A co-activator of nitrogen-regulated transcription in Saccharomyces cerevisiae.

Abstract:

:In Saccharomyces cerevisiae, the transcription factors Gln3p and Nil1p of the GATA family play a determinant role in expression of genes that are subject to nitrogen catabolite repression. Here we report the isolation of a new yeast mutant, gan1-1, exhibiting dramatically decreased NAD-linked glutamate dehydrogenase (NAD-GDH) and glutamine synthetase (GS) activities. The GAN1 gene was cloned and found to encode a 488-amino-acid polypeptide bearing no typical DNA binding domain. Gan1p is required for full expression of GLN1, GDH2 and also other nitrogen utilization genes, including GAP1, PUT4, MEP2 and GDH1. The extent to which Gan1p is required, however, varies according to the gene and to the nitrogen source available. We show that Gan1p is in fact involved in Gln3p- and Nil1p-dependent transcription. In the case of Gln3p-dependent transcription, the degree to which Gan1p is required appears to be gene specific. The contribution of Gan1p to gene expression is also influenced by the nitrogen status of the cell. We found that GAN1 is identical to ADA1, which encodes a component of the ADA/GCN5 co-activator complex. Ada1/Gan1p thus represents the first reported case of an accessory protein (a co-activator) linking the GATA-binding proteins Gln3p and Nil1p, mediating nitrogen-regulated transcription, to the basal transcription machinery.

journal_name

Mol Microbiol

journal_title

Molecular microbiology

authors

Soussi-Boudekou S,André B

doi

10.1046/j.1365-2958.1999.01187.x

subject

Has Abstract

pub_date

1999-02-01 00:00:00

pages

753-62

issue

3

eissn

0950-382X

issn

1365-2958

journal_volume

31

pub_type

杂志文章
  • Self-compartmentalized bacterial proteases and pathogenesis.

    abstract::Protein degradation is required for homeostasis of all living organisms. Self-compartmentalized ATP-dependent proteases are required for virulence of several pathogenic bacteria. Among the proteases implicated are ClpP and Lon, as well as the more recently identified bacterial proteasome. It is generally assumed that ...

    journal_title:Molecular microbiology

    pub_type: 杂志文章,评审

    doi:10.1111/j.1365-2958.2006.05128.x

    authors: Butler SM,Festa RA,Pearce MJ,Darwin KH

    更新日期:2006-05-01 00:00:00

  • Screening for synthetic lethal mutants in Escherichia coli and identification of EnvC (YibP) as a periplasmic septal ring factor with murein hydrolase activity.

    abstract::Bacterial cytokinesis is driven by the septal ring apparatus, the assembly of which in Escherichia coli is directed to mid-cell by the Min system. Despite suffering aberrant divisions at the poles, cells lacking the minCDE operon (Min(-)) have an almost normal growth rate. We developed a generally applicable screening...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.2004.04063.x

    authors: Bernhardt TG,de Boer PA

    更新日期:2004-06-01 00:00:00

  • Use of recombinase gene fusions to identify Vibrio cholerae genes induced during infection.

    abstract::A complete understanding of host-parasite interactions must necessarily include the identification and characterization of gene products expressed by both parties during the infectious process. We have developed a new screen to identify bacterial genes that are transcriptionally induced during infection of a host anim...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.1995.mmi_18040671.x

    authors: Camilli A,Mekalanos JJ

    更新日期:1995-11-01 00:00:00

  • Gene conversion: a mechanism for generation of heterogeneity in the tprK gene of Treponema pallidum during infection.

    abstract::The tprK gene sequence of Treponema pallidum subspecies pallidum (T. pallidum) is heterogeneous within and among isolates. Heterogeneity in the tprK open reading frame is localized in seven discrete variable (V) regions, and variability results from apparent base changes, insertions or deletions. The TprK V regions ar...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.2004.04086.x

    authors: Centurion-Lara A,LaFond RE,Hevner K,Godornes C,Molini BJ,Van Voorhis WC,Lukehart SA

