Peptides inducing short-lived antibody responses against Plasmodium falciparum malaria have shorter structures and are read in a different MHC II functional register.

Abstract:

:The search for a rational method of developing an antimalarial vaccine (malaria caused by Plasmodium falciparum) consists of blocking receptor-ligand interaction. Conserved peptides derived from proteins involved in invasion and having strong red blood cell binding ability have thus been identified; immunization studies using Aotus monkeys revealed that these peptides were neither immunogenic nor protection-inducing. Some of these peptides induced long-lasting and very high antibody titers and protection when their critical red blood cell binding residues were replaced to change their immunological properties. Others induced short-lived antibodies that were not associated with inducing protection. The three-dimensional structure of the short-lived antibody-inducing peptide was determined by (1)H NMR. Their HLA-DRbeta1* molecule binding ability was also determined to ascertain the relationship among three-dimensional structure, their ability to bind to major histocompatibility complex class II molecules (MHC II), and possible short-lived antibody production. These short-lived antibody-inducing peptides were 6.8 +/- 0.5 A shorter between those residues theoretically coming into contact with pocket 1 and pocket 9 of HLA-DRbeta1* molecules to which they bind than immunogenic and protection-inducing peptides. These more compact alpha-helical structures suggest that these short-lived antibody-inducing peptides could have a structure more similar to those of native peptides than immunogenic and protective ones. Such shortening was associated with a shift in HLA-DRbeta1* molecule binding and a consequent shift in functional register reading, mainly by alleles of the same haplotype when compared with immunogenic protection-inducing HABPs, suggesting an imperfect and different conformation of the MHC II peptide-TCR complex.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Patarroyo ME,Alba MP,Vargas LE,Silva Y,Rosas J,Rodríguez R

doi

10.1021/bi050214z

subject

Has Abstract

pub_date

2005-05-10 00:00:00

pages

6745-54

issue

18

eissn

0006-2960

issn

1520-4995

journal_volume

44

pub_type

历史文章,杂志文章
  • Folding of an unfolded protein by macromolecular crowding in vitro.

    abstract::Protein folding in vivo takes place in a highly crowded environment. The resulting excluded volume forces are thought to stabilize folded forms of proteins. In agreement, many in vitro studies have shown that the presence of macromolecular crowding agents increases the stability of folded proteins but often by only a ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi500222g

    authors: Adén J,Wittung-Stafshede P

    更新日期:2014-04-15 00:00:00

  • Bovine H10 histone subfractions contain an invariant sequence which matches histones H5 rather than H1.

    abstract::Histone H10 differs substantially from H1 in a 37-residue region of the primary structure that is conserved between the usual H1 histones of fish and mammals. Instead, H10 is homologous to H5 in this region. Histones H10 and H5 might be classified together in a histone category distinct from the usual H1. ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00511a035

    authors: Pehrson JR,Cole RD

    更新日期:1981-04-14 00:00:00

  • Steady-state and pre-steady-state kinetic analysis of Mycobacterium smegmatis cysteine ligase (MshC).

    abstract::Mycobacterium tuberculosis and many other members of the Actinomycetes family produce mycothiol, i.e., 1-d-myo-inosityl-2-(N-acetyl-l-cysteinyl)amido-2-deoxy-alpha-d-glucopyranoside (MSH or AcCys-GlcN-Ins), to act against oxidative and antibiotic stress. The biosynthesis of MSH is essential for cell growth and has bee...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi7011492

    authors: Fan F,Luxenburger A,Painter GF,Blanchard JS

    更新日期:2007-10-09 00:00:00

  • Distal regulation of heme binding of heme oxygenase-1 mediated by conformational fluctuations.

    abstract::Heme oxygenase-1 (HO-1) is an enzyme that catalyzes the oxidative degradation of heme. Since free heme is toxic to cells, rapid degradation of heme is important for maintaining cellular health. There have been useful mechanistic studies of the HO reaction based on crystal structures; however, how HO-1 recognizes heme ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi5009694

    authors: Harada E,Sugishima M,Harada J,Fukuyama K,Sugase K

    更新日期:2015-01-20 00:00:00

  • Identification of catalytic residues in the As(III) S-adenosylmethionine methyltransferase.

    abstract::The enzyme As(III) S-adenosylmethionine methyltransferase (EC 2.1.1.137) (ArsM or AS3MT) is found in members of every kingdom, from bacteria to humans. In these enzymes, there are three conserved cysteine residues at positions 72, 174, and 224 in the CmArsM orthologue from the thermophilic eukaryotic alga Cyanidioschy...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi201500c

    authors: Marapakala K,Qin J,Rosen BP

    更新日期:2012-02-07 00:00:00

  • A large solvent isotope effect on protein association thermodynamics.

