Dynamic conformations compared for IgE and IgG1 in solution and bound to receptors.

Abstract:

:Dynamic conformations of two distinct immunoglobulin (Ig) isotypes, murine IgE and human IgG1, were examined with fluorescence resonance energy transfer measurements. The IgE mutant epsilon/C gamma 3* and the IgG1 mutant gamma/C gamma 3* each bind [5-(dimethylamino)naphthalen-1-yl]sulfonyl (DNS) in two identical antigen binding sites at the amino (N)-terminal ends of the Ig in the Fab segments. Eosin-DNS bound in these Fab sites served as the acceptor probe in these studies. Both Ig have a carboxy (C)-terminal domain (C gamma 3*) which contains genetically introduced cysteine residues. Modification of these cysteine sulfhydryls with fluorescein maleimide provided donor probes near the C-terminal ends of the Ig in the Fc segment. Energy transfer between the C-terminal and N-terminal ends was compared for these two Ig in solution and when they were found to their respective high-affinity receptors on plasma membranes: IgE-Fc epsilon RI on RBL cell membranes and IgG1-Fc gamma RI on U937 cell membranes. Previous energy-transfer measurements with these probes yielded an average end-to-end distance of 71 A for IgE in solution and 69 A for IgE bound to Fc epsilon RI, indicating that in both situations IgE is bent such that the axes of the Fab segments and the axis of the Fc segment do not form a planar Y-shape [Zheng, Shopes, Holowka, & Baird (1991) Biochemistry 30, 9125]. In the current study we found the average end-to-end distance for IgG1 in solution is 75 A and greater than or equal to 85 A for IgG1 bound to Fc gamma RI, suggesting an average bend conformation for IgG1 as well. The contributions of segmental flexibility to the average distances were assessed directly by measuring the efficiency of energy transfer as a function of variations in donor quantum yield caused by a collisional quencher and using these data to extract a Gaussian distribution of end-to-end distances. The distribution average (rho) and half-width (hw) were determined to be as follows: rho = 75 A, hw = 24 A for IgE in solution; rho = 71 A, hw = 12 A for IgE bound to Fc epsilon RI; and rho = 100 A, hw = 88 A for IgG in solution.(ABSTRACT TRUNCATED AT 400 WORDS)

journal_name

Biochemistry

journal_title

Biochemistry

authors

Zheng Y,Shopes B,Holowka D,Baird B

doi

10.1021/bi00148a004

subject

Has Abstract

pub_date

1992-08-25 00:00:00

pages

7446-56

issue

33

eissn

0006-2960

issn

1520-4995

journal_volume

31

pub_type

杂志文章
  • Structural comparison of acyl carrier protein in acylated and sulfhydryl forms by two-dimensional 1H NMR spectroscopy.

    abstract::Sequence-specific assignments of 1H NMR resonances are obtained for the backbone protons of Escherichia coli acyl carrier protein, acylated with an eight-carbon chain covalently attached to the prosthetic group thiol (octanoyl-ACP). Comparison of 1H-1H sequential connectivities in the NOESY spectra of octanoyl-ACP and...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00386a037

    authors: Jones PJ,Holak TA,Prestegard JH

    更新日期:1987-06-16 00:00:00

  • Active site directed irreversible inactivation of brewers' yeast pyruvate decarboxylase by the conjugated substrate analogue (E)-4-(4-chlorophenyl)-2-oxo-3-butenoic acid: development of a suicide substrate.

    abstract::(E)-4-(4-Chlorophenyl)-2-oxo-3-butenoic acid (CPB) was found to irreversibly inactivate brewers' yeast pyruvate decarboxylase (PDC, EC 4.1.1.1) in a biphasic, sigmoidal manner, as is found for the kinetic behavior of substrate. An expression was derived for two-site irreversible inhibition of allosteric enzymes, and t...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00285a003

    authors: Kuo DJ,Jordan F

    更新日期:1983-08-02 00:00:00

  • Kinetic mechanism of Escherichia coli asparagine synthetase B.