    更新日期:2004-06-01 00:00:00

  • Biofilm formation by Bacillus subtilis: new insights into regulatory strategies and assembly mechanisms.

    abstract::Biofilm formation is a social behaviour that generates favourable conditions for sustained survival in the natural environment. For the Gram-positive bacterium Bacillus subtilis the process involves the differentiation of cell fate within an isogenic population and the production of communal goods that form the biofil...

    journal_title:Molecular microbiology

    pub_type: 杂志文章,评审

    doi:10.1111/mmi.12697

    authors: Cairns LS,Hobley L,Stanley-Wall NR

    更新日期:2014-08-01 00:00:00

  • Systematic deletion of Salmonella small RNA genes identifies CyaR, a conserved CRP-dependent riboregulator of OmpX synthesis.

    abstract::Post-transcriptional repression of porin synthesis has emerged as a major function of Hfq-dependent, small non-coding RNAs (sRNAs). Many enterobacteria express OmpX-like porins, a family of outer membrane proteins whose physiological roles and structural properties have been studied intensively. While regulatory sRNAs...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.2008.06189.x

    authors: Papenfort K,Pfeiffer V,Lucchini S,Sonawane A,Hinton JC,Vogel J

    更新日期:2008-05-01 00:00:00

  • Structure and substrate specificity of β-ketoacyl-acyl carrier protein synthase III from Acinetobacter baumannii.

    abstract::Originally annotated as the initiator of fatty acid synthesis (FAS), β-ketoacyl-acyl carrier protein synthase III (KAS III) is a unique component of the bacterial FAS system. Novel variants of KAS III have been identified that promote the de novo use of additional extracellular fatty acids by FAS. These KAS III varian...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/mmi.13950

    authors: Lee WC,Jeong MC,Lee Y,Kwak C,Lee JY,Kim Y

    更新日期:2018-06-01 00:00:00

  • The E protein of satellite phage P4 acts as an anti-repressor by binding to the C protein of helper phage P2.

    abstract::Temperate phage P2 has the capacity to function as a helper for the defective, unrelated, satellite phage P4. In the absence of a helper, P4 can either lysogenize its host or establish itself as a plasmid. For lytic growth, P4 requires the structural genes, packaging and lysis functions of the helper. P4 can get acces...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1046/j.1365-2958.1998.01132.x

    authors: Liu T,Renberg SK,Haggård-Ljungquist E

    更新日期:1998-12-01 00:00:00

  • Dynamics of cell wall components of Magnaporthe grisea during infectious structure development.

    abstract::Oligosaccharides derived from cell wall of fungal pathogens induce host primary immune responses. To understand fungal strategies circumventing the host plant immune responses, cell wall polysaccharide localization was investigated using fluorescent labels during infectious structure differentiation in the rice blast ...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.2009.06786.x

    authors: Fujikawa T,Kuga Y,Yano S,Yoshimi A,Tachiki T,Abe K,Nishimura M

    更新日期:2009-08-01 00:00:00

  • Structural analysis and demonstration of the 29 kDa antigen of pathogenic Entamoeba histolytica as the major accessible free thiol-containing surface protein.

    abstract::The 29 kDa protein of pathogenic Entamoeba histolytica is a cysteine-rich surface antigen which we recently characterized by cDNA sequencing and by using monoclonal antibodies which differentiated between pathogenic and non-pathogenic clinical isolates. To determine the structure and biochemical attributes of this pro...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.1993.tb01166.x

    authors: Flores BM,Batzer MA,Stein MA,Petersen C,Diedrich DL,Torian BE

    更新日期:1993-03-01 00:00:00

  • Phenotypic repertoire of the FNR regulatory network in Escherichia coli.

