Parametric estimate of intensity inhomogeneities applied to MRI.

Abstract:

:This paper presents a new approach to the correction of intensity inhomogeneities in magnetic resonance imaging (MRI) that significantly improves intensity-based tissue segmentation. The distortion of the image brightness values by a low-frequency bias field impedes visual inspection and segmentation. The new correction method called parametric bias field correction (PABIC) is based on a simplified model of the imaging process, a parametric model of tissue class statistics, and a polynomial model of the inhomogeneity field. We assume that the image is composed of pixels assigned to a small number of categories with a priori known statistics. Further we assume that the image is corrupted by noise and a low-frequency inhomogeneity field. The estimation of the parametric bias field is formulated as a nonlinear energy minimization problem using an evolution strategy (ES). The resulting bias field is independent of the image region configurations and thus overcomes limitations of methods based on homomorphic filtering. Furthermore, PABIC can correct bias distortions much larger than the image contrast. Input parameters are the intensity statistics of the classes and the degree of the polynomial function. The polynomial approach combines bias correction with histogram adjustment, making it well suited for normalizing the intensity histogram of datasets from serial studies. We present simulations and a quantitative validation with phantom and test images. A large number of MR image data acquired with breast, surface, and head coils, both in two dimensions and three dimensions, have been processed and demonstrate the versatility and robustness of this new bias correction scheme.

journal_name

IEEE Trans Med Imaging

authors

Styner M,Brechbühler C,Székely G,Gerig G

doi

10.1109/42.845174

subject

Has Abstract

pub_date

2000-03-01 00:00:00

pages

153-65

issue

3

eissn

0278-0062

issn

1558-254X

journal_volume

19

pub_type

杂志文章
  • A novel estimation method for physiological parameters in dynamic contrast-enhanced MRI: application of a distributed parameter model using Fourier-domain calculations.

    abstract::Dynamic contrast-enhanced magnetic resonance imaging (MRI) is a promising tool in the evaluation of tumor physiology. From rapidly acquired images and a model for contrast agent pharmacokinetics, physiological parameters are derived. One pharmacokinetic model, the tissue homogeneity model, enables estimation of both b...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2009.2016212

    authors: Garpebring A,Ostlund N,Karlsson M

    更新日期:2009-09-01 00:00:00

  • A system for real-time XMR guided cardiovascular intervention.

    abstract::The hybrid magnetic resonance (MR)/X-ray suite (XMR) is a recently introduced imaging solution that provides new possibilities for guidance of cardiovascular catheterization procedures. We have previously described and validated a technique based on optical tracking to register MR and X-ray images obtained from the sl...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2005.856731

    authors: Rhode KS,Sermesant M,Brogan D,Hegde S,Hipwell J,Lambiase P,Rosenthal E,Bucknall C,Qureshi SA,Gill JS,Razavi R,Hill DL

    更新日期:2005-11-01 00:00:00

  • Neuron Segmentation With High-Level Biological Priors.

    abstract::We present a novel approach to the problem of neuron segmentation in image volumes acquired by an electron microscopy. Existing methods, such as agglomerative or correlation clustering, rely solely on boundary evidence and have problems where such an evidence is lacking (e.g., incomplete staining) or ambiguous (e.g., ...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2017.2712360

    authors: Krasowski NE,Beier T,Knott GW,Kothe U,Hamprecht FA,Kreshuk A

    更新日期:2018-04-01 00:00:00

  • Renal Segmentation From 3D Ultrasound via Fuzzy Appearance Models and Patient-Specific Alpha Shapes.

    abstract::Ultrasound (US) imaging is the primary imaging modality for pediatric hydronephrosis, which manifests as the dilation of the renal collecting system (CS). In this paper, we present a new framework for the segmentation of renal structures, kidney and CS, from 3DUS scans. First, the kidney is segmented using an active s...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2016.2572641

    authors: Cerrolaza JJ,Safdar N,Biggs E,Jago J,Peters CA,Linguraru MG

    更新日期:2016-11-01 00:00:00

  • Detecting Surgical Tools by Modelling Local Appearance and Global Shape.

