Enhancement, relaxation, and reversal of the stereoselectivity for phosphotriesterase by rational evolution of active site residues.

Abstract:

:The factors that govern the substrate reactivity and stereoselectivity of phosphotriesterase (PTE) toward organophosphotriesters containing various combinations of methyl, ethyl, isopropyl, and phenyl substituents at the phosphorus center were determined by systematic alterations in the dimensions of the active site. The wild type PTE prefers the S(P)-enantiomers over the corresponding R(P)-enantiomers by factors ranging from 10 to 90. Enlargement of the small subsite of PTE with the substitution of glycine and alanine residues for Ile-106, Phe-132, and/or Ser-308 resulted in significant improvements in k(cat)/K(a) for the R(P)-enantiomers of up to 2700-fold but had little effect on k(cat)/K(a) for the corresponding S(P)-enantiomers. The kinetic preferences for the S(P)-enantiomers were thus relaxed without sacrificing the inherent catalytic activity of the wild type enzyme. A reduction in the size of the large subsite with the mutant H257Y resulted in a reduction in k(cat)/K(a) for the S(P)-enantiomers, while the values of k(cat)/K(a) for the R(P)-enantiomers were essentially unchanged. The initial stereoselectivity observed with the wild type enzyme toward the chiral substrate library was significantly reduced with the H257Y mutant. Simultaneous alternations in the sizes of the large and small subsites resulted in the complete reversal of the chiral specificity. With this series of mutants, the R(P)-enantiomers were preferred as substrates over the corresponding S(P)-enantiomers by up to 500-fold. These results have demonstrated that the stereochemical determinants for substrate hydrolysis by PTE can be systematically altered through a rational reconstruction of the dimensions of the active site.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Chen-Goodspeed M,Sogorb MA,Wu F,Raushel FM

doi

10.1021/bi001549d

subject

Has Abstract

pub_date

2001-02-06 00:00:00

pages

1332-9

issue

5

eissn

0006-2960

issn

1520-4995

pii

bi001549d

journal_volume

40

pub_type

杂志文章
  • Analysis of the reaction of carbachol with acetylcholinesterase using thioflavin T as a coupled fluorescence reporter.

    abstract::Acetylcholinesterase (AChE) contains a narrow and deep active site gorge with two sites of ligand binding, an acylation site (or A-site) at the base of the gorge and a peripheral site (or P-site) near the gorge entrance. The P-site contributes to catalytic efficiency by transiently binding substrates on their way to t...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi8015197

    authors: Rosenberry TL,Sonoda LK,Dekat SE,Cusack B,Johnson JL

    更新日期:2008-12-09 00:00:00

  • Limited proteolysis and active-site labeling studies of soybean lipoxygenase.

    abstract::Soybean lipoxygenase 1 was studied using limited proteolysis and active-site labeling to begin the structural characterization of the enzyme in solution. The serine proteases trypsin and chymotrypsin cleaved the large monomeric protein (95 kDa) into two large polypeptides, a C-terminal fragment of about 30 kDa and an ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00148a034

    authors: Ramachandran S,Carroll RT,Dunham WR,Funk MO Jr

    更新日期:1992-08-25 00:00:00

  • Membrane-induced conformational change of alpha1-acid glycoprotein characterized by vacuum-ultraviolet circular dichroism spectroscopy.

    abstract::The tertiary structure of alpha1-acid glycoprotein (AGP) remains unresolved despite its novel function because AGP is a hard target in X-ray and NMR analyses. To elucidate the membrane-induced conformational change of AGP, the vacuum-ultraviolet circular dichroism (VUVCD) spectra of AGP and its constituent sugars were...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi901184r

    authors: Matsuo K,Namatame H,Taniguchi M,Gekko K

    更新日期:2009-09-29 00:00:00

  • Crystal structures of the inactive D30N mutant of feline immunodeficiency virus protease complexed with a substrate and an inhibitor.