    abstract::Solvent reorganization can contribute significantly to the energetics of protein-protein interactions. However, our knowledge of the magnitude of the energetic contribution is limited, in part, by a dearth of quantitative experimental measurements. The biotin repressor forms a homodimer as a prerequisite to DNA bindin...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi400952m

    authors: Eginton C,Beckett D

    更新日期:2013-09-24 00:00:00

  • LNA (locked nucleic acid): high-affinity targeting of complementary RNA and DNA.

    abstract::Locked nucleic acid (LNA) is a nucleic acid analogue containing one or more LNA nucleotide monomers with a bicyclic furanose unit locked in an RNA mimicking sugar conformation. LNA oligonucleotides display unprecedented hybridization affinity toward complementary single-stranded RNA and complementary single- or double...

    journal_title:Biochemistry

    pub_type: 杂志文章,评审

    doi:10.1021/bi0485732

    authors: Vester B,Wengel J

    更新日期:2004-10-26 00:00:00

  • Membrane reconstitution of high-affinity alpha 2 adrenergic agonist binding with guanine nucleotide regulatory proteins.

    abstract::Regulation of adenylate cyclase by alpha 2 adrenergic receptors requires the inhibitory guanine nucleotide binding protein Ni. A role for this protein has also been suggested in the high-affinity binding of agonists to the alpha 2 receptor. We recently reported that alkaline treatment can selectively inactivate alpha ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00386a061

    authors: Kim MH,Neubig RR

    更新日期:1987-06-16 00:00:00

  • Purification and spectroscopic characterization of photosystem II reaction center complexes isolated with or without Triton X-100.

    abstract::The pigment composition of the isolated photosystem II reaction center complex in its most stable and pure form currently is a matter of considerable debate. In this contribution, we present a new method based on a combination of gel filtration chromatography and diode array detection to analyze the composition of pho...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi960991m

    authors: Eijckelhoff C,van Roon H,Groot ML,van Grondelle R,Dekker JP

    更新日期:1996-10-01 00:00:00

  • Enzyme-monitored turnover of Escherichia coli thioredoxin reductase: insights for catalysis.

    abstract::Thioredoxin reductase from Escherichia coli is a member of the pyridine nucleotide-disulfide oxidoreductase family, and contains one FAD and one redox-active disulfide per subunit. It is known that two other well-studied members of this family, lipoamide dehydrogenase and glutathione reductase, cycle between the two e...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi952521i

    authors: Lennon BW,Williams CH Jr

    更新日期:1996-04-16 00:00:00

  • Key role of phenylalanine 20 in cytochrome c3: structure, stability, and function studies.

    abstract::Aromatic residues in c-type cytochromes might have an important function in the folding and/or electron transferring properties of the molecule. In the tetraheme cytochrome c3 (Mr 13 000) from Desulfovibrio vulgaris Hildenborough, Phe20, is located between heme 1 and heme 3 with its aromatic ring close and almost para...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi981593h

    authors: Dolla A,Arnoux P,Protasevich I,Lobachov V,Brugna M,Giudici-Orticoni MT,Haser R,Czjzek M,Makarov A,Bruschi M

    更新日期:1999-01-05 00:00:00

  • Effects of hydration on purine motion in solid DNA.

    abstract::Deuterium quadrupole echo spectra and spin-lattice relaxation rates measured at 76.8 and 38.4 MHz as a function of relative humidity are reported for calf thymus DNA deuterated at positions A8 and G8. The amplitude of base pair motion is observed to increase slightly with increasing degree of hydration (up to approxim...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00371a069

    authors: Brandes R,Vold RR,Vold RL,Kearns DR

    更新日期:1986-11-18 00:00:00

  • Cardiac troponin T forms a tetramer in vitro.

    abstract::Cardiac troponin T (cTnT) is a myofibrillar protein essential for calcium-dependent contraction. This property has led to functional studies of developmentally expressed cTnT isoforms and mutants identified in patients with hypertrophic cardiomyopathy. The release of cTnT into the serum following myocardial infarction...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi7012596

    authors: Lounes KC,Demeler B,Anderson DE,Gomes AW,Potter JD,Nassar R,Anderson PA

    更新日期:2008-02-19 00:00:00

  • Three-dimensional structure of potato carboxypeptidase inhibitor in solution. A study using nuclear magnetic resonance, distance geometry, and restrained molecular dynamics.