    abstract::Detecting tools in surgical videos is an important ingredient for context-aware computer-assisted surgical systems. To this end, we present a new surgical tool detection dataset and a method for joint tool detection and pose estimation in 2d images. Our two-stage pipeline is data-driven and relaxes strong assumptions ...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2015.2450831

    authors: Bouget D,Benenson R,Omran M,Riffaud L,Schiele B,Jannin P

    更新日期:2015-12-01 00:00:00

  • Gaussian process models of dynamic PET for functional volume definition in radiation oncology.

    abstract::In routine oncologic positron emission tomography (PET), dynamic information is discarded by time-averaging the signal to produce static images of the "standardised uptake value" (SUV). Defining functional volumes of interest (VOIs) in terms of SUV is flawed, as values are affected by confounding factors and the chose...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2012.2193896

    authors: Shepherd T,Owenius R

    更新日期:2012-08-01 00:00:00

  • MRI of moving subjects using multislice snapshot images with volume reconstruction (SVR): application to fetal, neonatal, and adult brain studies.

    abstract::Motion degrades magnetic resonance (MR) images and prevents acquisition of self-consistent and high-quality volume images. A novel methodology, Snapshot magnetic resonance imaging (MRI) with Volume Reconstruction (SVR) has been developed for imaging moving subjects at high resolution and high signal-to-noise ratio (SN...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2007.895456

    authors: Jiang S,Xue H,Glover A,Rutherford M,Rueckert D,Hajnal JV

    更新日期:2007-07-01 00:00:00

  • Separation of Metabolites and Macromolecules for Short-TE 1H-MRSI Using Learned Component-Specific Representations.

    abstract::Short-echo-time (TE) proton magnetic resonance spectroscopic imaging (MRSI) allows for simultaneously mapping a number of molecules in the brain, and has been recognized as an important tool for studying in vivo biochemistry in various neuroscience and disease applications. However, separation of the metabolite and ma...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2020.3048933

    authors: Li Y,Wang Z,Sun R,Lam F

    更新日期:2021-01-04 00:00:00

  • Progressive coding and transmission of digital diagnostic pictures.

    abstract::In radiology, as a result of the increased utilization of digital imaging modalities, such as computed tomography (CT) and magnetic resonance imaging (MRI), over a third of the images produced in a typical radiology department are currently in digital form, and this percentage is steadily increasing. Image compression...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.1986.4307750

    authors: Elnahas SE,Tzou KH,Cox JR,Hill RL,Jost R

    更新日期:1986-01-01 00:00:00

  • Ultrafast Ultrasound Imaging With Cascaded Dual-Polarity Waves.

    abstract::Ultrafast ultrasound imaging using plane or diverging waves, instead of focused beams, has advanced greatly the development of novel ultrasound imaging methods for evaluating tissue functions beyond anatomical information. However, the sonographic signal-to-noise ratio (SNR) of ultrafast imaging remains limited due to...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2017.2781261

    authors: Zhang Y,Guo Y,Lee WN

    更新日期:2018-04-01 00:00:00

  • Iterative image reconstruction using inverse fourier rebinning for fully 3-D PET.

    abstract::We describe a fast forward and back projector pair based on inverse Fourier rebinning for use in iterative image reconstruction for fully three-dimensional (3-D) positron emission tomography (PET). The projector pair is used as part of a factored system matrix that takes into account detector-pair response by using sh...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:

    authors: Cho S,Li Q,Ahn S,Bai B,Leahy RM

    更新日期:2007-03-01 00:00:00

  • Simultaneous Photoacoustic Imaging and Cavitation Mapping in Shockwave Lithotripsy.

    abstract::Kidney stone disease is a major health problem worldwide. Shockwave lithotripsy (SWL), which uses high-energy shockwave pulses to break up kidney stones, is extensively used in clinic. However, despite its noninvasiveness, SWL can produce cavitation in vivo. The rapid expansion and violent collapse of cavitation bubbl...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2019.2928740

    authors: Li M,Lan B,Sankin G,Zhou Y,Liu W,Xia J,Wang D,Trahey G,Zhong P,Yao J

    更新日期:2020-02-01 00:00:00

  • Compressed Sensing Doppler Ultrasound Reconstruction Using Block Sparse Bayesian Learning.

    abstract::In this paper we propose a framework for using duplex Doppler ultrasound systems. These type of systems need to interleave the acquisition and display of a B-mode image and of the pulsed Doppler spectrogram. In a recent study (Richy , 2013), we have shown that compressed sensing-based reconstruction of Doppler signal ...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2015.2504240

    authors: Lorintiu O,Liebgott H,Friboulet D

    更新日期:2016-04-01 00:00:00

  • Automatic correction of motion artifacts in magnetic resonance images using an entropy focus criterion.

