Different structural and kinetic requirements for the interaction of Ran with the Ran-binding domains from RanBP2 and importin-beta.

Abstract:

:The cytoplasmic disassembly of Ran.GTP.importin and Ran.GTP.exportin. cargo complexes is an essential step in the corresponding nuclear import and export cycles. It has previously been shown that such disassembly can be mediated by RanBP1 in the presence of RanGAP. The nuclear pore complex protein RanBP2 (Nup358) contains four Ran-binding domains (RanBDi) that might function like RanBP1. We used biophysical assays based on fluorescence-labeled probes and on surface plasmon resonance to investigate the dynamic interplay of Ran in its GDP- and GTP-complexed states with RanBDis and with importin-beta. We show that RanBP1 and the four RanBDis from RanBP2 have comparable affinities for Ran.GTP (10(8)-10(9) M(-1)). Deletion of Ran's C-terminal (211)DEDDDL(216) sequence weakens the interaction of Ran.GTP with RanBPis approximately 2000-fold, but accelerates the association of Ran.GTP with importin-beta 10-fold. Importin-beta binds Ran.GTP with a moderate rate, but attains a high affinity for Ran (K(D) = 140 pM) via an extremely low dissociation rate of 10(-5) s(-)(1). Association with Ran is accelerated 3-fold in the presence of RanBP1, which presumably prevents steric hindrance caused by the Ran C-terminus. In addition, we show that the RanBDis of RanBP2 are full equivalents of RanBP1 in that they also costimulate RanGAP-catalyzed GTP hydrolysis in Ran and relieve the GTPase block in a Ran.GTP.transportin complex. Our data suggest that the C-terminus of Ran functions like a loose tether in Ran.GTP complexes of importins or exportins that exit the nucleus. This flag is then recognized by the multiple RanBDis at or near the nuclear pore complex, allowing efficient disassembly of these Ran.GTP complexes.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Villa Braslavsky CI,Nowak C,Görlich D,Wittinghofer A,Kuhlmann J

doi

10.1021/bi001010f

subject

Has Abstract

pub_date

2000-09-26 00:00:00

pages

11629-39

issue

38

eissn

0006-2960

issn

1520-4995

pii

bi001010f

journal_volume

39

pub_type

杂志文章
  • Human SAS-6 C-Terminus Nucleates and Promotes Microtubule Assembly in Vitro by Binding to Microtubules.

    abstract::Centrioles are essential components of the animal centrosome and play crucial roles in the formation of cilia and flagella. They are cylindrical structures composed of nine triplet microtubules organized around a central cartwheel. Recent studies have identified spindle assembly abnormal protein SAS-6 as a critical co...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.5b00978

    authors: Gupta H,Badarudeen B,George A,Thomas GE,Gireesh KK,Manna TK

    更新日期:2015-10-20 00:00:00

  • Partial purification and characterization of a neutral protease which cleaves type IV collagen.

    abstract::A neutral protease has been extracted from the media of cultured metastatic tumor cells and purified approximately 1000 times after sequential ammonium sulfate fractionization, concanavalin A column chromatography, and molecular sieve chromatography. The protease has an apparent molecular weight of 70 000--80 000, is ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00504a017

    authors: Liotta LA,Tryggvason K,Garbisa S,Robey PG,Abe S

    更新日期:1981-01-06 00:00:00

  • Evolutionary coadaptation of the motif 2--acceptor stem interaction in the class II prolyl-tRNA synthetase system.

    abstract::Known crystal structures of class II aminoacyl-tRNA synthetases complexed to their cognate tRNAs reveal that critical acceptor stem contacts are made by the variable loop connecting the beta-strands of motif 2 located within the catalytic core of class II synthetases. To identify potential acceptor stem contacts made ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi001835p

    authors: Burke B,Yang F,Chen F,Stehlin C,Chan B,Musier-Forsyth K

    更新日期:2000-12-19 00:00:00

  • How Do Branched Detergents Stabilize GPCRs in Micelles?

    abstract::The structural and functional properties of G protein-coupled receptors (GPCRs) are often studied in a detergent micellar environment, but many GPCRs tend to denature or aggregate in short alkyl chain detergents. In our previous work [Lee, S., et al. (2016) J. Am. Chem. Soc.138, 15425-15433], we showed that GPCRs in a...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.0c00183

    authors: Lee S,Ghosh S,Jana S,Robertson N,Tate CG,Vaidehi N

    更新日期:2020-06-16 00:00:00

  • Reversible unfolding of ribosomal protein E-L30: an NMR study.