    abstract::The FNR protein in Escherichia coli is an O(2) sensor that modifies global gene expression to adapt the cell to anaerobic growth. Regulation of FNR involves continuous cycling of the protein between its active and inactive states under aerobic conditions without apparent function. This raises the question of what bene...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.2010.07437.x

    authors: Tolla DA,Savageau MA

    更新日期:2011-01-01 00:00:00

  • Repression of galP, the galactose transporter in Escherichia coli, requires the specific regulator of N-acetylglucosamine metabolism.

    abstract::Soupene et al. [J. Bacteriol. (2003) 185 5611-5626] made the unexpected observation that the presence of a mutation, in the gene for the N-acetylglucosamine repressor, nagC, increased the growth rate of Escherichia coli MG1655 on galactose, an unrelated sugar. We have found that NagC, binds to a single, high-affinity ...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.2008.06515.x

    authors: El Qaidi S,Allemand F,Oberto J,Plumbridge J

    更新日期:2009-01-01 00:00:00

  • Delayed nucleoid segregation in Escherichia coli.

    abstract::To study the role of cell division in the process of nucleoid segregation, we measured the DNA content of individual nucleoids in isogenic Escherichia coli cell division mutants by image cytometry. In pbpB(Ts) and ftsZ strains growing as filaments at 42 degrees C, nucleoids contained, on average, more than two chromos...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1046/j.1365-2958.1999.01535.x

    authors: Huls PG,Vischer NO,Woldringh CL

    更新日期:1999-09-01 00:00:00

  • Expression of Chlamydia trachomatis genes encoding products required for DNA synthesis and cell division during active versus persistent infection.

    abstract::During persistent infection, the intracellular bacterial pathogen Chlamydia trachomatis is viable but severely attenuates the production of new, infectious elementary bodies (EBs). To investigate the reasons for this lack of new EB output, we analysed the expression of chlamydial genes encoding products required for D...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1046/j.1365-2958.2001.02550.x

    authors: Gérard HC,Krausse-Opatz B,Wang Z,Rudy D,Rao JP,Zeidler H,Schumacher HR,Whittum-Hudson JA,Köhler L,Hudson AP

    更新日期:2001-08-01 00:00:00

  • Modulator protein RsbR regulates environmental signalling in the general stress pathway of Bacillus subtilis.

    abstract::Bacillus subtilis responds to signals of environmental and metabolic stress by inducing over 40 general stress genes under the control of the sigma B transcription factor. sigma B activity is regulated post-translationally by a multi-component network composed of two coupled partner-switching modules, RsbX-RsbS-RsbT a...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1046/j.1365-2958.1997.3631732.x

    authors: Akbar S,Kang CM,Gaidenko TA,Price CW

    更新日期:1997-05-01 00:00:00

  • Role of the ribosomal stalk components in the resistance of Aspergillus fumigatus to the sordarin antifungals.

    abstract::Aspergillus fumigatus, an important human nosocomial pathogen, is resistant to sordarin derivatives, a new family of antifungals that inhibit protein synthesis by interaction with the EF-2-ribosomal stalk complex. To explore the role of the A. fumigatus ribosome in the resistance mechanism, the fungal stalk proteins w...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1046/j.1365-2958.2002.02736.x

    authors: Santos C,Ballesta JP

    更新日期:2002-01-01 00:00:00

  • Recently differentiated epimastigotes from Trypanosoma cruzi are infective to the mammalian host.

    abstract::Trypanosoma cruzi, the etiologic agent of Chagas disease, has a complex life cycle in which four distinct developmental forms alternate between the insect vector and the mammalian host. It is assumed that replicating epimastigotes present in the insect gut are not infective to mammalian host, a paradigm corroborated b...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/mmi.13653

    authors: Kessler RL,Contreras VT,Marliére NP,Aparecida Guarneri A,Villamizar Silva LH,Mazzarotto GACA,Batista M,Soccol VT,Krieger MA,Probst CM