    abstract::We present the use of an entropy focus criterion to enable automatic focusing of motion corrupted magnetic resonance images. We demonstrate the principle using illustrative examples from cooperative volunteers. Our technique can determine unknown patient motion or use knowledge of motion from other measures as a start...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/42.650886

    authors: Atkinson D,Hill DL,Stoyle PN,Summers PE,Keevil SF

    更新日期:1997-12-01 00:00:00

  • Anatomical model matching with fuzzy implicit surfaces for segmentation of thoracic volume scans.

    abstract::Many segmentation methods for thoracic volume data require manual input in the form of a seed point, initial contour, volume of interest etc. The aim of the work presented here is to further automate this segmentation initialization step. In this paper an anatomical modeling and matching method is proposed to coarsely...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/42.764893

    authors: Lelieveldt BP,van der Geest RJ,Rezaee MR,Bosch JG,Reiber JH

    更新日期:1999-03-01 00:00:00

  • Detection and Localization of Ultrasound Scatterers Using Convolutional Neural Networks.

    abstract::Delay-and-sum (DAS) beamforming is unable to identify individual scatterers when their density is so high that their point spread functions overlap. This paper proposes a convolutional neural network (CNN)-based method to detect and localize high-density scatterers, some of which are closer than the resolution limit o...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2020.3006445

    authors: Youn J,Ommen ML,Stuart MB,Thomsen EV,Larsen NB,Jensen JA

    更新日期:2020-12-01 00:00:00

  • The n-PI-method for helical cone-beam CT.

    abstract::A new class of acquisition schemes for helical cone-beam computed tomography (CB-CT) scanning is introduced, and their effect on the reconstruction methods is analyzed. These acquisition schemes are based on a new detector shape that is bounded by the helix. It will be shown that the data acquired with these schemes a...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/42.887834

    authors: Proksa R,Köhler T,Grass M,Timmer J

    更新日期:2000-09-01 00:00:00

  • Anti-aliasing weighting functions for single-slice helical CT.

    abstract::Spatially variant longitudinal aliasing plagues most volumes reconstructed from single-slice helical computed tomography data, and its presence can degrade resolution and distort image structures. We have recently developed a Fourier-based approach to longitudinal interpolation in helical computed tomography that can,...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2002.803104

    authors: La Rivière PJ,Pan X

    更新日期:2002-08-01 00:00:00

  • Parameter relations for the Shinnar-Le Roux selective excitation pulse design algorithm [NMR imaging].

    abstract::An overview of the Shinnar-Le Roux (SLR) algorithm is presented. It is shown how the performance of SLR pulses can be very accurately specified analytically. This reveals how to design a pulse that produces a specified slice profile and allows the pulse designer to trade off analytically the parameters describing the ...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/42.75611

    authors: Pauly J,Le Roux P,Nishimura D,Macovski A

    更新日期:1991-01-01 00:00:00

  • Virtual tagging: numerical considerations and phantom validation.

    abstract::This paper presents a virtual tagging framework for measuring, as well as visualising, myocardial deformation using magnetic resonance (MR) velocity imaging. Tagging grids are allocated artificially according to the deformation gradient with varying shapes and densities. The control points are then deformed such that ...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2002.804429

    authors: Masood S,Gao J,Yang GZ

    更新日期:2002-09-01 00:00:00

  • Feature extraction in carpal-bone analysis.

    abstract::Hand-bone analysis with image processing techniques using a digital radiograph can be used to assess skeletal age. The analysis consists of two steps: phalangeal and carpal bone analysis. The carpal bone analysis is discussed. First, the carpal bone region of interest (CROI) is defined using a standard thresholding te...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/42.222665

    authors: Pietka E,Kaabi L,Kuo ML,Huang HK

    更新日期:1993-01-01 00:00:00

  • Compressive Deconvolution in Medical Ultrasound Imaging.

    abstract::The interest of compressive sampling in ultrasound imaging has been recently extensively evaluated by several research teams. Following the different application setups, it has been shown that the RF data may be reconstructed from a small number of measurements and/or using a reduced number of ultrasound pulse emissio...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2015.2493241

    authors: Chen Z,Basarab A,Kouamé D

    更新日期:2016-03-01 00:00:00

  • Optimization of MRI Gradient Coils With Explicit Peripheral Nerve Stimulation Constraints.

