Development of real-time PCR for the differential detection and quantification of Ureaplasma urealyticum and Ureaplasma parvum.

Abstract:

:Ureaplasma parvum and Ureaplasma urealyticum are recently recognized species of the genus Ureaplasma. In humans, Ureaplasma spp. can be found on mucosal surfaces, primarily in the respiratory and urogenital tracts. They have been implicated in various human diseases such as nongonococcal urethritis, intrauterine infections in association with adverse pregnancy outcome and fetal morbidity, and pneumonitis in immunocompromised hosts. We have developed two quantitative real-time PCR assays to differentially detect U. parvum and U. urealyticum. Based upon the sequence information of the urease gene (ureB), we designed two TaqMan primer and probe combinations specific for U. parvum and U. urealyticum, respectively. The assays did not react with nucleic acid preparations from 16 bacterial species commonly encountered in relevant clinical specimens, including seven urease-producing species. Each assay had a detection limit of approximately five copies per reaction of the respective gene target. The results suggest that these assays are both sensitive and specific for U. parvum and U. urealyticum. Further investigation of both assays using clinical specimens is appropriate.

journal_name

J Microbiol Methods

authors

Mallard K,Schopfer K,Bodmer T

doi

10.1016/j.mimet.2004.08.005

subject

Has Abstract

pub_date

2005-01-01 00:00:00

pages

13-9

issue

1

eissn

0167-7012

issn

1872-8359

pii

S0167-7012(04)00225-8

journal_volume

60

pub_type

杂志文章
  • Evaluation of 5'-nuclease and hybridization probe assays for the detection of shiga toxin-producing Escherichia coli in human stools.

    abstract::5'-Nuclease and a hybridization probe assays for the detection of shiga toxin-producing Escherichia coli were validated with regard to selectivity, analytical sensitivity, reproducibility and clinical performance. Both assays were capable of detecting the classical stx(1) and stx(2) genes when challenged with referenc...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2007.05.016

    authors: Schuurman T,Roovers A,van der Zwaluw WK,van Zwet AA,Sabbe LJ,Kooistra-Smid AM,van Duynhoven YT

    更新日期:2007-09-01 00:00:00

  • Comparative diagnostic efficacy of recombinant LLO and PI-PLC-based ELISAs for detection of listeriosis in animals.

    abstract::The present study for the first time evaluates the serodiagnostic efficacy of two recombinant antigens namely, listeriolysin O (rLLO) and phosphatidyl-inositol phospholipase C (rPI-PLC). Indirect ELISA with the above recombinant antigens was used on samples collected from bovines (n=106), goats (n=138) and pigs (n=92)...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2017.04.005

    authors: Suryawanshi RD,Malik SVS,Jayarao B,Chaudhari SP,Savage E,Vergis J,Kurkure NV,Barbuddhe SB,Rawool DB

    更新日期:2017-06-01 00:00:00

  • Strain discrimination among B. anthracis and related organisms by characterization of bclA polymorphisms using PCR coupled with agarose gel or microchannel fluidics electrophoresis.

    abstract::The bclA gene codes for the protein backbone of the exosporium glycoprotein BclA of B. anthracis. BclA has a central collagen-like region formed by polymorphic GXX repeats and conserved amino- and carboxy-termini. It is noted here that the bclA gene is also present in the genome of Bacillus cereus and Bacillus thuring...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2005.04.032

    authors: Castanha ER,Swiger RR,Senior B,Fox A,Waller LN,Fox KF

    更新日期:2006-01-01 00:00:00

  • Development of a rapid quantitative PCR assay for direct detection and quantification of culturable and non-culturable Escherichia coli from agriculture watersheds.

    abstract::A real-time quantitative polymerase chain reaction (Q-PCR) assay was developed for detecting and quantifying Escherichia coli in water samples from agricultural watersheds. The assay included optimization of DNA extraction and purification from water samples, and Q-PCR amplification conditions using newly designed spe...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2007.02.016

    authors: Khan IU,Gannon V,Kent R,Koning W,Lapen DR,Miller J,Neumann N,Phillips R,Robertson W,Topp E,van Bochove E,Edge TA

    更新日期:2007-06-01 00:00:00

  • Mass spectrometry and tandem mass spectrometry characterization of protein patterns, protein markers and whole proteomes for pathogenic bacteria.

    abstract::There have been many recent reviews published on MALDI-TOF MS (matrix assisted laser desorption/ionization time-of-flight) MS (mass spectrometry) for identification of bacteria particularly with relevance to clinical microbiology. MALDI-TOF MS is now a mature technique for bacterial identification with great promise. ...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章,评审

    doi:10.1016/j.mimet.2013.01.004

    authors: Intelicato-Young J,Fox A

    更新日期:2013-03-01 00:00:00

  • Fluorescence in situ hybridisation coupled to ultra small immunogold detection to identify prokaryotic cells using transmission and scanning electron microscopy.

