Electron-nuclear double resonance and hyperfine sublevel correlation spectroscopic studies of flavodoxin mutants from Anabaena sp. PCC 7119.

Abstract:

:The influence of the amino acid residues surrounding the flavin ring in the flavodoxin of the cyanobacterium Anabaena PCC 7119 on the electron spin density distribution of the flavin semiquinone was examined in mutants of the key residues Trp(57) and Tyr(94) at the FMN binding site. Neutral semiquinone radicals of the proteins were obtained by photoreduction and examined by electron-nuclear double resonance (ENDOR) and hyperfine sublevel correlation (HYSCORE) spectroscopies. Significant differences in electron density distribution were observed in the flavodoxin mutants Trp(57) --> Ala and Tyr(94) --> Ala. The results indicate that the presence of a bulky residue (either aromatic or aliphatic) at position 57, as compared with an alanine, decreases the electron spin density in the nuclei of the benzene flavin ring, whereas an aromatic residue at position 94 increases the electron spin density at positions N(5) and C(6) of the flavin ring. The influence of the FMN ribityl and phosphate on the flavin semiquinone was determined by reconstituting apoflavodoxin samples with riboflavin and with lumiflavin. The coupling parameters of the different nuclei of the isoalloxazine group, as detected by ENDOR and HYSCORE, were very similar to those of the native flavodoxin. This indicates that the protein conformation around the flavin ring and the electron density distribution in the semiquinone form are not influenced by the phosphate and the ribityl of FMN.

journal_name

Biophys J

journal_title

Biophysical journal

authors

Medina M,Lostao A,Sancho J,Gómez-Moreno C,Cammack R,Alonso PJ,Martínez JI

doi

10.1016/S0006-3495(99)77017-7

subject

Has Abstract

pub_date

1999-09-01 00:00:00

pages

1712-20

issue

3

eissn

0006-3495

issn

1542-0086

pii

S0006-3495(99)77017-7

journal_volume

77

pub_type

杂志文章
  • Subthreshold oscillatory responses of the Hodgkin-Huxley cable model for the squid giant axon.

    abstract::The classical cable equation, in which membrane conductance is considered constant, is modified by including the linearized effect of membrane potential on sodium and potassium ionic currents, as formulated in the Hodgkin-Huxley equations for the squid giant axon. The resulting partial differential equation is solved ...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/S0006-3495(69)86446-5

    authors: Sabah NH,Leibovic KN

    更新日期:1969-10-01 00:00:00

  • Calcium channel block by (-)devapamil is affected by the sequence environment and composition of the phenylalkylamine receptor site.

    abstract::The pore-forming alpha 1 subunit of L-type calcium (Ca2+) channels is the molecular target of Ca2+ channel blockers such as phenylalkylamines (PAAs). Association and dissociation rates of (-)devapamil were compared for a highly PAA-sensitive L-type Ca2+ channel chimera (Lh) and various class A Ca2+ channel mutants. Th...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/S0006-3495(97)78056-1

    authors: Degtiar VE,Aczél S,Döring F,Timin EN,Berjukow S,Kimball D,Mitterdorfer J,Hering S

    更新日期:1997-07-01 00:00:00

  • Mode of action of iberiotoxin, a potent blocker of the large conductance Ca(2+)-activated K+ channel.

    abstract::Iberiotoxin, a toxin purified from the scorpion Buthus tamulus is a 37 amino acid peptide having 68% homology with charybdotoxin. Charybdotoxin blocks large conductance Ca(2+)-activated K+ channels at nanomolar concentrations from the external side only (Miller, C., E. Moczydlowski, R. Latorre, and M. Phillips. 1985. ...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/S0006-3495(92)81630-2

    authors: Candia S,Garcia ML,Latorre R

    更新日期:1992-08-01 00:00:00

  • Design Rules for Membrane-Embedded Voltage-Sensing Nanoparticles.

    abstract::Voltage-sensing dyes and voltage-sensing fluorescence proteins have been continually improved and as a result have provided a wealth of insights into neuronal circuits. Further improvements in voltage-sensing dyes and voltage-sensing fluorescence proteins are needed, however, for routine detection of single action pot...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/j.bpj.2016.12.047

    authors: Park K,Weiss S

    更新日期:2017-02-28 00:00:00

  • Antagonistic effects of cofilin, beryllium fluoride complex, and phalloidin on subdomain 2 and nucleotide-binding cleft in F-actin.