    abstract::Peripheral Nerve Stimulation (PNS) limits the acquisition rate of Magnetic Resonance Imaging data for fast sequences employing powerful gradient systems. The PNS characteristics are currently assessed after the coil design phase in experimental stimulation studies using constructed coil prototypes. This makes it diffi...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2020.3023329

    authors: Davids M,Guerin B,Klein V,Wald LL

    更新日期:2021-01-01 00:00:00

  • Improved Contrast-Enhanced Power Doppler Using a Coherence-Based Estimator.

    abstract::While plane-wave imaging can improve the performance of power Doppler by enabling much longer ensembles than systems using focused beams, the long-ensemble averaging of the zero-lag autocorrelation R(0) estimates does not directly decrease the mean noise level, but only decreases its variance. Spatial variation of the...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2017.2699672

    authors: Tremblay-Darveau C,Bar-Zion A,Williams R,Sheeran PS,Milot L,Loupas T,Adam D,Bruce M,Burns PN

    更新日期:2017-09-01 00:00:00

  • Brachytherapy seed localization using geometric and linear programming techniques.

    abstract::We propose an optimization algorithm to solve the brachytherapy seed localization problem in prostate brachytherapy. Our algorithm is based on novel geometric approaches to exploit the special structure of the problem and relies on a number of key observations which help us formulate the optimization problem as a mini...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2007.900740

    authors: Singh V,Mukherjee L,Xu J,Hoffmann KR,Dinu PM,Podgorsak M

    更新日期:2007-09-01 00:00:00

  • Surface Reconstruction for free-space 360 degrees fluorescence molecular tomography and the effects of animal motion.

    abstract::Complete projection (360 degrees ) free-space fluorescence tomography of opaque media is poised to enable 3-D imaging through entire small animals in vivo with improved depth resolution compared to 360 degrees -projection fiber-based systems or limited-view angle systems. This approach can lead to a new generation of ...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2007.904662

    authors: Lasser T,Soubret A,Ripoll J,Ntziachristos V

    更新日期:2008-02-01 00:00:00

  • An explanation of the effects of Squashing in limited angle tomography.

    abstract::The effects of Squashing, an algorithm introduced by J.A. Reeds and L.A. Shepp (see ibid., vol.MI-6, no.2, p.89-97, June 1987), are described. It is proven that Squashing induces a weight function upon the projections. Intuitive and numerical evidence is presented showing that this weight function is not desirable at ...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/42.57761

    authors: Olson T,Jaffe JS

    更新日期:1990-01-01 00:00:00

  • MRF-based deformable registration and ventilation estimation of lung CT.

    abstract::Deformable image registration is an important tool in medical image analysis. In the case of lung computed tomography (CT) registration there are three major challenges: large motion of small features, sliding motions between organs, and changing image contrast due to compression. Recently, Markov random field (MRF)-b...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2013.2246577

    authors: Heinrich MP,Jenkinson M,Brady M,Schnabel JA

    更新日期:2013-07-01 00:00:00

  • Efficient Compressed Sensing SENSE pMRI Reconstruction With Joint Sparsity Promotion.

    abstract::The theory and techniques of compressed sensing (CS) have shown their potential as a breakthrough in accelerating k-space data acquisition for parallel magnetic resonance imaging (pMRI). However, the performance of CS reconstruction models in pMRI has not been fully maximized, and CS recovery guarantees for pMRI are l...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2015.2474383

    authors: Chun IY,Adcock B,Talavage TM

    更新日期:2016-01-01 00:00:00

  • Joint Bayesian-Incorporating Estimation of Multiple Gaussian Graphical Models to Study Brain Connectivity Development in Adolescence.

    abstract::Adolescence is a transitional period between the childhood and adulthood with physical changes, as well as increasing emotional development. Studies have shown that the emotional sensitivity is related to a second period of rapid brain growth. However, there is little focus on the trend of brain development during thi...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2019.2926667

    authors: Zhang A,Cai B,Hu W,Jia B,Liang F,Wilson TW,Stephen JM,Calhoun VD,Wang YP

    更新日期:2020-02-01 00:00:00