    abstract::Ribosomal protein E-L30 unfolds reversibly at pH values between 7.0 and 4.5. Unfolding of the protein involves a fast and a slow equilibrium, which depend on the degree of protonation of His19 and His33. Both the fast equilibrium between protonated and deprotonated histidines and the slow equilibrium between folded an...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00391a050

    authors: van de Ven FJ,Hilbers CW

    更新日期:1987-08-25 00:00:00

  • Calcium ionophore increases amyloid beta peptide production by cultured cells.

    abstract::Amyloid beta peptide (A beta) is released into the media of a variety of cells in culture during normal metabolism. The discovery of several missense mutations within or flanking the A beta region of the beta amyloid precursor protein (beta APP) in familial Alzheimer's disease provides strong evidence for a role of al...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00181a016

    authors: Querfurth HW,Selkoe DJ

    更新日期:1994-04-19 00:00:00

  • Affinity of native kappa-bungarotoxin and site-directed mutants for the muscle nicotinic acetylcholine receptor.

    abstract::kappa-Bungarotoxin (kappa-bgt) is a 66-residue peptide originally purified from snake venom that acts as an antagonist at certain acetylcholine receptors. It is one of four homologous kappa-neurotoxins that are distinguished from the structurally related alpha-neurotoxins by their ability to block the alpha 3-subunit-...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00248a004

    authors: Fiordalisi JJ,al-Rabiee R,Chiappinelli VA,Grant GA

    更新日期:1994-11-08 00:00:00

  • A glutamic acid specific serine protease utilizes a novel histidine triad in substrate binding.

    abstract::Proteases specific for cleavage after acidic residues have been implicated in several disease states, including epidermolysis, inflammation, and viral processing. A serine protease with specificity toward glutamic acid substrates (Glu-SGP) has been crystallized in the presence of a tetrapeptide ligand and its structur...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00094a001

    authors: Nienaber VL,Breddam K,Birktoft JJ

    更新日期:1993-11-02 00:00:00

  • Structure and function of PA4872 from Pseudomonas aeruginosa, a novel class of oxaloacetate decarboxylase from the PEP mutase/isocitrate lyase superfamily.

    abstract::Pseudomonas aeruginosa PA4872 was identified by sequence analysis as a structurally and functionally novel member of the PEP mutase/isocitrate lyase superfamily and therefore targeted for investigation. Substrate screens ruled out overlap with known catalytic functions of superfamily members. The crystal structure of ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi701954p

    authors: Narayanan BC,Niu W,Han Y,Zou J,Mariano PS,Dunaway-Mariano D,Herzberg O

    更新日期:2008-01-08 00:00:00

  • Formation and rejoining of deoxyribonucleic acid double-strand breaks induced in isolated cell nuclei by antineoplastic intercalating agents.

    abstract::The biochemical characteristics of the formation and disappearance of intercalator-induced DNA double-strand breaks (DSB) were studied in nuclei from mouse leukemia L1210 cells by using filter elution methodology [Bradley, M. O., & Kohn, K.W. (1979) Nucleic Acids Res. 7, 793-804]. The three intercalators used were 4'-...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00309a013

    authors: Pommier Y,Schwartz RE,Kohn KW,Zwelling LA

    更新日期:1984-07-03 00:00:00

  • Macrophage oxidation of L-arginine to nitrite and nitrate: nitric oxide is an intermediate.

    abstract::Previous studies have shown that murine macrophages immunostimulated with interferon gamma and Escherichia coli lipopolysaccharide synthesize NO2-, NO3-, and citrulline from L-arginine by oxidation of one of the two chemically equivalent guanido nitrogens. The enzymatic activity for this very unusual reaction was foun...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00424a003

    authors: Marletta MA,Yoon PS,Iyengar R,Leaf CD,Wishnok JS

    更新日期:1988-11-29 00:00:00

  • Monoclonal antibodies against distinct determinants of histone H5 bind to chromatin.

    abstract::A series of monoclonal antibodies specific for distinguishable epitopes in chromosomal protein histone H5 were obtained from mice immunized with either free H5 or H5 . RNA complexes. The antibodies elicited by H5 could be distinguished from those elicited by H5 . RNA by their binding to native or acid-denatured H5, by...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00310a012

    authors: Mendelson E,Bustin M

    更新日期:1984-07-17 00:00:00

  • Positive and negative hepatic regulation of the human type II phospholipase A2 gene.

    abstract::To identify the elements which regulate the liver transcription of the human type II phospholipase A2 gene and its stimulation by interleukin 6, the 5' flanking region from -1614 to +806 and several 3' and 5' deleted fragments have been analyzed in CAT assays. Negative regulatory elements have been located in the regi...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00189a017

    authors: Olivier JL,Fan Q,Salvat C,Ziari M,Kong L,Mangeney M,Bereziat G

    更新日期:1994-06-14 00:00:00

  • Zebrafish neuroglobin is a cell-membrane-penetrating globin.

