PKD1 interacts with PKD2 through a probable coiled-coil domain.

Abstract:

:Autosomal dominant polycystic kidney disease (ADPKD) describes a group of at least three genetically distinct disorders with almost identical clinical features that collectively affects 1:1,000 of the population. Affected individuals typically develop large cystic kidneys and approximately one half develop end-stage renal disease by their seventh decade. It has been suggested that the diseases result from defects in interactive factors involved in a common pathway. The recent discovery of the genes for the two most common forms of ADPKD has provided an opportunity to test this hypothesis. We describe a previously unrecognized coiled-coil domain within the C terminus of the PKD1 gene product, polycystin, and demonstrate that it binds specifically to the C terminus of PKD2. Homotypic interactions involving the C terminus of each are also demonstrated. We show that naturally occurring pathogenic mutations of PKD1 and PKD2 disrupt their associations. We have characterized the structural basis of their heterotypic interactions by deletional and site-specific mutagenesis. Our data suggest that PKD1 and PKD2 associate physically in vivo and may be partners of a common signalling cascade involved in tubular morphogenesis.

journal_name

Nat Genet

journal_title

Nature genetics

authors

Qian F,Germino FJ,Cai Y,Zhang X,Somlo S,Germino GG

doi

10.1038/ng0697-179

subject

Has Abstract

pub_date

1997-06-01 00:00:00

pages

179-83

issue

2

eissn

1061-4036

issn

1546-1718

journal_volume

16

pub_type

杂志文章
  • A male-female bias in type 1 diabetes and linkage to chromosome Xp in MHC HLA-DR3-positive patients.

    abstract::It is generally assumed that the male:female (M:F) ratio in patients with type 1 (insulin-dependent) diabetes mellitus (IDDM) is 1. A recent survey, however, revealed that high incidence countries (mainly European) have a high M:F ratio and low incidence ones (Asian and African) have a low M:F ratio. We have now analy...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/995

    authors: Cucca F,Goy JV,Kawaguchi Y,Esposito L,Merriman ME,Wilson AJ,Cordell HJ,Bain SC,Todd JA

    更新日期:1998-07-01 00:00:00

  • The gene encoding phosphodiesterase 4D confers risk of ischemic stroke.

    abstract::We previously mapped susceptibility to stroke to chromosome 5q12. Here we finely mapped this locus and tested it for association with stroke. We found the strongest association in the gene encoding phosphodiesterase 4D (PDE4D), especially for carotid and cardiogenic stroke, the forms of stroke related to atheroscleros...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng1245

    authors: Gretarsdottir S,Thorleifsson G,Reynisdottir ST,Manolescu A,Jonsdottir S,Jonsdottir T,Gudmundsdottir T,Bjarnadottir SM,Einarsson OB,Gudjonsdottir HM,Hawkins M,Gudmundsson G,Gudmundsdottir H,Andrason H,Gudmundsdottir AS,Sigur

    更新日期:2003-10-01 00:00:00

  • Stochastic yet biased expression of multiple Dscam splice variants by individual cells.

    abstract::The Drosophila melanogaster gene Dscam is essential for axon guidance and has 38,016 possible alternative splice forms. This diversity can potentially be used to distinguish cells. We analyzed the Dscam mRNA isoforms expressed by different cell types and individual cells. The choice of splice variants expressed is reg...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng1299

    authors: Neves G,Zucker J,Daly M,Chess A

    更新日期:2004-03-01 00:00:00

  • A specific requirement for PDGF-C in palate formation and PDGFR-alpha signaling.

    abstract::PDGF-C is a member of the platelet-derived growth factor (PDGF) family, which signals through PDGF receptor (PDGFR) alphaalpha and alphabeta dimers. Here we show that Pdgfc(-/-) mice die in the perinatal period owing to feeding and respiratory difficulties associated with a complete cleft of the secondary palate. This...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng1415

    authors: Ding H,Wu X,Boström H,Kim I,Wong N,Tsoi B,O'Rourke M,Koh GY,Soriano P,Betsholtz C,Hart TC,Marazita ML,Field LL,Tam PP,Nagy A

    更新日期:2004-10-01 00:00:00

  • Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.

    abstract::Although several lung cancer susceptibility loci have been identified, much of the heritability for lung cancer remains unexplained. Here 14,803 cases and 12,262 controls of European descent were genotyped on the OncoArray and combined with existing data for an aggregated genome-wide association study (GWAS) analysis ...

    journal_title:Nature genetics

    pub_type: 杂志文章,meta分析

    doi:10.1038/ng.3892

    authors: McKay JD,Hung RJ,Han Y,Zong X,Carreras-Torres R,Christiani DC,Caporaso NE,Johansson M,Xiao X,Li Y,Byun J,Dunning A,Pooley KA,Qian DC,Ji X,Liu G,Timofeeva MN,Bojesen SE,Wu X,Le Marchand L,Albanes D,Bickeböller H