    abstract::Escherichia coli asparagine synthetase B (AS-B) catalyzes the synthesis of asparagine from aspartate, glutamine, and ATP. A combination of kinetic, isotopic-labeling, and stoichiometry studies have been performed to define the nature of nitrogen transfer mediated by AS-B. The results of initial rate studies were consi...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi981058h

    authors: Boehlein SK,Stewart JD,Walworth ES,Thirumoorthy R,Richards NG,Schuster SM

    更新日期:1998-09-22 00:00:00

  • A mechanism for reducing entropic cost of induced fit in protein--RNA recognition.

    abstract::Induced fit has been postulated to be an important component of ligand interactions with proteins, including protein-DNA interactions. We imagined that the entropic cost of induced fit might be highly dependent on the local protein sequence context around critical contact residues. To investigate this question, we ana...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi960256a

    authors: Ribas de Pouplana L,Auld DS,Kim S,Schimmel P

    更新日期:1996-06-25 00:00:00

  • Structure of two subfractions of normal porcine (Sus domesticus) serum low-density lipoproteins. X-ray small-angle scattering studies.

    abstract::Two subfractions of low-density lipoproteins (LDL) were isolated from normal pig (Sus domesticus) serum by a combined method including precipitation, ultracentrifugation, and gel chromatography. The fractions recovered from the buoyant density ranges 1.020-1.050 and 1.050-1.090 g/mL, denoted as LDL1 and LDL2, respecti...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00514a038

    authors: Jürgens G,Knipping GM,Zipper P,Kayushina R,Degovics G,Laggner P

    更新日期:1981-05-26 00:00:00

  • Relationship of the oxidation state of the iron-sulfur cluster of aconitase to activity and substrate binding.

    abstract::It is known that aconitase from mammalian mitochondria is only partially active as isolated but may be activated by incubation with iron, ascorbate, and a thiol, or with dithionite. It has been suggested that the added Fe in the activation mixture is essential for activation and that it is incorporated in the enzyme [...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00529a023

    authors: Ramsay RR,Dreyer JL,Schloss JV,Jackson RH,Coles CJ,Beinert H,Cleland WW,Singer TP

    更新日期:1981-12-22 00:00:00

  • Detailed structural characterization of unbound protein phosphatase 1 inhibitors.

    abstract::Protein phosphatase 1 (PP1) is an essential and ubiquitous serine/threonine protein phosphatase that is regulated by more than 100 known inhibitor and targeting proteins. It is currently unclear how protein inhibitors distinctly and specifically regulate PP1 to enable rapid responses to cellular alterations. We demons...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi801308y

    authors: Dancheck B,Nairn AC,Peti W

    更新日期:2008-11-25 00:00:00

  • Determination of the extent of DNA bending by an adenine-thymine tract.

    abstract::We determined the magnitude of the bend induced in DNA by an adenine-thymine tract by measuring the rate of cyclization of DNA oligonucleotides containing phased A tracts. A series of linear multimers with 2-bp single-stranded ends, in which the (A.T)6 tracts are separated by CG2-3C sequences and are positioned 10 and...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00469a027

    authors: Koo HS,Drak J,Rice JA,Crothers DM

    更新日期:1990-05-01 00:00:00

  • Supercoil-accelerated DNA threading intercalation.

    abstract::The effect of DNA supercoiling on a sterically very demanding threading intercalation process is investigated here. We find that the threading rate of a dimeric ruthenium complex into a negatively supercoiled plasmid at low binding density is 2 orders of magnitude higher than into the cleaved linear form. Further satu...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi802336p

    authors: Nordell P,Jansson ET,Lincoln P

    更新日期:2009-02-24 00:00:00

  • The vinblastine binding site adopts high- and low-affinity conformations during a transport cycle of P-glycoprotein.