    abstract::Neuroglobin (Ngb) is a recently discovered vertebrate heme protein that is expressed in the brain and can reversibly bind oxygen. Mammalian Ngb is involved in neuroprotection under oxidative stress conditions, such as ischemia and reperfusion. We previously demonstrated that human ferric Ngb binds to the alpha subunit...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi800286m

    authors: Watanabe S,Wakasugi K

    更新日期:2008-05-13 00:00:00

  • Redox enzyme engineering: conversion of human glutathione reductase into a trypanothione reductase.

    abstract::The substrate specificity of the human enzyme glutathione reductase was changed from its natural substrate glutathione to trypanothione [N1,N8-bis(glutathionyl)spermidine] by site-directed mutagenesis of two residues. The glutathione analogue, trypanothione, is the natural substrate for trypanothione reductase, an enz...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00239a006

    authors: Bradley M,Bücheler US,Walsh CT

    更新日期:1991-06-25 00:00:00

  • Structural and spectroscopic studies of the copper site of stellacyanin.

    abstract::The structure of the copper site in oxidized and reduced Rhus vernicifera stellacyanin has been studied by X-ray absorption (XAFS) spectroscopy at different pH values. Data for the oxidized protein are consistent with the fourth ligand being an O- or N-donating ligand rather than a cysteine from the disulfide bridge. ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00001a026

    authors: Strange RW,Reinhammar B,Murphy LM,Hasnain SS

    更新日期:1995-01-10 00:00:00

  • Spectroscopic studies of ascorbate oxidase. Electronic structure of the blue copper sites.

    abstract::Low-temperature electronic absorption and room temperature circular dichroism (CD) and magnetic circular dichroism (MCD) spectra are reported for ascorbate oxidase. Bands attributable to d-d electronic transitions in the type 1 (blue) coppers (2B2 ground state) have been observed at 5800, 10000, and 12000 cm-1 (1725, ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00510a044

    authors: Dooley DM,Dawson JH,Stephens PJ,Gray HB

    更新日期:1981-03-31 00:00:00

  • Disulfide-linked bovine beta-lactoglobulin dimers fold slowly, navigating a glassy folding landscape.

    abstract::To gain insight into the folding of large proteins, we constructed a bovine beta-lactoglobulin (beta-lg) dimeric mutant, A34C/C121A beta-lg. In the mutant, a free thiol group of wild-type beta-lg at Cys121 was removed and two beta-lg molecules were linked by a disulfide bridge through Cys34 created at the dimer's inte...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi8001715

    authors: Yagi M,Kameda A,Sakurai K,Nishimura C,Goto Y

    更新日期:2008-06-03 00:00:00

  • Formaldehyde metabolism by Escherichia coli. Carbon and solvent deuterium incorporation into glycerol, 1,2-propanediol, and 1,3-propanediol.

    abstract::Escherichia coli were grown on 14.3% uniformly 13C-labeled glucose as the sole carbon source and challenged anaerobically with 90% 13C-labeled formaldehyde. The major multiply labeled metabolites were identified by 13C NMR spectroscopy to be glycerol and 1,2-propanediol, and a minor metabolite was shown to be 1,3-prop...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00336a050

    authors: Hunter BK,Nicholls KM,Sanders JK

    更新日期:1985-07-16 00:00:00

  • Physical properties of myosin from aortic smooth muscle.

    abstract::Porcine aortic myosin is a smooth muscle contractile protein similar to its striated muscle counterpart. Electrophoresis in sodium dodecyl sulfate indicates that the molecule consists of three classes of subunits with polypeptide chain molecular weights of 192,000, 19,000, and 15,000. At 277 nm the absorption spectrum...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00576a003

    authors: Frederiksen DW

    更新日期:1979-05-01 00:00:00

  • NMR structure of navel orangeworm moth pheromone-binding protein (AtraPBP1): implications for pH-sensitive pheromone detection.

    abstract::The navel orangeworm, Amyelois transitella (Walker), is an agricultural insect pest that can be controlled by disrupting male-female communication with sex pheromones, a technique known as mating disruption. Insect pheromone-binding proteins (PBPs) provide fast transport of hydrophobic pheromones through the aqueous s...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9020132

    authors: Xu X,Xu W,Rayo J,Ishida Y,Leal WS,Ames JB

    更新日期:2010-02-23 00:00:00

  • Structure of FAD-bound L-aspartate oxidase: insight into substrate specificity and catalysis.

    abstract::L-Aspartate oxidase (Laspo) catalyzes the conversion of L-Asp to iminoaspartate, the first step in the de novo biosynthesis of NAD(+). This bacterial pathway represents a potential drug target since it is absent in mammals. The Laspo R386L mutant was crystallized in the FAD-bound catalytically competent form and its t...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi015939r

    authors: Bossi RT,Negri A,Tedeschi G,Mattevi A

    更新日期:2002-03-05 00:00:00

  • Two-dimensional 1H NMR studies of cytochrome c: hydrogen exchange in the N-terminal helix.