    abstract::Crystal structures of complexes of a D30N mutant of feline immunodeficiency virus protease (FIV PR) complexed with a statine-based inhibitor (LP-149), as well as with a substrate based on a modification of this inhibitor (LP-149S), have been solved and refined at resolutions of 2.0 and 1.85 A, respectively. Both the i...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9707436

    authors: Laco GS,Schalk-Hihi C,Lubkowski J,Morris G,Zdanov A,Olson A,Elder JH,Wlodawer A,Gustchina A

    更新日期:1997-09-02 00:00:00

  • Overexpression, purification, and mechanistic study of UDP-N-acetylenolpyruvylglucosamine reductase.

    abstract::The recently isolated Escherichia coli murB gene (Pucci et al., 1992) has been cloned into an expression vector and the encoded UDP-N-acetylenolpyruvylglucosamine reductase (EC 1.1.1.158) was overproduced to about 10% of soluble cell protein. The encoded 38-kDa protein has been purified to near homogeneity. It was fou...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00059a019

    authors: Benson TE,Marquardt JL,Marquardt AC,Etzkorn FA,Walsh CT

    更新日期:1993-03-02 00:00:00

  • Isolation and sequence analysis of three cloned cDNAs for rabbit liver proteins that are related to rabbit cytochrome P-450 (form 2), the major phenobarbital-inducible form.

    abstract::We have isolated from rabbit liver three cDNA clones of 1400-1800 base pairs that hybridize selectively to RNA from animals treated with phenobarbital. The nucleotide sequences of the cDNAs have been determined. In the protein coding region the nucleotide sequences of two of the cDNAs are 88% homologous, and the third...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00297a005

    authors: Leighton JK,DeBrunner-Vossbrinck BA,Kemper B

    更新日期:1984-01-17 00:00:00

  • Characterization of the macrolide P-450 hydroxylase from Streptomyces venezuelae which converts narbomycin to picromycin.

    abstract::The post-polyketide synthase (PKS) biosynthetic tailoring of macrolide antibiotics usually involves one or more oxidation reactions catalyzed by cytochrome P450 monooxygenases. As the specificities of members from this class of enzymes vary significantly among PKS gene clusters, the identification and study of new mac...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi981699c

    authors: Betlach MC,Kealey JT,Ashley GW,McDaniel R

    更新日期:1998-10-20 00:00:00

  • Evidence for the two phosphate binding sites of an analogue of the thioacyl intermediate for the Trypanosoma cruzi glyceraldehyde-3-phosphate dehydrogenase-catalyzed reaction, from its crystal structure.

    abstract::Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) catalyzes the reversible oxidative phosphorylation of d-glyceraldehyde 3-phosphate (GAP) into d-glycerate 1,3-bisphosphate (1,3-diPG) in the presence of NAD(+) and inorganic phosphate (P(i)). Within the active site, two anion-binding sites were ascribed to the binding o...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0206107

    authors: Castilho MS,Pavão F,Oliva G,Ladame S,Willson M,Périé J

    更新日期:2003-06-17 00:00:00

  • Sensitivity of flavin fluorescence dynamics in neuronal nitric oxide synthase to cofactor-induced conformational changes and dimerization.

    abstract::The fluorescence intensity of the two flavin prosthetic groups, FMN and FAD, in neuronal nitric oxide synthase (nNOS) was found to decay highly nonexponentially, being best described by four fluorescence lifetimes. This excited state heterogeneity is the result of multiple flavin quenching sites which are due to sever...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi981138l

    authors: Brunner K,Tortschanoff A,Hemmens B,Andrew PJ,Mayer B,Kungl AJ

    更新日期:1998-12-15 00:00:00

  • Equilibrium analysis of ethidium binding to DNA containing base mismatches and branches.