    abstract::Conceptually one may envisage that substrate binding sites on the ABC transporter P-gp cycle between high- and low-affinity conformations in response to signals arising from nucleotide hydrolysis to effect active transport. A radioligand binding assay was used to characterize the interaction of [3H]vinblastine with P-...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi011211z

    authors: Martin C,Higgins CF,Callaghan R

    更新日期:2001-12-25 00:00:00

  • Location of sites in human lipocortin I that are phosphorylated by protein tyrosine kinases and protein kinases A and C.

    abstract::Lipocortin I is a 39-kilodalton membrane-associated protein that in A431 cells is phosphorylated on tyrosine in response to epidermal growth factor (EGF). We have used recombinant human lipocortin I as a substrate for several protein kinases and identified phosphorylated residues by a combination of peptide mapping an...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00410a024

    authors: Varticovski L,Chahwala SB,Whitman M,Cantley L,Schindler D,Chow EP,Sinclair LK,Pepinsky RB

    更新日期:1988-05-17 00:00:00

  • The CXC motif: a functional mimic of protein disulfide isomerase.

    abstract::Protein disulfide isomerase (PDI) utilizes the active site sequence Cys-Gly-His-Cys (CGHC; E degrees ' = -180 mV) to effect thiol-disulfide interchange during oxidative protein folding. Here, the Cys-Gly-Cys-NH(2) (CGC) peptide is shown to have a disulfide reduction potential (E degrees ' = -167 mV) that is close to t...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi026993q

    authors: Woycechowsky KJ,Raines RT

    更新日期:2003-05-13 00:00:00

  • Selection and characterization of a new class of peptide exosite inhibitors of coagulation factor VIIa.

    abstract::A new series of peptide inhibitors of human Factor VIIa (FVIIa) has been identified and affinity matured from naive and partially randomized peptide phage libraries selected against the immobilized tissue factor x Factor VIIa (TF x FVIIa) complex. These "A-series" peptides contain a single disulfide bond and a 13-resi...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi010591l

    authors: Dennis MS,Roberge M,Quan C,Lazarus RA

    更新日期:2001-08-14 00:00:00

  • Peptides inducing short-lived antibody responses against Plasmodium falciparum malaria have shorter structures and are read in a different MHC II functional register.

    abstract::The search for a rational method of developing an antimalarial vaccine (malaria caused by Plasmodium falciparum) consists of blocking receptor-ligand interaction. Conserved peptides derived from proteins involved in invasion and having strong red blood cell binding ability have thus been identified; immunization studi...

    journal_title:Biochemistry

    pub_type: 历史文章,杂志文章

    doi:10.1021/bi050214z

    authors: Patarroyo ME,Alba MP,Vargas LE,Silva Y,Rosas J,Rodríguez R

    更新日期:2005-05-10 00:00:00

  • Groove- and sequence-selective alkylation of DNA by sulfonate esters tethered to lexitropsins.

    abstract::A series of sulfonate esters that are attached to a noncationic minor-groove-binding N-methylpyrrole dipeptide (Lex) related to netrospin have been synthesized. The compounds prepared differ in two respects: (1) the length [(CH2)2 vs (CH2)8] of the tether between the DNA affinity binding portion of the molecule and th...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00082a017

    authors: Zhang Y,Chen FX,Mehta P,Gold B

    更新日期:1993-08-10 00:00:00

  • Computer Simulations Reveal Substrate Specificity of Glycosidic Bond Cleavage in Native and Mutant Human Purine Nucleoside Phosphorylase.

    abstract::Purine nucleoside phosphorylase (PNP) catalyzes the reversible phosphorolysis of purine ribonucleosides and 2'-deoxyribonucleosides, yielding the purine base and (2'-deoxy)ribose 1-phosphate as products. While this enzyme has been extensively studied, several questions with respect to the catalytic mechanism have rema...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.5b01347

    authors: Isaksen GV,Hopmann KH,Åqvist J,Brandsdal BO

    更新日期:2016-04-12 00:00:00

  • 8-Azido-ATP modification of cytochrome c: retardation of its electron-transfer activity to cytochrome c oxidase.