    abstract::We describe a method based on fluorescence in situ hybridisation (FISH) that allows the identification of individual cells by electron microscopy. We hybridised universal and specific fluorescein-labelled oligonucleotide probes to the ribosomal RNA of prokaryotic microorganisms in heterogeneous cell mixtures. We then ...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2005.02.018

    authors: Gérard E,Guyot F,Philippot P,López-García P

    更新日期:2005-10-01 00:00:00

  • Establishment and validation of a 384-well antibacterial assay amenable for high-throughput screening and combination testing.

    abstract::A 384-well-based antibacterial assay amenable for high-throughput screening and combination testing is described. The assay uses 100-500nL of test compounds and tolerates up to 2.5% dimethyl sulfoxide concentrations. It can be used for screening compound libraries and testing combinatory/synergistic/antagonistic effec...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2015.09.019

    authors: Mishra A,Dobritsa SV,Crouch ML,Rabenstein J,Lee JX,Dhakshinamoorthy S

    更新日期:2015-11-01 00:00:00

  • A novel nucleic lateral flow assay for screening of PHA-producing haloarchaea.

    abstract::Polyhydroxyalkanoates (PHAs) are important for biodegradable plastic production, and prokaryotes play a very important role in PHA production. PHA synthase is a key enzyme for the polymerization of PHAs. There are four classes of PHA synthase. The phaC gene is necessary for the production of all classes of PHA synthas...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2015.06.012

    authors: Muangsuwan W,Ruangsuj P,Chaichanachaicharn P,Yasawong M

    更新日期:2015-09-01 00:00:00

  • Isolation of cDNA sequences encoding the MAP kinase HOG1 and the MAP kinase kinase PBS2 genes of the fungus Alternaria tenuissima through a genetic approach.

    abstract::Alternaria tenuissima is a fungus widely present in the environment and causes diseases in plants and humans in the world. In this study, we constructed an A. tenuissima cDNA expression library in a centromeric yeast vector that allows the isolation of functional cDNA sequences from this environmental and pathogenic f...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2006.12.021

    authors: Feng F,Qiu D,Jiang L

    更新日期:2007-04-01 00:00:00

  • Use of competitive DNA hybridization to identify differences in the genomes of bacteria.

    abstract::Although recent technological advances in DNA sequencing and computational biology now allow scientists to compare entire microbial genomes, comparisons of closely related bacterial species and individual isolates by whole-genome sequencing approaches remains prohibitively expensive for most laboratories. Here we repo...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2005.12.006

    authors: Shanks OC,Santo Domingo JW,Graham JE

    更新日期:2006-08-01 00:00:00

  • An IC-PCR method for detection of Cryptosporidium and Giardia in natural surface waters in Finland.

    abstract::We developed an immunocapture-based polymerase chain reaction (PCR) assay for simultaneous detection of Cryptosporidium parvum oocysts and Giardia intestinalis cysts in surface water. Using primer pairs Cry9/Cry15 and LaxA/LaxB for Cryptosporidium and Gdh1/Gdh4 for Giardia, the sensitivity of the entire detection proc...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/s0167-7012(02)00047-7

    authors: Rimhanen-Finne R,Hörman A,Ronkainen P,Hänninen ML

    更新日期:2002-08-01 00:00:00

  • Screening for peptides binding on Phytophthora capsici extracts by phage display.

    abstract::Phytophthora blight of pepper is a completely destructive plant disease caused by the oomycete pathogen Phytophthora capsici Leonian. Phytophthora disease is responsible for major losses in pepper production and the pathogen can survive in soil in the absence of the host plant for many years. Currently, there are no e...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2009.04.006

    authors: Park HY,Park HC,Yoon MY

    更新日期:2009-07-01 00:00:00

  • Long-term monitoring of biofilm growth and disinfection using a quartz crystal microbalance and reflectance measurements.

    abstract::A biofilm reactor was constructed to monitor the long-term growth and removal of biofilms as monitored by the use of a quartz crystal microbalance (QCM) and a novel optical method. The optical method measures the reflectance of white light off the surface of the quartz crystal microbalance electrode (gold) for determi...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2006.01.016

    authors: Reipa V,Almeida J,Cole KD

    更新日期:2006-09-01 00:00:00

  • Assessment of Leishmania cell lines expressing high levels of beta-galactosidase as alternative tools for the evaluation of anti-leishmanial drug activity.