    abstract::In the processes of DNA replication, recombination, and repair, duplex DNA can transiently form branched structures, such as Holliday junctions, as well as base pair mismatches and bulges. These stages have altered ligand and protein binding properties from normal double helical DNA. A variety of ligands have been rep...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00248a025

    authors: Hernández LI,Zhong M,Courtney SH,Marky LA,Kallenbach NR

    更新日期:1994-11-08 00:00:00

  • Selective incorporation of nitrile-based infrared probes into proteins via cysteine alkylation.

    abstract::The nitrile stretching vibration is increasingly used as a sensitive infrared probe of local protein environments. However, site-specific incorporation of a nitrile moiety into proteins is difficult. Here we show that various aromatic nitriles can be easily incorporated into peptides and proteins via either thiol alky...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi101711a

    authors: Jo H,Culik RM,Korendovych IV,Degrado WF,Gai F

    更新日期:2010-12-14 00:00:00

  • Relaxation kinetics of glutamate dehydrogenase self-association by pressure perturbation.

    abstract::The kinetics of self-association for beef liver glutamate dehydrogenase (EC 1.4.1.3) have been measured by using pressure perturbation in both the time domain and the frequency domain by monitoring scattered light intensity. The kinetic behavior is entirely consistent with the random self-association model proposed by...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00579a007

    authors: Halvorson HR

    更新日期:1979-06-12 00:00:00

  • Demonstration of the GC-rich common arm in yeast ribosomal 5.8S RNA via 500-MHz proton nuclear magnetic resonance and Overhauser enhancements.

    abstract::In this paper we report the first 1H NMR study of the base-paired secondary structure of yeast 5.8S RNA. On the basis of a combination of homonuclear Overhauser enhancements and temperature dependence of the proton 500-MHz NMR spectrum, we are able to identify and assign eight of the nine base pairs in the most therma...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00373a018

    authors: Lee KM,Marshall AG

    更新日期:1986-12-16 00:00:00

  • Characterization of mouse ZP3-derived glycopeptide, gp55, that exhibits sperm receptor and acrosome reaction-inducing activity in vitro.

    abstract::During fertilization, free-swimming mouse sperm bind to mZP3 (approximately 83 000 Mr), one of three zona pellucida glycoproteins, and once bound undergo the acrosome reaction, a type of cellular exocytosis [Wassarman, P. M., & Litscher, E. S. (1995) Curr. Top. Dev. Biol. 30, 1-19]. Sperm recognize and bind to specifi...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi952722m

    authors: Litscher ES,Wassarman PM

    更新日期:1996-04-02 00:00:00

  • Active site specific cadmium(II)-substituted horse liver alcohol dehydrogenase: crystal structures of the free enzyme, its binary complex with NADH, and the ternary complex with NADH and bound p-bromobenzyl alcohol.

    abstract::Three crystal structures have been determined of active site specific substituted Cd(II) horse liver alcohol dehydrogenase and its complexes. Intensities were collected for the free, orthorhombic enzyme to 2.4-A resolution and for a triclinic binary complex with NADH to 2.7-A resolution. A ternary complex was crystall...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00346a070

    authors: Schneider G,Cedergren-Zeppezauer E,Knight S,Eklund H,Zeppezauer M

    更新日期:1985-12-03 00:00:00

  • Sequence-specific solution structure of d-GGTACGCGTACC.

    abstract::Complete resonance assignments of nonexchangeable base protons and sugar protons in d-GGTACGCGTACC at 500 MHz have been obtained by two-dimensional correlated spectroscopy (COSY) and nuclear Overhauser enhancement spectroscopy (NOESY). The characteristic phase-sensitive multiplet patterns of the ntrasugar cross peaks ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00410a050

    authors: Chary KV,Hosur RV,Govil G,Chen CQ,Miles HT

    更新日期:1988-05-17 00:00:00

  • Isolation and characterization of titin T1 from bovine cardiac muscle.

