Multiple orientations in a physiological complex: the pyruvate-ferredoxin oxidoreductase-ferredoxin system.

Abstract:

:Ferredoxin I from Desulfovibrio africanus (Da FdI) is a small acidic [4Fe-4S] cluster protein that exchanges electrons with pyruvate-ferredoxin oxidoreductase (PFOR), a key enzyme in the energy metabolism of anaerobes. The thermodynamic properties and the electron transfer between PFOR and either native or mutated FdI have been investigated by microcalorimetry and steady-state kinetics, respectively. The association constant of the PFOR-FdI complex is 3.85 x 10(5) M(-1), and the binding affinity has been found to be highly sensitive to ionic strength, suggesting the involvement of electrostatic forces in formation of the complex. Surprisingly, the punctual or combined neutralizations of carboxylate residues surrounding the [4Fe-4S] cluster slightly affect the PFOR-FdI interaction. Furthermore, hydrophobic residues around the cluster do not seem to be crucial for the PFOR-FdI system activity; however, some of them play an important role in the stability of the FeS cluster. NMR restrained docking associated with site-directed mutagenesis studies suggested the presence of various interacting sites on Da FdI. The modification of additional acidic residues at the interacting interface, generating a FdI pentamutant, evidenced at least two distinct FdI binding sites facing the distal [4Fe-4S] cluster of the PFOR. We also used a set of various small acidic partners to investigate the specificity of PFOR toward redox partners. The remarkable flexibility of the PFOR-FdI system supports the idea that the specificity of the physiological complex has probably been "sacrificed" to improve the turnover rate and thus the efficiency of bacterial electron transfer.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Pieulle L,Nouailler M,Morelli X,Cavazza C,Gallice P,Blanchet S,Bianco P,Guerlesquin F,Hatchikian EC

doi

10.1021/bi0485878

subject

Has Abstract

pub_date

2004-12-14 00:00:00

pages

15480-93

issue

49

eissn

0006-2960

issn

1520-4995

journal_volume

43

pub_type

杂志文章
  • The thermodynamic and structural differences among the catalytically active complexes of phosphoglucomutase: metal ion effects.

    abstract::When the identity of the metal ion activator, M, is changed within the series, Zn2+, Co2+, Mg2+, Ni2+, Mn2+, and Cd2+, the equilibrium distribution among the central complexes in the phosphoglucomutase system is markedly altered. (The central complexes are Ep-M-Glc-6-P, ED-M-Glc-1,6-P2, and Ep-M-Glc-1-P, where Ep and ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00663a016

    authors: Ray WJ Jr,Long JW

    更新日期:1976-09-07 00:00:00

  • Conformational changes and subunit communication in tryptophan synthase: effect of substrates and substrate analogs.

    abstract::The transmission of regulatory signals between the alpha- and beta-subunits of the tryptophan synthase alpha 2 beta 2 complex from Salmonella typhimurium has been investigated by monitoring the luminescence properties of the enzyme in the presence and in the absence of the alpha-subunit ligand DL-alpha-glycerol 3-phos...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00148a014

    authors: Strambini GB,Cioni P,Peracchi A,Mozzarelli A

    更新日期:1992-08-25 00:00:00

  • Calorimetric study of the interaction of lysozyme with aqueous 1-propanol.

    abstract::The enthalpies of transfer of hen egg white lysozyme from water to aqueous solutions of 1-propanol were determined by isothermal flow calorimetry at 10, 17, 25, and 40 degrees C in 0.04 M, pH 2 glycine buffer. Alcohol concentrations up to 3.4 M were employed. Four regions in the dependence of the enthalpy of transfer ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00514a016

    authors: Sturtevant JM,Velicelebi G

    更新日期:1981-05-26 00:00:00

  • Evidence that highly conserved residues of transmembrane segment 6 of Escherichia coli MntH are important for transport activity.

    abstract::Nramp (natural resistance-associated macrophage protein) family members have been characterized in mammals, yeast, and bacteria as divalent metal ion/H(+) symporters. In previous work, a bioinformatic approach was used for the identification of residues that are conserved within the Nramp family [Haemig, H. A., and Br...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi100320y

    authors: Haemig HA,Moen PJ,Brooker RJ

    更新日期:2010-06-08 00:00:00

  • 23,24,25-Trihydroxyvitamin D3, 24,25,26-trihydroxyvitamin D3, 24-keto-25-hydroxyvitamin D3, and 23-dehydro-25-hydroxyvitamin D3: new in vivo metabolites of vitamin D3.