    abstract::The hydrogen exchange behavior of the N-terminal helical segment in horse heart cytochrome c was studied in both the reduced and the oxidized forms by use of two-dimensional nuclear magnetic resonance methods. The amide protons of the first six residues are not H bonded and exchange rapidly with solvent protons. The m...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00353a025

    authors: Wand AJ,Roder H,Englander SW

    更新日期:1986-03-11 00:00:00

  • Identification of 9-cis,13-cis-retinoic acid as a major circulating retinoid in plasma.

    abstract::In the course of measuring the concentrations of retinoic acids (RA) in bovine plasma, a major peak was observed which comigrated with 9-cis-RA on normal-phase high-performance liquid chromatography. Rechromatography of this retinoic on reverse-phase high-performance liquid chromatography showed that it was distinct f...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00004a013

    authors: Horst RL,Reinhardt TA,Goff JP,Nonnecke BJ,Gambhir VK,Fiorella PD,Napoli JL

    更新日期:1995-01-31 00:00:00

  • Effects of phosphorothioate and 2-amino groups in hammerhead ribozymes on cleavage rates and Mg2+ binding.

    abstract::Mg2+ is important for the RNase activity of the hammerhead ribozyme. To investigate the binding properties of Mg2+ to the hammerhead ribozyme, cleavage rates and CD spectra for substrates containing inosine or guanosine at the cleavage site were measured. The 2-amino group of this guanosine interfered with the rate of...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00235a005

    authors: Koizumi M,Ohtsuka E

    更新日期:1991-05-28 00:00:00

  • Glutathione reductase turned into trypanothione reductase: structural analysis of an engineered change in substrate specificity.

    abstract::Trypanosoma and Leishmania, pathogens responsible for diseases such as African sleeping sickness, Chagas' heart disease, or Oriental sore, are two of the very few genera that do not use the ubiquitous glutathione/glutathione reductase system to keep a stable cellular redox balance. Instead, they rely on trypanothione ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi963074p

    authors: Stoll VS,Simpson SJ,Krauth-Siegel RL,Walsh CT,Pai EF

    更新日期:1997-05-27 00:00:00

  • Strand orientation in the DNA quadruplex formed from the Oxytricha telomere repeat oligonucleotide d(G4T4G4) in solution.

    abstract::The structure formed from the DNA oligonucleotide d(G4T4G4) (Oxy-1.5), which contains the Oxytricha telomere repeat T4G4, has been investigated by two-dimensional 1H and 31P NMR spectroscopy. Sequence-specific assignments have been obtained for the 1H and 31P resonances, using a combination of methods including compar...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00084a040

    authors: Smith FW,Feigon J

    更新日期:1993-08-24 00:00:00

  • Essential thiol requirement to restore pterin- or substrate-binding capability and to regenerate native enzyme-type high-spin heme spectra in the Escherichia coli-expressed tetrahydrobiopterin-free oxygenase domain of neuronal nitric oxide synthase.

    abstract::Nitric oxide (NO) synthases (NOS) are thiolate-ligated heme-, tetrahydrobiopterin (BH(4))-, and flavin-containing monooxygenases which catalyze the NADPH-dependent conversion of L-arginine (L-Arg) to NO AND citrulline. NOS consists of two domains: an N-terminal oxygenase (heme- and BH(4)-bound) domain and a C-terminal...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi991580j

    authors: Sono M,Ledbetter AP,McMillan K,Roman LJ,Shea TM,Masters BS,Dawson JH

    更新日期:1999-11-30 00:00:00

  • Proton transfer limits protein translocation rate by the thylakoid DeltapH/Tat machinery.

    abstract::The thylakoid transmembrane DeltapH is the sole energy source driving translocation of precursor proteins by the DeltapH/Tat machinery. Consequently, proton translocation must be coupled to precursor translocation. For the precursor of the 17 kDa protein of the oxygen-evolving complex (pOE17), the protein translocatio...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi000115f

    authors: Musser SM,Theg SM

    更新日期:2000-07-18 00:00:00

  • Independent heterologous fibrillation of insulin and its B-chain peptide.

    abstract::Insulin is very prone to form amyloid fibrils under slightly destabilizing conditions, and the B-chain region plays a critical role in the fibrillation. We show here that the isolated B-chain peptide of bovine insulin also forms fibrils at both acidic and neutral pH. When a mixture of insulin and the B-chain peptide w...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi051658y

    authors: Hong DP,Fink AL

    更新日期:2005-12-20 00:00:00