    abstract::Cofilin/ADF, beryllium fluoride complex (BeFx), and phalloidin have opposing effects on actin filament structure and dynamics. Cofilin/ADF decreases the stability of F-actin by enhancing disorder in subdomain 2, and by severing and accelerating the depolymerization of the filament. BeFx and phalloidin stabilize the su...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1529/biophysj.106.087767

    authors: Muhlrad A,Ringel I,Pavlov D,Peyser YM,Reisler E

    更新日期:2006-12-15 00:00:00

  • Reassessment of the Basis of Cell Size Control Based on Analysis of Cell-to-Cell Variability.

    abstract::Fundamental mechanisms governing cell size control and homeostasis are still poorly understood. The relationship between sizes at division and birth in single cells is used as a metric to categorize the basis of size homeostasis. Cells dividing at a fixed size regardless of birth size (sizer) are expected to show a di...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/j.bpj.2019.09.031

    authors: Facchetti G,Knapp B,Chang F,Howard M

    更新日期:2019-11-05 00:00:00

  • Odorant-induced currents in intact patches from rat olfactory receptor neurons: theory and experiment.

    abstract::Odorant-induced currents in mammalian olfactory receptor neurons have proved difficult to obtain reliably using conventional whole-cell recording. By using a mathematical model of the electrical circuit of the patch and rest-of-cell, we demonstrate how cell-attached patch measurements can be used to quantitatively ana...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/S0006-3495(97)78791-5

    authors: Chiu P,Lynch JW,Barry PH

    更新日期:1997-03-01 00:00:00

  • Bioelectrorheological model of the cell. 3. Viscoelastic shear deformation of the membrane.

    abstract::An analytical electromechanical model of a spherical cell exposed to an alternating electric field was used to calculate shear stress generated in the cellular membrane. Shape deformation of Neurospora crassa (slime) spheroplasts was measured. Statistical analysis permitted empirical evaluation of creep of the cellula...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/S0006-3495(92)81866-0

    authors: Poznański J,Pawłowski P,Fikus M

    更新日期:1992-03-01 00:00:00

  • Are DNA transcription factor proteins maxwellian demons?

    abstract::Transcription factor (TF) proteins rapidly locate unique target sites on long genomic DNA molecules--and bind to them--during gene regulation. The search mechanism is known to involve a combination of three-dimensional diffusion through the bulk of the cell and one-dimensional sliding diffusion along the DNA. It is be...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1529/biophysj.108.129825

    authors: Hu L,Grosberg AY,Bruinsma R

    更新日期:2008-08-01 00:00:00

  • Effects of ultraviolet irradiation on the rate and sequence of DNA replication in synchronized Chinese hamster cells.

    abstract::The effects of ultraviolet light (UV) irradiation on the rate of DNA replication in synchronized Chinese hamster ovary (CHO) cells were investigated. A technique for measuring semiconservative DNA replication was employed that involved growing the cells in medium containing 5-bromodeoxyuridine and subsequently determi...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/S0006-3495(76)85706-2

    authors: Meyn RE,Hewitt RR,Thomas LF,Humphrey RM

    更新日期:1976-05-01 00:00:00

  • DNA diffusion in mucus: effect of size, topology of DNAs, and transfection reagents.

    abstract::DNA represents a promising therapeutic and prophylactic macromolecule in treating genetic diseases, infectious diseases and cancers. The therapeutic potential of DNA is directly related to how DNA transports within the targeted tissue. In this study, fluorescence photobleaching recovery was used to examine the diffusi...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1529/biophysj.105.077404

    authors: Shen H,Hu Y,Saltzman WM

    更新日期:2006-07-15 00:00:00

  • High-resolution conformation and backbone dynamics of a soluble aggregate of apomyoglobin119.

    abstract::The structure and dynamics of soluble misfolded aggregates are poorly understood, despite their importance in protein science and disease. Water-soluble self-associated species that do not become insoluble over time are invaluable tools for high-resolution conformational studies aimed at dissecting the determinants of...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/j.bpj.2010.12.3722

    authors: Rajagopalan S,Kurt N,Cavagnero S

    更新日期:2011-02-02 00:00:00

  • Induced fit and the entropy of structural adaptation in the complexation of CAP and lambda-repressor with cognate DNA sequences.

    abstract::Molecular dynamics (MD) simulations of 5 ns on protein-DNA complexes of catabolite-activator protein (CAP), lambda-repressor, and their corresponding uncomplexed protein and DNA, are reported. These cases represent two extremes of DNA bending, with CAP DNA bent severely and the lambda-operator nearly straight when com...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1529/biophysj.104.053843

    authors: Dixit SB,Andrews DQ,Beveridge DL

    更新日期:2005-05-01 00:00:00

  • In situ muGISAXS: I. Experimental setup for submicron study of protein nucleation and growth.