    abstract::Horse heart cytochrome c has been modified by 8-azido-ATP and the electron-transfer activity of the modified cytochrome c's to bovine heart cytochrome c oxidase (CcO) under physiological ionic strengths has been studied by the laser flash photolysis technique with 5-deazariboflavin and EDTA as the electron donor. The ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00008a035

    authors: Lin J,Wu S,Lau WT,Chan SI

    更新日期:1995-02-28 00:00:00

  • Apocalmodulin and Ca2+ calmodulin bind to the same region on the skeletal muscle Ca2+ release channel.

    abstract::The skeletal muscle Ca2+ release channel (RYR1) is regulated by calmodulin in both its Ca2+-free (apocalmodulin) and Ca2+-bound (Ca2+ calmodulin) states. Apocalmodulin is an activator of the channel, and Ca2+ calmodulin is an inhibitor of the channel. Both apocalmodulin and Ca2+ calmodulin binding sites on RYR1 are de...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9907431

    authors: Moore CP,Rodney G,Zhang JZ,Santacruz-Toloza L,Strasburg G,Hamilton SL

    更新日期:1999-06-29 00:00:00

  • A vibrational analysis of the catalytically important C4-H bonds of NADH bound to lactate or malate dehydrogenase: ground-state effects.

    abstract::We have measured the frequency of the carbon-hydrogen stretching mode of the pro-R and pro-S C4-H bonds of NADH in solution and when bound to pig heart lactate (LDH) or mitochondrial malate (mMDH) dehydrogenases. This is achieved by specifically deuterating the C4 pro-R or pro-S hydrogens of NADH and determining the f...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00136a022

    authors: Deng H,Zheng J,Sloan D,Burgner J,Callender R

    更新日期:1992-06-02 00:00:00

  • Peptide secondary structure induced by a micellar phospholipidic interface: proton NMR conformational study of a lipopeptide.

    abstract::The conformational change of the model peptide Ac-K-G-R-G-D-G-amide induced by a phospholipidic interface was investigated by proton nuclear magnetic resonance (1H NMR). In aqueous solution, the free peptide is highly flexible and disordered, even in the presence of deuterated dodecyl-phosphocholine (DPC-d38) micelles...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00124a018

    authors: Macquaire F,Baleux F,Giaccobi E,Huynh-Dinh T,Neumann JM,Sanson A

    更新日期:1992-03-10 00:00:00

  • Contribution of exogenous substrates to acetyl coenzyme A: measurement by 13C NMR under non-steady-state conditions.

    abstract::A method is presented for the rapid determination of substrate selection in a manner that is not restricted to conditions of metabolic and isotopic steady state. Competition between several substrates can be assessed directly and continuously in a single experiment, allowing the effect of interventions to be studied. ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00481a002

    authors: Malloy CR,Thompson JR,Jeffrey FM,Sherry AD

    更新日期:1990-07-24 00:00:00

  • Redesign of the proton-pumping machinery of cytochrome c oxidase: proton pumping does not require Glu(I-286).

    abstract::One of the putative proton-transfer pathways leading from solution toward the binuclear center in many cytochrome c oxidases is the D-pathway, so-called because it starts with a highly conserved aspartate [D(I-132)] residue. Another highly conserved amino acid residue in this pathway, glutamate(I-286), has been indica...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0012641

    authors: Aagaard A,Gilderson G,Mills DA,Ferguson-Miller S,Brzezinski P

    更新日期:2000-12-26 00:00:00

  • Sugar recognition by CscB and LacY.

    abstract::The sucrose permease (CscB) and lactose permease (LacY) of Escherichia coli belong to the oligosaccharide/H(+) symporter subfamily of the major facilitator superfamily, and both catalyze sugar/H(+) symport across the cytoplasmic membrane. Thus far, there is no common substrate for the two permeases; CscB transports su...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi201592y

    authors: Sugihara J,Smirnova I,Kasho V,Kaback HR

    更新日期:2011-12-27 00:00:00

  • Thymidylate synthetase catalyzed exchange of tritiumfrom [5-3H]-2'-deoxyuridylate for protons of water.