    更新日期:2017-06-01 00:00:00

  • Autoregulation of ZEB2 expression for zearalenone production in Fusarium graminearum.

    abstract::Several Fusarium species produce the polyketide mycotoxin zearalenone (ZEA), a causative agent of hyperestrogenic syndrome in animals that is often found in F. graminearum-infected cereals in temperate regions. The ZEA biosynthetic cluster genes PKS4, PKS13, ZEB1 and ZEB2 encode a reducing polyketide synthase, a non-r...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/mmi.13078

    authors: Park AR,Son H,Min K,Park J,Goo JH,Rhee S,Chae SK,Lee YW

    更新日期:2015-09-01 00:00:00

  • Mutational analysis of Escherichia coli sigma28 and its target promoters reveals recognition of a composite -10 region, comprised of an 'extended -10' motif and a core -10 element.

    abstract::Sigma28 controls the expression of flagella-related genes and is the most widely distributed alternative sigma factor, present in motile Gram-positive and Gram-negative bacteria. The distinguishing feature of sigma28 promoters is a long -10 region (GCCGATAA). Despite the fact that the upstream GC is highly conserved, ...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.2009.06691.x

    authors: Koo BM,Rhodius VA,Campbell EA,Gross CA

    更新日期:2009-05-01 00:00:00

  • Post-transcriptional cross-talk between pro- and anti-colonization pili biosynthesis systems in Vibrio cholerae.

    abstract::The pathogen Vibrio cholerae modulates the expression of many genes in order to transition from its environmental reservoir to its niche in the human host. Among these are genes encoding two related Type IV pili, the mannose-sensitive haemagglutinin (MSHA) pilus, which aids V. cholerae persistence in aquatic environme...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.2007.06091.x

    authors: Hsiao A,Toscano K,Zhu J

    更新日期:2008-02-01 00:00:00

  • Amplified expression of a transcriptional pattern formed during development of Anabaena.

    abstract::The cyanobacterium Anabaena responds to nitrogen deprivation by producing heterocysts, cells specialized for nitrogen fixation, at well-spaced intervals along its filaments. The gene hepA, required for heterocyst maturation, is expressed in response to nitrogen deprivation, prior to visible differentiation. A spatial ...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.1993.tb01135.x

    authors: Wolk CP,Elhai J,Kuritz T,Holland D

    更新日期:1993-02-01 00:00:00

  • Genetic and biochemical interactions between the bacterial replication initiator DnaA and the nucleoid-associated protein Rok in Bacillus subtilis.

    abstract::We identified interactions between the conserved bacterial replication initiator and transcription factor DnaA and the nucleoid-associated protein Rok of Bacillus subtilis. DnaA binds directly to clusters of DnaA boxes at the origin of replication and elsewhere, including the promoters of several DnaA-regulated genes....

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/mmi.13590

    authors: Seid CA,Smith JL,Grossman AD

    更新日期:2017-03-01 00:00:00

  • Atomic structure and specificity of bacterial periplasmic receptors for active transport and chemotaxis: variation of common themes.

    abstract::Crystallographic structure refinement at very high resolutions of a dozen periplasmic receptors has revealed that, though they have different sizes (26 to 60 kDa) and little sequence homology, they have high tertiary structure similarity. They consist of two distinct globular domains bisected by a cleft or groove wher...

    journal_title:Molecular microbiology

    pub_type: 杂志文章,评审

    doi:10.1111/j.1365-2958.1996.tb02484.x

    authors: Quiocho FA,Ledvina PS

    更新日期:1996-04-01 00:00:00

  • Cellobiohydrolase A (CbhA) from the cellulolytic bacterium Cellulomonas fimi is a beta-1,4-exocellobiohydrolase analogous to Trichoderma reesei CBH II.