    abstract::Methods were developed for isolation of bovine cardiac titin in the apparently full-sized T1 form. The pure protein could be obtained either in the denatured state after chromatography of myofibril extracts on Sephacryl S-1000 or in the native state using hydroxylapatite chromatography. Titin-specific chicken polyclon...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00193a012

    authors: Pan KM,Damodaran S,Greaser ML

    更新日期:1994-07-12 00:00:00

  • Structures of gangliosides from bovine adrenal medulla.

    abstract::Five gangliosides, accounting for over 95% of the total ganglioside fraction, were isolated from bovine adrenal medulla by preparative thin-layer chromatography and the carbohydrate structures determined by a combination of periodate oxidation and permethylation techniques. Partially methylated alditol acetates were g...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00678a026

    authors: Price H,Kundu S,Ledeen R

    更新日期:1975-04-08 00:00:00

  • Characterization of human aspartoacylase: the brain enzyme responsible for Canavan disease.

    abstract::Aspartoacylase catalyzes the deacetylation of N-acetylaspartic acid (NAA) to produce acetate and L-aspartate and is the only brain enzyme that has been shown to effectively metabolize NAA. Although the exact role of this enzymatic reaction has not yet been completely elucidated, the metabolism of NAA appears to be nec...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi052608w

    authors: Le Coq J,An HJ,Lebrilla C,Viola RE

    更新日期:2006-05-09 00:00:00

  • Directed evolution of the suicide protein O⁶-alkylguanine-DNA alkyltransferase for increased reactivity results in an alkylated protein with exceptional stability.

    abstract::Here we present a biophysical, structural, and computational analysis of the directed evolution of the human DNA repair protein O(6)-alkylguanine-DNA alkyltransferase (hAGT) into SNAP-tag, a self-labeling protein tag. Evolution of hAGT led not only to increased protein activity but also to higher stability, especially...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi2016537

    authors: Mollwitz B,Brunk E,Schmitt S,Pojer F,Bannwarth M,Schiltz M,Rothlisberger U,Johnsson K

    更新日期:2012-02-07 00:00:00

  • Pressure effects on dipalmitoylphosphatidylcholine bilayers measured by 2H nuclear magnetic resonance.

    abstract::The effects of pressure, up to 5 kbar, on multilamellar vesicles of 1,2-dipalmitoyl-sn-phosphatidylcholine perdeuterated in the acyl chains (DPPC-d62) were examined by using high-pressure NMR techniques. A deuterium probe was built, and the quadrupole splitting was measured against pressure at various temperatures. Th...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00227a022

    authors: Driscoll DA,Samarasinghe S,Adamy S,Jonas J,Jonas A

    更新日期:1991-04-02 00:00:00

  • A photolabile oligodeoxyribonucleotide probe of the peptidyltransferase center: identification of neighboring ribosomal components.

    abstract::In this work we report the synthesis of a radioactive, photolabile oligodeoxyribonucleotide probe and its exploitation in identifying 50S ribosomal subunit components neighboring its target site in 23S rRNA. The probe is complementary to 23S rRNA nucleotides 2497-2505, a single-stranded sequence that has been shown to...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00236a014

    authors: Muralikrishna P,Cooperman BS

    更新日期:1991-06-04 00:00:00

  • Steady-state FTIR spectra of the photoreduction of QA and QB in Rhodobacter sphaeroides reaction centers provide evidence against the presence of a proposed transient electron acceptor X between the two quinones.

    abstract::In the reaction center (RC) of the photosynthetic bacterium Rhodobacter sphaeroides, two ubiquinone molecules, QA and QB, play a pivotal role in the conversion of light energy into chemical free energy by coupling electron transfer to proton uptake. In native RCs, the transfer of an electron from QA to QB takes place ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi700297b

    authors: Breton J

    更新日期:2007-04-17 00:00:00

  • Efficient repair of 8-oxo-7,8-dihydrodeoxyguanosine in human and hamster xeroderma pigmentosum D cells.