    abstract::The solution conformation of potato carboxypeptidase inhibitor (CPI) has been investigated by 1H NMR spectroscopy. The spectrum is assigned in a sequential manner by using two-dimensional NMR techniques to identify through-bond and through-space (less than 5 A) connectivities. A set of 309 approximate interproton dist...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00398a069

    authors: Clore GM,Gronenborn AM,Nilges M,Ryan CA

    更新日期:1987-12-01 00:00:00

  • Physical mechanism for regulation of phosphoenolpyruvate-dependent glucose transport activity in Escherichia coli.

    abstract::The activity of the phosphoenolpyruvate-dependent glucose phosphotransferase system (PTS) in Escherichia coli is coupled to the oxidation-reduction potential. It is inhibited when the redox potential is increased above -300 mV either via substrate oxidation or via direct addition of oxidizing agents. Depending on the ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00520a032

    authors: Robillard GT,Konings WN

    更新日期:1981-08-18 00:00:00

  • A Nuclear Resonance Vibrational Spectroscopic Study of Oxy Myoglobins Reconstituted with Chemically Modified Heme Cofactors: Insights into the Fe-O2 Bonding and Internal Dynamics of the Protein.

    abstract::The molecular mechanism of O2 binding to hemoglobin (Hb) and myoglobin (Mb) is a long-standing issue in the field of bioinorganic and biophysical chemistry. The nature of Fe-O2 bond in oxy Hb and Mb had been extensively investigated by resonance Raman spectroscopy, which assigned the Fe-O2 stretching bands at ∼570 cm-...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.8b00829

    authors: Ohta T,Shibata T,Kobayashi Y,Yoda Y,Ogura T,Neya S,Suzuki A,Seto M,Yamamoto Y

    更新日期:2018-12-04 00:00:00

  • Conservation of promoter melting mechanisms in divergent regions of the single-subunit RNA polymerases.

    abstract::The single-subunit RNA polymerases make up a widespread family of proteins found in phage, mitochondria, and chloroplasts. Unlike the phage RNAPs, the eukaryotic RNAPs require accessory factors to melt their promoters and diverge from the phage RNAPs in the regions where functions associated with promoter melting in t...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi300074j

    authors: Velazquez G,Guo Q,Wang L,Brieba LG,Sousa R

    更新日期:2012-05-08 00:00:00

  • Binding domain of human parathyroid hormone receptor: from conformation to function.

    abstract::A 31 amino acid fragment of the extracellular N-terminus of the human G-protein coupled receptor for parathyroid hormone (PTH1R) has been structurally characterized by NMR and molecular dynamics simulations. The fragment PTH1R[168-198] includes residues 173-189, shown by photoaffinity cross-linking to be a contact dom...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi981265h

    authors: Pellegrini M,Bisello A,Rosenblatt M,Chorev M,Mierke DF

    更新日期:1998-09-15 00:00:00

  • Identification of the heme-modified peptides from cumene hydroperoxide-inactivated cytochrome P450 3A4.

    abstract::Cumene hydroperoxide-mediated (CuOOH-mediated) inactivation of cytochromes P450 (CYPs) results in destruction of their prosthetic heme to reactive fragments that irreversibly bind to the protein. We have attempted to characterize this process structurally, using purified, 14C-heme labeled, recombinant human liver P450...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9808464

    authors: He K,Bornheim LM,Falick AM,Maltby D,Yin H,Correia MA

    更新日期:1998-12-15 00:00:00

  • Temperature-induced conformational switch in intestinal fatty acid binding protein (IFABP) revealing an alternative mode for ligand binding.

    abstract::IFABP is a small beta-barrel protein with a short helix-turn-helix motif near the N-terminus that is thought to participate in the regulation of the uptake and delivery of fatty acids. In a previous work, we detected by near UV circular dichroism a reversible conformational transition of this protein occurring between...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi020680d

    authors: Arighi CN,Rossi JP,Delfino JM

    更新日期:2003-06-24 00:00:00

  • Differential cytotoxicity of human wild type and mutant alpha-synuclein in human neuroblastoma SH-SY5Y cells in the presence of dopamine.

    abstract::Parkinson's disease (PD) involves loss of dopaminergic neurons in the substantia nigra and is characterized by intracellular inclusions, Lewy bodies, consisting primarily of aggregated alpha-synuclein. Two substitution mutations (A53T and A30P) in alpha-synuclein gene have been identified in familial early-onset PD. T...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi036114f

    authors: Moussa CE,Wersinger C,Tomita Y,Sidhu A

    更新日期:2004-05-11 00:00:00

  • The Cys319 loop modulates the transition between dehydrogenase and hydrolase conformations in inosine 5'-monophosphate dehydrogenase.