    abstract::The gene cbhA from the cellulolytic bacterium Cellulomonas fimi encodes a protein of 872 amino acids designated cellobiohydrolase A (CbhA). Mature CbhA contains 832 amino acid residues and has a predicted molecular mass of 85,349 Da. It is composed of five domains: an N-terminal catalytic domain, three repeated sequen...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.1994.tb01030.x

    authors: Meinke A,Gilkes NR,Kwan E,Kilburn DG,Warren RA,Miller RC Jr

    更新日期:1994-05-01 00:00:00

  • Sulfur availability for Vibrio fischeri growth during symbiosis establishment depends on biogeography within the squid light organ.

    abstract::The fitness of host-associated microbes depends on their ability to access nutrients in vivo. Identifying these mechanisms is significant for understanding how microbes have evolved to fill specific ecological niches within a host. Vibrio fischeri is a bioluminescent bacterium that colonizes and proliferates within th...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/mmi.14177

    authors: Wasilko NP,Larios-Valencia J,Steingard CH,Nunez BM,Verma SC,Miyashiro T

    更新日期:2019-03-01 00:00:00

  • Roles for both FtsA and the FtsBLQ subcomplex in FtsN-stimulated cell constriction in Escherichia coli.

    abstract::Escherichia coli FtsN is a bitopic membrane protein that is essential for triggering active cell constriction. A small periplasmic subdomain ((E) FtsN) is required and sufficient for function, but its mechanism of action is unclear. We isolated extragenic (E) FtsN*-suppressing mutations that restore division in cells ...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/mmi.12906

    authors: Liu B,Persons L,Lee L,de Boer PA

    更新日期:2015-03-01 00:00:00

  • Antibiotic-induced ribosomal assembly defects result from changes in the synthesis of ribosomal proteins.

    abstract::Inhibitors of protein synthesis cause defects in the assembly of ribosomal subunits. In response to treatment with the antibiotics erythromycin or chloramphenicol, precursors of both large and small ribosomal subunits accumulate. We have used a pulse-labelling approach to demonstrate that the accumulating subribosomal...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.2011.07555.x

    authors: Siibak T,Peil L,Dönhöfer A,Tats A,Remm M,Wilson DN,Tenson T,Remme J

    更新日期:2011-04-01 00:00:00

  • The virulence protein Yop5 of Yersinia pseudotuberculosis is regulated at transcriptional level by plasmid-plB1 -encoded trans-acting elements controlled by temperature and calcium.

    abstract::The DNA sequence of the structural gene (yopE) of one of the Yersinia pseudotuberculosis virulence plas-mid-plB1-encoded proteins, Yop5, is presented. The deduced protein showed a molecular weight of 22971 Daltons. A specific mutant, having a kanamycin-resistance fragment inserted within the yopE gene was no longer vi...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.1988.tb00013.x

    authors: Forsberg A,Wolf-Watz H

    更新日期:1988-01-01 00:00:00

  • Multifunctional enzymes from reduced genomes - model proteins for simple primordial metabolism?

    abstract::Billions of years of evolution have yielded today's complex metabolic networks driven by efficient and highly specialized enzymes. In contrast, the metabolism of the earliest cellular life forms was likely much simpler with only a few enzymes of comparatively low activity. It has been speculated that these early enzym...

    journal_title:Molecular microbiology

    pub_type: 社论

    doi:10.1111/mmi.13742

    authors: Seelig B

    更新日期:2017-08-01 00:00:00

  • Molecular analysis of the psa permease complex of Streptococcus pneumoniae.

    abstract::The psaBCA locus of Streptococcus pneumoniae encodes a putative ABC Mn2+-permease complex. Downstream of the operon is psaD, which may be co-transcribed and encodes a thiol peroxidase. Previously, there has been discordance concerning the phenotypic impact of mutations in the psa locus, resolution of which has been co...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.2004.04164.x

    authors: McAllister LJ,Tseng HJ,Ogunniyi AD,Jennings MP,McEwan AG,Paton JC

    更新日期:2004-08-01 00:00:00