    abstract::Thymidylate synthetase catalyzes an exchange of tritium of [5-3H]dUMP for protons of water in the absence of CH2-H4folate. The turnover number for this reaction is some 45,000-fold lower than that of dTMP formation and Km is 1.2 X 10(-5) M, similar to the dissociation constant of the enzyme-dUMP complex determined by ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00580a016

    authors: Pogolotti AL Jr,Weill C,Santi DV

    更新日期:1979-06-26 00:00:00

  • Molecular basis of the effects of chloride ion on the acid-base catalyst in the mechanism of pancreatic alpha-amylase.

    abstract::Pig pancreatic alpha-amylase (PPA), an enzyme belonging to the alpha-amylase family, is involved in the degradation of starch. Like some other members of this family, PPA requires chloride to reach maximum activity levels. To further explain the mechanism of chloride activation, a crystal of wild-type PPA soaked with ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi048201t

    authors: Qian M,Ajandouz el H,Payan F,Nahoum V

    更新日期:2005-03-08 00:00:00

  • Occurrence of 2-5A and RNA degradation in the chick oviduct during rapid estrogen withdrawal.

    abstract::Rapid withdrawal of estrogen from immature chicks, previously stimulated with the hormone, results in the inhibition of transcription of mRNAs of egg white proteins, rapid degradation of existing estrogen-induced mRNAs of egg white proteins, and decline in ribosomes and weight of the oviduct. On rapid withdrawal of es...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00409a019

    authors: Cohrs RJ,Goswami BB,Sharma OK

    更新日期:1988-05-03 00:00:00

  • Dependence of 4'-(hydroxymethyl)-4,5',8-trimethylpsoralen photoaddition on the conformation of ribonucleic acid.

    abstract::The photoaddition of 4'-(hydroxymethyl)-4,5',8-trimethylpsoralen (HMT) to different conformational states of RNA was studied. Poly(U), poly(A,U) (random copolymer), poly(A-U) (alternating copolymer), poly(A) . poly(U) (double stranded), and poly(U) . poly(A) . poly(U) (triple stranded) were reacted with HMT at differe...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00535a040

    authors: Thompson JF,Bachellerie JP,Hall K,Hearst JE

    更新日期:1982-03-16 00:00:00

  • High-resolution mapping of carcinogen binding sites on DNA.

    abstract::We have used a photochemical method to map covalent binding sites of the carcinogen benzo[a]pyrenediol epoxide (BPDE) within DNA from the transcriptional control region of the chicken adult beta-globin gene. Our preliminary low-resolution mapping has demonstrated that this region contains highly preferred BPDE binding...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00358a045

    authors: Boles TC,Hogan ME

    更新日期:1986-05-20 00:00:00

  • Impact of Mutating the Key Residues of a Bifunctional 5,10-Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase from Escherichia coli on Its Activities.

    abstract::Methylenetetrahydrofolate dehydrogenase-cyclohydrolase (FolD) catalyzes interconversion of 5,10-methylene-tetrahydrofolate and 10-formyl-tetrahydrofolate in the one-carbon metabolic pathway. In some organisms, the essential requirement of 10-formyl-tetrahydrofolate may also be fulfilled by formyltetrahydrofolate synth...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.5b00400

    authors: Sah S,Varshney U

    更新日期:2015-06-09 00:00:00

  • Structural and functional characterization of sperm whale myoglobin mutants: role of arginine (E10) in ligand stabilization.

    abstract::1H NMR and ligand-binding data were used to assess the role of residue Arg(E10) in ligand stabilization of several site-directed mutants, all carrying the His(E7) to Val substitution, obtained using a synthetic sperm whale myoglobin gene. Arg(E10) was previously found to form a hydrogen bond with the ligand in fluoro-...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00074a015

    authors: Allocatelli CT,Cutruzzolà F,Brancaccio A,Brunori M,Qin J,La Mar GN

    更新日期:1993-06-15 00:00:00