    abstract::X-ray crystal structures of enzyme-ligand complexes are widely believed to mimic states in the catalytic cycle, but this presumption has seldom been carefully scrutinized. In the case of Tritrichomonas foetus inosine 5'-monophosphate dehydrogenase (IMPDH), 10 structures of various enzyme-substrate-inhibitor complexes ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi101590c

    authors: Josephine HR,Ravichandran KR,Hedstrom L

    更新日期:2010-12-21 00:00:00

  • Monovalent cation transport: lack of structural deformation upon cation binding.

    abstract::Cations often deform the structure of regulatory proteins to affect a functional response, but for other protein functions a more passive effect is desired. For instance, it is shown here that in the conductance of Na+ by the gramicidin channel there appears to be no significant structural deformation of either the si...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi961170k

    authors: Tian F,Lee KC,Hu W,Cross TA

    更新日期:1996-09-17 00:00:00

  • Conformational dynamics and the energetics of protein--ligand interactions: role of interdomain loop in human cytochrome P450 reductase.

    abstract::A combination of mutagenesis, calorimetry, kinetics, and small-angle X-ray scattering (SAXS) has been used to study the mechanism of ligand binding energy propagation through human cytochrome P450 reductase (CPR). Remarkably, the energetics of 2',5'-ADP binding to R597 at the FAD-binding domain are affected by mutatio...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi700596s

    authors: Grunau A,Geraki K,Grossmann JG,Gutierrez A

    更新日期:2007-07-17 00:00:00

  • Molecular functions of conserved aspects of the GHMP kinase family.

    abstract::The sequences and three-dimensional structures of the galactokinase, homoserine kinase, mevalonate kinase, and phosphomevalonate kinase (GHMP) family were compared to identify highly conserved surface residues. The functions of these solvent-accessible residues were assessed by determining the effects of their substit...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi048963o

    authors: Andreassi JL 2nd,Leyh TS

    更新日期:2004-11-23 00:00:00

  • Structural Insights into the Inhibitory Mechanism of Insulin Secretagogues on the Pancreatic ATP-Sensitive Potassium Channel.

    abstract::Sulfonylureas and glinides are commonly used oral insulin secretagogues (ISs) that act on the pancreatic ATP-sensitive potassium (KATP) channel to promote insulin secretion in order to lower the blood glucose level. Physiologically, KATP channels are inhibited by intracellular ATP and activated by Mg-ADP. Therefore, t...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.9b00692

    authors: Wu JX,Ding D,Wang M,Chen L

    更新日期:2020-01-14 00:00:00

  • Targeted cleavage of polynucleotides by complementary oligonucleotides covalently linked to iron-porphyrins.

    abstract::Oligothymidylates covalently linked to iron-porphyrins were synthesized to target the nuclease activity of Fe-porphyrin to complementary polynucleotides. In the presence of oxygen and a reducing agent, oligo(dT)7 bearing the reactive group attached to the 3'-phosphate was shown to be active in the cleavage of poly(dA)...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00370a002

    authors: Le Doan T,Perrouault L,Helene C,Chassignol M,Thuong NT

    更新日期:1986-11-04 00:00:00

  • Resonance Raman spectroscopic measurements delineate the structural changes that occur during tau fibril formation.

    abstract::The aggregation of the microtubule-associated protein, tau, into amyloid fibrils is a hallmark of neurodegenerative diseases such as the tauopathies and Alzheimer's disease. Since monomeric tau is an intrinsically disordered protein and the polymeric fibrils possess an ordered cross-β core, the aggregation process is ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi500528x

    authors: Ramachandran G,Milán-Garcés EA,Udgaonkar JB,Puranik M

    更新日期:2014-10-21 00:00:00

  • Correlating structure and affinity for PEX5:PTS1 complexes.

    abstract::Many proteins that are destined to reside within the lumen of the peroxisome contain the peroxisomal targeting signal-1 (PTS1), a C-terminal tripeptide approximating the consensus sequence -Ser-Lys-Leu-COO(-). The PTS1 is recognized by the tetratricopeptide repeat (TPR) domains of PEX5, a cytosolic receptor that cycle...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi027034z

    authors: Gatto GJ Jr,Maynard EL,Guerrerio AL,Geisbrecht BV,Gould SJ,Berg JM

    更新日期:2003-02-18 00:00:00

  • Interactions of cationic ligands and proteins with small nucleic acids: analytic treatment of the large coulombic end effect on binding free energy as a function of salt concentration.

    abstract::For nonspecific binding of oligopeptides and other cationic ligands, including proteins, to nucleic acid oligomers, we develop a model capable of quantifying and predicting the salt concentration dependence of the binding free energy (deltaG(o)obs) by way of an analytic treatment of the Coulombic end effect (CEE). Lig...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0520434

    authors: Shkel IA,Ballin JD,Record MT Jr

    更新日期:2006-07-11 00:00:00