    abstract::Four new in vivo metabolites of vitamin D3 were isolated from the blood plasma of chicks given large doses of vitamin D3. The metabolites were isolated by methanol-chloroform extraction and a series of chromatographic procedures. By use of mass spectrometry, ultraviolet absorption spectrophotometry, and specific chemi...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00529a010

    authors: Wichmann JK,Schnoes HK,DeLuca HF

    更新日期:1981-12-22 00:00:00

  • Ligand-dependent aggregation and cooperativity: a critique.

    abstract::Ligand-dependent site-site (or subunit-subunit) interactions provide the basis for explaining cooperativity in chemical reactions. Even in the simplest possible nonaggregating system, interpretation of the interactions in terms of structural details requires an explicit assumption (or model) for the binding of the lig...

    journal_title:Biochemistry

    pub_type: 杂志文章,评审

    doi:10.1021/bi00106a004

    authors: Saroff HA

    更新日期:1991-10-22 00:00:00

  • Interfacial and lipid transfer properties of human phospholipid transfer protein: implications for the transfer mechanism of phospholipids.

    abstract::In circulation the phospholipid transfer protein (PLTP) facilitates the transfer of phospholipid-rich surface components from postlipolytic chylomicrons and very low density lipoproteins (VLDL) to HDL and thereby regulates plasma HDL levels. To study the molecular mechanisms involved in PLTP-mediated lipid transfer, w...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0621866

    authors: Setälä NL,Holopainen JM,Metso J,Wiedmer SK,Yohannes G,Kinnunen PK,Ehnholm C,Jauhiainen M

    更新日期:2007-02-06 00:00:00

  • The membrane lipid environment modulates drug interactions with the P-glycoprotein multidrug transporter.

    abstract::The P-glycoprotein multidrug transporter functions as an ATP-driven efflux pump for a large number of structurally unrelated hydrophobic compounds. Substrates are believed to gain access to the transporter after partitioning into the membrane, rather than from the extracellular aqueous phase. The binding of drug subst...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi990064q

    authors: Romsicki Y,Sharom FJ

    更新日期:1999-05-25 00:00:00

  • Three-dimensional structure of the apo form of the N-terminal EGF-like module of blood coagulation factor X as determined by NMR spectroscopy and simulated folding.

    abstract::The three-dimensional structure of a 42-residue fragment containing the N-terminal EGF-like module of blood coagulation factor X was determined by means of 2D NMR spectroscopy and computer simulation. The spectroscopic data consisted of 370 NOE distances and 27 dihedral angle constraints. These were used to generate p...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00141a004

    authors: Ullner M,Selander M,Persson E,Stenflo J,Drakenberg T,Teleman O

    更新日期:1992-07-07 00:00:00

  • The carboxyl-terminal region of factor IX is essential for its secretion.

    abstract::The carboxyl-terminal region of factor IX (residues 403-415) contains several natural mutations which result in mild to severe forms of hemophilia B. A battery of factor IX minigene expression vectors carrying various mutations in the C-terminal region were constructed and studied by transient expression assay using H...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi962002v

    authors: Kurachi S,Pantazatos DP,Kurachi K

    更新日期:1997-04-08 00:00:00

  • Protonation state of Glu142 differs in the green- and blue-absorbing variants of proteorhodopsin.

    abstract::Proteorhodopsins are a recently discovered class of microbial rhodopsins, ubiquitous in marine bacteria. Over 4000 variants have thus far been discovered, distributed throughout the oceans of the world. Most variants fall into one of two major groups, green- or blue-absorbing proteorhodopsin (GPR and BPR, respectively...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi7018964

    authors: Kralj JM,Bergo VB,Amsden JJ,Spudich EN,Spudich JL,Rothschild KJ

    更新日期:2008-03-18 00:00:00

  • Another role for CO with nitrogenase? CO stimulates hydrogen evolution catalyzed by variant Azotobacter vinelandii Mo-nitrogenases.

    abstract::A likely entry/exit path for nitrogenase substrates, products, and/or protons involves residues α277(Arg), α192(Ser), and α356(Gly), all of which are highly conserved among MoFe proteins from different organisms. The α192(Ser) and α277(Arg) residues form part of a hydrogen-bonded network that also involves α195(His), ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi500546k

    authors: Fisher K,Hare ND,Newton WE

    更新日期:2014-10-07 00:00:00

  • Thermodynamic studies of the core histones: stability of the octamer subunits is not altered by removal of their terminal domains.

    abstract::We have investigated the role of the labile terminal domains of the core histones on the stability of the subunits of the protein core of the nucleosome by studying the thermodynamic behavior of the products of limited trypsin digestion of these subunits. The thermal stabilities of the truncated H2A-H2B dimer and the ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0110140

    authors: Karantza V,Freire E,Moudrianakis EN

    更新日期:2001-10-30 00:00:00

  • A remote substrate docking mechanism for the tec family tyrosine kinases.