    abstract::Leishmaniasis, caused by protozoa belonging to the genus Leishmania, is an important public health problem found in >90 countries and with still limited options for treatment. Development of new anti-leishmanial drugs is an urgent need and the identification of new active compounds is a limiting factor that can be acc...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2019.105732

    authors: da Silva Santos AC,Moura DMN,Dos Santos TAR,de Melo Neto OP,Pereira VRA

    更新日期:2019-11-01 00:00:00

  • Modification of the classical Lancefield assay of group A streptococcal killing to reduce inter-donor variation.

    abstract::The lack of a surrogate-of-immunity assay presents a major barrier to Streptococcus pyogenes research. Modification of the Lancefield assay to include an antibody digestion step reduced inter-donor variation and permitted detection of the anti-streptococcal activity of intravenous immunoglobulin and convalescent serum...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2016.03.015

    authors: Reglinski M,Lynskey NN,Sriskandan S

    更新日期:2016-05-01 00:00:00

  • Development of a novel plasmid vector pTIO-1 adapted for electrotransformation of Porphyromonas gingivalis.

    abstract::We report here the construction of a plasmid vector designed for the efficient electrotransformation of the periodontal pathogen Porphyromonas gingivalis. The novel Escherichia coli-Bacteroides/P. gingivalis shuttle vector, designated pTIO-1, is based on the 11.0-kb E. coli-Bacteroides conjugative shuttle vector, pVAL...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2014.07.032

    authors: Tagawa J,Inoue T,Naito M,Sato K,Kuwahara T,Nakayama M,Nakayama K,Yamashiro T,Ohara N

    更新日期:2014-10-01 00:00:00

  • Methods used for the detection and subtyping of Listeria monocytogenes.

    abstract::Listeria monocytogenes is an important foodborne pathogen responsible for non-invasive and invasive diseases in the elderly, pregnant women, neonates and immunocompromised populations. This bacterium has many similarities with other non-pathogenic Listeria species which makes its detection from food and environmental ...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章,评审

    doi:10.1016/j.mimet.2012.01.002

    authors: Jadhav S,Bhave M,Palombo EA

    更新日期:2012-03-01 00:00:00

  • Rapid detection of Haemophilus parasuis using cross-priming amplification and vertical flow visualization.

    abstract::Haemophilus parasuis infection is of considerable economic importance in the swine industry due to high morbidity and mortality in naive swine populations. Accurate detection and identification of the causative agent are difficult, yet necessary, for disease control. In this study, a simple and rapid method of cross-p...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2017.11.005

    authors: Gou H,Li J,Cai R,Song S,Li M,Yang D,Jiang Z,Li Y,Chu P,Li C

    更新日期:2018-01-01 00:00:00

  • The use of a rapid assay to detect the neuraminidase production in oral Porphyromonas spp. isolated from dogs and humans.

    abstract::Neuraminidase was produced by 32.1% and 28.5% of Porphyromonas from dogs with and without periodontitis, respectively; and by 31.8% of bacteria from humans. The presence of neuraminidase in Porphyromonas spp. suggests that this enzyme can be involved with the pathogenesis of the periodontal disease, and the use of thi...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2013.06.017

    authors: de Assis PR,Nakano V,Senhorinho GN,Avila-Campos MJ

    更新日期:2013-09-01 00:00:00

  • A single-pair method to screen Rickettsia-infected and uninfected whitefly Bemisia tabaci populations.

    abstract::Bacterial endosymbionts such as Rickettsia and Wolbachia play prominent roles in the development and behaviour of their insect hosts, such as whiteflies, aphids, psyllids and mealybugs. Accumulating studies have emphasized the importance of establishing experimental insect populations that are either lacking or bearin...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2019.105797

    authors: Liu Y,Fan ZY,An X,Shi PQ,Ahmed MZ,Qiu BL

    更新日期:2020-01-01 00:00:00

  • WITHDRAWN: Multiplex particle refining system to enhance Cryptosporidium recovery for surface water filtration methods.

    abstract::The Publisher regrets that this article is an accidental duplication of an article that has already been published, http://dx.org/doi:10.1016/j.mimet.2012.12.009. The duplicate article has therefore been withdrawn. ...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2012.12.009

    authors: Pires NM,Dong T

    更新日期:2012-12-20 00:00:00

  • Performance of PCR-based and Bioluminescent assays for mycoplasma detection.

    abstract::Contaminated eukaryotic cell cultures are frequently responsible for unreliable results. Regulatory entities request that cell cultures must be mycoplasma-free. Mycoplasma contamination remains a significant problem for cell cultures and may have an impact on biological analysis since they affect many cell parameters....