    abstract::In this study, we used microbeam grazing-incidence small-angle x-ray scattering (muGISAXS) to investigate in situ protein nucleation and crystal growth assisted by a protein nanotemplate, and introduced certain innovations to improve the method. Our aim was to understand the protein nanotemplate method in detail, as t...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/j.bpj.2010.03.069

    authors: Gebhardt R,Pechkova E,Riekel C,Nicolini C

    更新日期:2010-08-09 00:00:00

  • Stalk model of membrane fusion: solution of energy crisis.

    abstract::Membrane fusion proceeds via formation of intermediate nonbilayer structures. The stalk model of fusion intermediate is commonly recognized to account for the major phenomenology of the fusion process. However, in its current form, the stalk model poses a challenge. On one hand, it is able to describe qualitatively th...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/S0006-3495(02)75450-7

    authors: Kozlovsky Y,Kozlov MM

    更新日期:2002-02-01 00:00:00

  • Lipid bilayer deformation and the free energy of interaction of a Kv channel gating-modifier toxin.

    abstract::A number of membrane proteins act via binding at the water/lipid bilayer interface. An important example of such proteins is provided by the gating-modifier toxins that act on voltage-gated potassium (Kv) channels. They are thought to partition to the headgroup region of lipid bilayers, and so provide a good system fo...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1529/biophysj.108.130971

    authors: Wee CL,Gavaghan D,Sansom MS

    更新日期:2008-10-01 00:00:00

  • Modeling Loop Composition and Ion Concentration Effects in RNA Hairpin Folding Stability.

    abstract::The ability to accurately predict RNA hairpin structure and stability for different loop sequences and salt conditions is important for understanding, modeling, and designing larger RNA folds. However, traditional RNA secondary structure models cannot treat loop-sequence and ionic effects on RNA hairpin folding. Here,...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/j.bpj.2020.07.042

    authors: Zhao C,Zhang D,Jiang Y,Chen SJ

    更新日期:2020-10-06 00:00:00

  • Cations as switches of amyloid-mediated membrane disruption mechanisms: calcium and IAPP.

    abstract::Disruption of the integrity of the plasma membrane by amyloidogenic proteins is linked to the pathogenesis of a number of common age-related diseases. Although accumulating evidence suggests that adverse environmental stressors such as unbalanced levels of metal ions may trigger amyloid-mediated membrane damage, many ...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/j.bpj.2012.11.3811

    authors: Sciacca MF,Milardi D,Messina GM,Marletta G,Brender JR,Ramamoorthy A,La Rosa C

    更新日期:2013-01-08 00:00:00

  • Charge movement and SR calcium release in frog skeletal muscle can be related by a Hodgkin-Huxley model with four gating particles.

    abstract::Charge movement currents (IQ) and calcium transients (delta[Ca2+]) were measured simultaneously in frog skeletal muscle fibers, voltage clamped in a double vaseline gap chamber, using Antipyrylazo III as the calcium indicator. The rate of release of calcium from the SR (Rrel) was calculated from the calcium transients...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/S0006-3495(92)81920-3

    authors: Simon BJ,Hill DA

    更新日期:1992-05-01 00:00:00

  • Voltage-dependent block by saxitoxin of sodium channels incorporated into planar lipid bilayers.

    abstract::We have previously studied single, voltage-dependent, saxitoxin-(STX) blockable sodium channels from rat brain in planar lipid bilayers, and found that channel block by STX was voltage-dependent. Here we describe the effect of voltage on the degree of block and on the kinetics of the blocking reaction. From their volt...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/S0006-3495(84)84156-9

    authors: French RJ,Worley JF 3rd,Krueger BK

    更新日期:1984-01-01 00:00:00

  • Long-residency hydration, cation binding, and dynamics of loop E/helix IV rRNA-L25 protein complex.

    abstract::Molecular dynamics simulations of RNA-protein complex between Escherichia coli loop E/helix IV (LE/HeIV) rRNA and L25 protein reveal a qualitative agreement between the experimental and simulated structures. The major groove of LE is a prominent rRNA cation-binding site. Divalent cations rigidify the LE major groove g...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1529/biophysj.104.047126

    authors: Réblová K,Spacková N,Koca J,Leontis NB,Sponer J

    更新日期:2004-11-01 00:00:00

  • On simulating lipid bilayers with an applied surface tension: periodic boundary conditions and undulations.