    abstract::During T cell signaling, Itk selectively phosphorylates a tyrosine within its own SH3 domain and a tyrosine within PLCgamma1. We find that the remote SH2 domain in each of these substrates is required to achieve efficient tyrosine phosphorylation by Itk and extend this observation to two other Tec family kinases, Btk ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi700127c

    authors: Joseph RE,Min L,Xu R,Musselman ED,Andreotti AH

    更新日期:2007-05-08 00:00:00

  • Redesign of cosubstrate specificity and identification of important residues for substrate binding to hChAT.

    abstract::In eukaryotes, choline acetyltransferase (ChAT) catalyzes the reversible formation of the neurotransmitter acetylcholine from choline and acetyl-CoA. ChAT belongs to a family of CoA-dependent enzymes that also includes the carnitine acyltransferases CrAT, CrOT, and CPTs. In contrast to CrOT and CPTs that are very acti...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi1007996

    authors: Green KD,Porter VR,Zhang Y,Garneau-Tsodikova S

    更新日期:2010-07-27 00:00:00

  • Purification of botrocetin from Bothrops jararaca venom. Analysis of the botrocetin-mediated interaction between von Willebrand factor and the human platelet membrane glycoprotein Ib-IX complex.

    abstract::Interaction of von Willebrand factor (vWF) with its platelet receptor only occurs in vitro in the presence of a modulator such as ristocetin. We have recently confirmed that the human platelet membrane glycoprotein (GP) Ib-IX complex is the receptor involved in the ristocetin-dependent binding of vWF by reconstitution...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00447a009

    authors: Andrews RK,Booth WJ,Gorman JJ,Castaldi PA,Berndt MC

    更新日期:1989-10-17 00:00:00

  • Cyclopiazonic acid biosynthesis in Aspergillus sp.: characterization of a reductase-like R* domain in cyclopiazonate synthetase that forms and releases cyclo-acetoacetyl-L-tryptophan.

    abstract::The fungal neurotoxin alpha-cyclopiazonic acid (CPA), a nanomolar inhibitor of Ca2+-ATPase, has a pentacyclic indole tetramic acid scaffold that arises from one molecule of tryptophan, acetyl-CoA, malonyl-CoA, and dimethylallyl pyrophosphate by consecutive action of three enzymes, CpaS, CpaD, and CpaO. CpaS is a hybri...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi901123r

    authors: Liu X,Walsh CT

    更新日期:2009-09-15 00:00:00

  • Effects of Parkinson's disease-linked mutations on the structure of lipid-associated alpha-synuclein.

    abstract::Alpha-synuclein (alphaS) is a lipid-binding synaptic protein of unknown function that is found in an aggregated amyloid fibril form in the intraneuronal Lewy body deposits that are a defining characteristic of Parkinson's disease (PD). Although intrinsically unstructured when free in solution, alphaS adopts a highly h...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi036135+

    authors: Bussell R Jr,Eliezer D

    更新日期:2004-04-27 00:00:00

  • Mutagenic events in Escherichia coli and mammalian cells generated in response to acetylaminofluorene-derived DNA adducts positioned in the Nar I restriction enzyme site.

    abstract::Comparative mutagenesis studies of N-(2'-deoxyguanosin-8-yl)-2-acetylaminofluorene (dG-AAF) and N-(2'-deoxyguanosin-8-yl)-2-aminofluorene (dG-AF) adducts positioned in the Nar I restriction enzyme site were performed using Escherichia coli (E. coli) and simian kidney (COS-7) cells. Oligodeoxynucleotides ((5)(')TCCTCG(...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0202878

    authors: Tan X,Suzuki N,Grollman AP,Shibutani S

    更新日期:2002-12-03 00:00:00

  • Differential effects on energy transduction processes by fluorescamine derivatives in rat liver mitochondria.

    abstract::Intact rat liver mitochondria were treated with compounds derived from the reaction of fluorescamine with various types of primary amines, including the mycosamine-containing antibiotics amphotericin B and nystatin. The effect of varying amounts of these compounds on ATPase-linked inorganic phosphate (Pi) formation on...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00550a031

    authors: Ramirez F,Shiuan D,Tu SI,Marecek JF

    更新日期:1980-04-29 00:00:00

  • Photochemical cleavage of DNA by nitrobenzamides linked to 9-aminoacridine.

    abstract::Nitrobenzamido ligands linked to the DNA intercalator 9-aminoacridine via poly(methylene) chains induce single-strand nicks in DNA upon irradiation with long-wavelength ultraviolet light (lambda greater than or equal to 300 nm). Optimal photocleavage activity was found for the reagent 9-[[6-(4-nitrobenzamido)hexyl]ami...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00417a021

    authors: Nielsen PE,Jeppesen C,Egholm M,Buchardt O

    更新日期:1988-08-23 00:00:00

  • Crystal structure of homoserine transacetylase from Haemophilus influenzae reveals a new family of alpha/beta-hydrolases.