    abstract::The repair of the endogenous lesion 8-oxo-7,8-dihydrodeoxyguanosine (8-oxodG) was investigated in the nucleotide excision repair mutant xeroderma pigmentosum D (XPD), using human normal or transformed XPD fibroblasts and the Chinese hamster XPD cell line UV5. In vivo repair of 8-oxodG induced by hydrogen peroxide trea...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi992610l

    authors: Cappelli E,Degan P,Thompson LH,Frosina G

    更新日期:2000-08-29 00:00:00

  • Direct Antibody Isolation on Cells Using Affinity-Tag-Guided Proximity Selection.

    abstract::Traditional antibody generation, using either phage display or animal immunization, relies on purified antigens. Many membrane proteins, such as G protein-coupled receptors, solute carriers, or ion channels, are important drug targets but very challenging for the formation of antibodies due to the difficulty of protei...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.0c00730

    authors: Chang YC,Kao CY,Tang HC,Huang MS,Mou KY

    更新日期:2020-11-10 00:00:00

  • Lateral diffusion and fluorescence microscope studies on a monoclonal antibody specifically bound to supported phospholipid bilayers.

    abstract::Supported phospholipid bilayers prepared by Langmuir-Blodgett techniques were introduced recently as a new model membrane system [Tamm, L.K., & McConnell, H.M. (1985) Biophys. J. 47, 105-113]. Here, supported bilayers are applied to study the lateral diffusion and lateral distribution of membrane-bound monoclonal anti...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00405a009

    authors: Tamm LK

    更新日期:1988-03-08 00:00:00

  • Amino acid and sequence analysis of the cytochrome and flavoprotein subunits of p-cresol methylhydroxylase.

    abstract::The flavocytochrome p-cresol methylhydroxylase from Pseudomonas putida has been reported to have a Mr of 114,000 and to consist of two subunits, a flavoprotein and a cytochrome c, each with a Mr of 58,000. Recent X-ray crystallographic data from our laboratories [Shamala, N., Lim, L. W., Mathews, F. S., McIntire, W., ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00368a021

    authors: McIntire W,Singer TP,Smith AJ,Mathews FS

    更新日期:1986-10-07 00:00:00

  • Purification and properties of an aminoglycoside acetyltransferase from Pseudomonas aeruginosa.

    abstract::An aminoglycoside 3-acetyltransferase [AAC(3)], possibly a new isoenzymic species of the 3-N-acetyltransferase group, was purified to apparent homogeneity from a crude extract of Pseudomonas aeruginosa, a gentamicin-resistant clinical isolate. The method of purification was consecutive column chromatography--(i) gel f...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00534a009

    authors: Coombe RG,George AM

    更新日期:1982-03-02 00:00:00

  • Active site modifications in a double mutant of liver alcohol dehydrogenase: structural studies of two enzyme-ligand complexes.

    abstract::The oxidation of alcohol to aldehyde by horse liver alcohol dehydrogenase (LADH) requires the transfer of a hydride ion from the alcohol substrate to the cofactor nicotinamide adenine dinucleotide (NAD). A quantum mechanical tunneling contribution to this hydride transfer step has been demonstrated in a number of LADH...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi973184b

    authors: Colby TD,Bahnson BJ,Chin JK,Klinman JP,Goldstein BM

    更新日期:1998-06-30 00:00:00

  • Tuning the equilibrium ion affinity and selectivity of the EF-hand calcium binding motif: substitutions at the gateway position.

    abstract::The ion binding parameters of the EF-hand Ca2+ binding motif are carefully tuned for different biological applications. The present study examines the contribution of the ninth position of the Ca2+-coordinating EF-loop to the tuning of Ca2+ affinity and selectivity, using the model EF-loop of the Escherichia coli gala...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi952430l

    authors: Drake SK,Lee KL,Falke JJ

    更新日期:1996-05-28 00:00:00