    abstract::As sketched in Fig. 1, a current molecular dynamics computer simulation of a lipid bilayer fails to capture significant features of the macroscopic system, including long wavelength undulations. Such fluctuations are intrinsically connected to the value of the macroscopic (or thermodynamic) surface tension (cf. Eqs. 1...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/S0006-3495(96)79337-2

    authors: Feller SE,Pastor RW

    更新日期:1996-09-01 00:00:00

  • Effectors of hemoglobin. Separation of allosteric and affinity factors.

    abstract::The relative contributions of the allosteric and affinity factors toward the change in p50 have been calculated for a series of effectors of hemoglobin (Hb). Shifts in the ligand affinity of deoxy Hb and the values for 50% ligand saturation (p50) were obtained from oxygen equilibrium data. Because the high-affinity pa...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/S0006-3495(90)82556-X

    authors: Marden MC,Bohn B,Kister J,Poyart C

    更新日期:1990-03-01 00:00:00

  • Hydrophilic linkers and polar contacts affect aggregation of FG repeat peptides.

    abstract::Transport of large proteins into the nucleus involves two events, binding of the cargo protein to a transport receptor in the cytoplasm and passage of the cargo-transporter complex through the selective permeability barrier of the nuclear pore complex. The permeability barrier is formed by largely disordered polypepti...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/j.bpj.2010.02.049

    authors: Dölker N,Zachariae U,Grubmüller H

    更新日期:2010-06-02 00:00:00

  • PROPERTIES OF DOUBLE-STRANDED DNA AS A POLYELECTROLYTE.

    abstract::The stability of the structure of double-stranded DNA in the salt-free solution is discussed on the basis of the polyelectrolyte theory. Assuming that DNA is an infinitely long rod, and the formation of double strands is divided into combining process and folding process, the free energy changes required in these proc...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/s0006-3495(63)86831-9

    authors: OHNISHI T

    更新日期:1963-11-01 00:00:00

  • A method for determining transmembrane helix association and orientation in detergent micelles using small angle x-ray scattering.

    abstract::Solution small angle x-ray scattering can be used to study the association of transmembrane proteins solubilized in detergent micelles. We have used the alpha-helical transmembrane domain of the human erythrocyte glycophorin A (GpA) fused to the carboxyl terminus of monomeric staphylococcal nuclease (SN/GpA) as a mode...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/S0006-3495(99)76956-0

    authors: Bu Z,Engelman DM

    更新日期:1999-08-01 00:00:00

  • DNA multiphoton absorption generates localized damage for studying repair dynamics in live cells.

    abstract::Investigations into the spatiotemporal dynamics of DNA repair using live-cell imaging are aided by the ability to generate well defined regions of ultravioletlike photolesions in an optical microscope. We demonstrate that multiphoton excitation of DNA in live cells with visible femtosecond pulses produces thymine cycl...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/j.bpj.2011.09.031

    authors: Daddysman MK,Fecko CJ

    更新日期:2011-11-02 00:00:00

  • Estimation of anisotropic optical parameters of tissue in a slab geometry.

    abstract::The scattering and absorption coefficients of many homogeneous biological tissues such as muscle, skin, white matter in the brain, and dentin are often anisotropically oriented with respect to their bounding interface. In consequence the curves of equal intensity of re-emitted light on the surface of the slab will no ...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1529/biophysj.104.058305

    authors: Dudko OK,Weiss GH

    更新日期:2005-05-01 00:00:00

  • Ground and excited states of retinal schiff base chromophores by multiconfigurational perturbation theory.

    abstract::We have studied the wavelength dependence of retinal Schiff base absorbencies on the protonation state of the chromophore at the multiconfigurational level of theory using second order perturbation theory (CASPT2) within an atomic natural orbital basis set on MP2 optimized geometries. Quantitative agreement between ca...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1529/biophysj.106.087122

    authors: Sekharan S,Weingart O,Buss V

    更新日期:2006-07-01 00:00:00

  • Protein stiffening and entropic stabilization in the subdenaturing limit of guanidine hydrochloride.

    abstract::Subdenaturing concentrations of guanidine hydrochloride (GdnHCl) stabilize proteins. For ferrocytochrome c the stabilization is detected at subglobal level with no measured change in global stability. These deductions are made by comparing observed rates of thermally driven ferrocytochrome cHCO reactions with global u...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1529/biophysj.104.044701

    authors: Kumar R,Prabhu NP,Yadaiah M,Bhuyan AK

    更新日期:2004-10-01 00:00:00