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2015.08.010

    authors: Falagan-Lotsch P,Lopes TS,Ferreira N,Balthazar N,Monteiro AM,Borojevic R,Granjeiro JM

    更新日期:2015-11-01 00:00:00

  • 3D-printed microfluidic magnetic preconcentrator for the detection of bacterial pathogen using an ATP luminometer and antibody-conjugated magnetic nanoparticles.

    abstract::Various types of microfluidic systems have been developed to detect bacterial pathogens. However, most of these require enrichment steps that take at least several hours when detecting bacteria that are present with a low number of cells and, in addition, fabrication requires complicated assembly steps. In this study,...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2016.12.001

    authors: Park C,Lee J,Kim Y,Kim J,Lee J,Park S

    更新日期:2017-01-01 00:00:00

  • An evaluation of the impact of clinical bacterial isolates on epithelial cell monolayer integrity by the electric Cell-Substrate Impedance Sensing (ECIS) method.

    abstract::Virulence is the relative capacity of a pathogenic microorganism to cause damage in susceptible host cells such as those found in airway passages and the gut. In this study, the effect of clinical bacterial isolates on the monolayer integrity of cultured human alveolar basal epithelial cells (A549) was evaluated using...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2020.105833

    authors: Nahid MA,Campbell CE,Fong KSK,Barnhill JC,Washington MA

    更新日期:2020-02-01 00:00:00

  • MALDI-TOF MS based identification of food-borne yeast isolates.

    abstract::In this study, food-borne yeast isolates (n=96), comprising at least 33 species, were identified using MALDI-TOF MS and conventional methods (API ID 32 C and Phoenix Yeast ID). Discrepancies of both methods were resolved by sequencing the ITS1-5.8S-rRNA-ITS2 region. For ten isolates, mainly classified to Rhodotorula a...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2014.08.021

    authors: Pavlovic M,Mewes A,Maggipinto M,Schmidt W,Messelhäußer U,Balsliemke J,Hörmansdorfer S,Busch U,Huber I

    更新日期:2014-11-01 00:00:00

  • Variation between observed and true Terminal Restriction Fragment length is dependent on true TRF length and purine content.

    abstract::Terminal Restriction Fragment (TRF) pattern analysis has become a widely used and informative tool for studying microbial communities. Variation between sequence-determined or true TRF length and observed TRF length (TRF drift) has been previously reported and can significantly affect identification of bacterial speci...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/s0167-7012(03)00003-4

    authors: Kaplan CW,Kitts CL

    更新日期:2003-07-01 00:00:00

  • Detection of Ralstonia solanacearum in natural substrates using phage amplification integrated with real-time PCR assay.

    abstract::A sensitive, selective, and rapid protocol for detecting Ralstonia solanacearum from soil and plant tissues was developed based on the integration of the rapid self-replicating ability of bacteriophages with quantitative PCR (q-PCR). Six bacteriophages were isolated and selected for their ability to specifically infec...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2008.11.008

    authors: Kutin RK,Alvarez A,Jenkins DM

    更新日期:2009-03-01 00:00:00

  • A comparison of two approaches to extracting Cryptosporidium DNA from human stools as measured by a real-time PCR assay.

    abstract::Direct extraction of Cryptosporidium DNA from 46 stools by bead-beating, guanidine thiocyanate and silica purification provided slightly lower PCR positivity (93.5% vs. 100%) and higher threshold cycle values (mean 34.93 vs. 28.03; P=0.00) than spin-column extraction from boiled, semi-purified oocyst suspensions. Howe...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2012.02.006

    authors: Elwin K,Robinson G,Hadfield SJ,Fairclough HV,Iturriza-Gómara M,Chalmers RM

    更新日期:2012-04-01 00:00:00

  • Assessing the performance of novel software Strain Solution on automated discrimination of Escherichia coli serotypes and their mixtures using matrix-assisted laser desorption ionization-time of flight mass spectrometry.

    abstract::O157, O26, and O111 are the most important O serogroups of enterohemorrhagic Escherichia coli worldwide. Recently we reported a strategy for discriminating these serotypes from the others using matrix-assisted laser desorption ionization-time of flight mass spectrometry (MALDI-TOF MS) based on the S10-spc-alpha operon...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2015.11.005

    authors: Ojima-Kato T,Yamamoto N,Iijima Y,Tamura H

    更新日期:2015-12-01 00:00:00

  • A single-step transconjugation system for gene deletion in Aggregatibacter actinomycetemcomitans.

    abstract::Aggregatibacter (A.) actinomycetemcomitans is a periodontopathogenic bacterium causing aggressive periodontitis. Here we describe a single-step transconjugation system as novel and easily applicable protocol for site-specific genetic manipulation of A. actinomycetemcomitans. Deletion of PgaC, which is involved in the ...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2018.04.002

    authors: Stumpp NS,Konze SA,Gerardy-Schahn R,Stiesch M,Buettner FFR

    更新日期:2018-05-01 00:00:00