2012-02-01 00:00:00

  • An integrated culture and real-time PCR method to assess viability of disinfectant treated Bacillus spores using robotics and the MPN quantification method.

    abstract::Using robotics and the MPN technique, a 96-microwell method was developed to compare two procedures for enumeration of viable chlorine-treated B. atrophaeus spores: broth-culture enrichment followed by real-time polymerase chain reaction analysis; and filter plating on agar. Recoveries of chlorine-treated spores were ...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2007.07.011

    authors: Varughese EA,Wymer LJ,Haugland RA

    更新日期:2007-10-01 00:00:00

  • Detection of respiratory enzyme activity in Giardia cysts and Cryptosporidium oocysts using redox dyes and immunofluorescence techniques.

    abstract::The fluorescent redox dye 5-cyano-2,3-ditolyl tetrazolium chloride (CTC), combined with fluorescein-labeled antibodies, was tested for the simultaneous detection of the respiratory electron transport system (ETS) activity and enumeration of Giardia cysts and Cryptosporidium oocysts by spectral microfluorometry and epi...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/s0167-7012(01)00249-4

    authors: Iturriaga R,Zhang S,Sonek GJ,Stibbs H

    更新日期:2001-07-30 00:00:00

  • Development of a L-rhamnose and D-arabitol supplemented MacConkey agar to identify pathogenic Yersinia enterocolitica among environmental Yersinias in swine production wastes.

    abstract::Supplemented MacConkey agar with L-rhamnose and D-arabitol distinguishes pathogenic from environmental strains of Yersinia enterocolitica recovered from swine production wastes. This medium has a sensitivity of 100% and a specificity of 97.4%. ...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2004.01.014

    authors: Shehee MW,Sobsey MD

    更新日期:2004-05-01 00:00:00

  • Optimization of media components for production of antimicrobial compound by Brevibacillus brevis EGS9 isolated from mangrove ecosystem.

    abstract::The aim of the present study was to show the efficiency of multi-factorial experimental design to investigate factors affecting the antimicrobial compound production by Brevibacillus brevis EGS9 isolated from mangrove sediment soil. The isolate utilizing different carbon and nitrogen sources showed different growth ch...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2017.09.010

    authors: T A,P SK

    更新日期:2017-11-01 00:00:00

  • gyrB as a phylogenetic discriminator for members of the Bacillus anthracis-cereus-thuringiensis group.

    abstract::Bacillus anthracis, the causative agent of the human disease anthrax, Bacillus cereus, a food-borne pathogen capable of causing human illness, and Bacillus thuringiensis, a well-characterized insecticidal toxin producer, all cluster together within a very tight clade (B. cereus group) phylogenetically and are indistin...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2003.11.004

    authors: La Duc MT,Satomi M,Agata N,Venkateswaran K

    更新日期:2004-03-01 00:00:00