    abstract::Homoserine transacetylase catalyzes one of the required steps in the biosynthesis of methionine in fungi and several bacteria. We have determined the crystal structure of homoserine transacetylase from Haemophilus influenzae to a resolution of 1.65 A. The structure identifies this enzyme to be a member of the alpha/be...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi051951y

    authors: Mirza IA,Nazi I,Korczynska M,Wright GD,Berghuis AM

    更新日期:2005-12-06 00:00:00

  • Kinetic and structural characterization of reversibly inactivated beta-lactamase.

    abstract::The reversible inhibition of beta-lactamase I from Bacillus cereus by cloxacillin, methicillin, and nafcillin has been systematically investigated. For these substrates the enzymatic reaction involves partitioning of the substrate between turnover and inhibition. Typically, concentrations of several hundred millimolar...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00388a011

    authors: Fink AL,Behner KM,Tan AK

    更新日期:1987-07-14 00:00:00

  • Synthetic Riboswitches: From Plug and Pray toward Plug and Play.

    abstract::In synthetic biology, metabolic engineering, and gene therapy, there is a strong demand for orthogonal or externally controlled regulation of gene expression. Here, RNA-based regulatory devices represent a promising emerging alternative to proteins, allowing a fast and direct control of gene expression, as no synthesi...

    journal_title:Biochemistry

    pub_type: 杂志文章,评审

    doi:10.1021/acs.biochem.6b01218

    authors: Etzel M,Mörl M

    更新日期:2017-03-07 00:00:00

  • Intersubunit interaction between amino- and carboxyl-terminal cysteine residues in tetrameric shaker K+ channels.

    abstract::Shaker potassium (K+) channels normally lack intrasubunit and intersubunit disulfide bonds. However, disulfide bonds are formed between Shaker subunits in intact cells exposed to oxidizing conditions. Upon electrophoresis under nonreducing conditions, intersubunit disulfide bond formation was detected by the presence ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi961083s

    authors: Schulteis CT,Nagaya N,Papazian DM

    更新日期:1996-09-17 00:00:00

  • Environmental influences on the in vivo level of intramolecular triplex DNA in Escherichia coli.

    abstract::We describe an assay for detecting intramolecular triple-stranded DNA in living cells. The assay involves quantitative analysis of the differential photobinding of 4,5',8-trimethylpsoralen to 5'TA and 5'AT dinucleotides in a region of plasmid DNA containing the triplex-forming sequence (GA)7TA(GA)7. Psoralen photobind...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00075a013

    authors: Ussery DW,Sinden RR

    更新日期:1993-06-22 00:00:00

  • Inhibition of rabbit globin mRNA translation by sequence-specific oligodeoxyribonucleotides.

    abstract::Oligodeoxyribonucleotides 8-12 nucleotides in length whose sequences are complementary to the 5' end, the initiation codon regions, or the coding regions of rabbit globin mRNA were tested for their ability to inhibit translation in a rabbit reticulocyte lysate and in a wheat germ extract. The oligomers interact specif...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00343a015

    authors: Blake KR,Murakami A,Miller PS

    更新日期:1985-10-22 00:00:00

  • Quantitative understanding of the energy transfer between fluorescent proteins connected via flexible peptide linkers.

    abstract::The fusion of different protein domains via peptide linkers is a powerful, modular approach to obtain proteins with new functions. A detailed understanding of the conformational behavior of peptide linkers is important for applications such as fluorescence resonance energy transfer (FRET)-based sensor proteins and mul...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi061288t

    authors: Evers TH,van Dongen EM,Faesen AC,Meijer EW,Merkx M

    更新日期:2006-11-07 00:00:00

  • Effects of guanidine hydrochloride on the proton inventory of proteins: implications on interpretations of protein stability.

    abstract::The DeltaG degrees (N)(-)(D) value obtained from extrapolation to zero denaturant concentration by the linear extrapolation method (LEM) is commonly interpreted to represent the Gibbs energy difference between native (N) and denatured (D) ensembles at the limit of zero denaturant concentration. For DeltaG degrees (N)(...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi001071d

    authors: Bolen DW,Yang M

    更新日期:2000-12-12 00:00:00

  • Calcium binding and homoassociation of E-cadherin domains.

    abstract::Cadherins are single pass transmembrane glycoproteins which mediate calcium dependent cell-cell adhesion by homophilic interactions. To reveal the molecular details of calcium binding and homoassociation, we recombinantly expressed in Escherichia coli a domain pair consisting of the first two domains of E-cadherin (EC...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9705624

    authors: Koch AW,Pokutta S,Lustig A,Engel J

    更新日期:1997-06-24 00:00:00