    更新日期:2017-07-01 00:00:00

  • A new statistic and its power to infer membership in a genome-wide association study using genotype frequencies.

    abstract::Aggregate results from genome-wide association studies (GWAS), such as genotype frequencies for cases and controls, were until recently often made available on public websites because they were thought to disclose negligible information concerning an individual's participation in a study. Homer et al. recently suggest...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.455

    authors: Jacobs KB,Yeager M,Wacholder S,Craig D,Kraft P,Hunter DJ,Paschal J,Manolio TA,Tucker M,Hoover RN,Thomas GD,Chanock SJ,Chatterjee N

    更新日期:2009-11-01 00:00:00

  • Mutation of DNASE1 in people with systemic lupus erythematosus.

    abstract::Systemic lupus erythematosus (SLE) is a highly prevalent human autoimmune diseases that causes progressive glomerulonephritis, arthritis and an erythematoid rash. Mice deficient in deoxyribonuclease I (Dnase1) develop an SLE-like syndrome. Here we describe two patients with a heterozygous nonsense mutation in exon 2 o...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/91070

    authors: Yasutomo K,Horiuchi T,Kagami S,Tsukamoto H,Hashimura C,Urushihara M,Kuroda Y

    更新日期:2001-08-01 00:00:00

  • Sixteen diverse laboratory mouse reference genomes define strain-specific haplotypes and novel functional loci.

    abstract::We report full-length draft de novo genome assemblies for 16 widely used inbred mouse strains and find extensive strain-specific haplotype variation. We identify and characterize 2,567 regions on the current mouse reference genome exhibiting the greatest sequence diversity. These regions are enriched for genes involve...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/s41588-018-0223-8

    authors: Lilue J,Doran AG,Fiddes IT,Abrudan M,Armstrong J,Bennett R,Chow W,Collins J,Collins S,Czechanski A,Danecek P,Diekhans M,Dolle DD,Dunn M,Durbin R,Earl D,Ferguson-Smith A,Flicek P,Flint J,Frankish A,Fu B,Gerstein

    更新日期:2018-11-01 00:00:00

  • MLL4-associated condensates counterbalance Polycomb-mediated nuclear mechanical stress in Kabuki syndrome.

    abstract::The genetic elements required to tune gene expression are partitioned in active and repressive nuclear condensates. Chromatin compartments include transcriptional clusters whose dynamic establishment and functioning depend on multivalent interactions occurring among transcription factors, cofactors and basal transcrip...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/s41588-020-00724-8

    authors: Fasciani A,D'Annunzio S,Poli V,Fagnocchi L,Beyes S,Michelatti D,Corazza F,Antonelli L,Gregoretti F,Oliva G,Belli R,Peroni D,Domenici E,Zambrano S,Intartaglia D,Settembre C,Conte I,Testi C,Vergyris P,Ruocco G,Zippo

    更新日期:2020-12-01 00:00:00

  • G-quadruplex structures mark human regulatory chromatin.

    abstract::G-quadruplex (G4) structural motifs have been linked to transcription, replication and genome instability and are implicated in cancer and other diseases. However, it is crucial to demonstrate the bona fide formation of G4 structures within an endogenous chromatin context. Herein we address this through the developmen...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.3662

    authors: Hänsel-Hertsch R,Beraldi D,Lensing SV,Marsico G,Zyner K,Parry A,Di Antonio M,Pike J,Kimura H,Narita M,Tannahill D,Balasubramanian S

    更新日期:2016-10-01 00:00:00

  • Mutations in IRX5 impair craniofacial development and germ cell migration via SDF1.

    abstract::Using homozygosity mapping and locus resequencing, we found that alterations in the homeodomain of the IRX5 transcription factor cause a recessive congenital disorder affecting face, brain, blood, heart, bone and gonad development. We found through in vivo modeling in Xenopus laevis embryos that Irx5 modulates the mig...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.2259

    authors: Bonnard C,Strobl AC,Shboul M,Lee H,Merriman B,Nelson SF,Ababneh OH,Uz E,Güran T,Kayserili H,Hamamy H,Reversade B

    更新日期:2012-05-13 00:00:00

  • Genome-wide association yields new sequence variants at seven loci that associate with measures of obesity.

    abstract::Obesity results from the interaction of genetic and environmental factors. To search for sequence variants that affect variation in two common measures of obesity, weight and body mass index (BMI), both of which are highly heritable, we performed a genome-wide association (GWA) study with 305,846 SNPs typed in 25,344 ...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.274

    authors: Thorleifsson G,Walters GB,Gudbjartsson DF,Steinthorsdottir V,Sulem P,Helgadottir A,Styrkarsdottir U,Gretarsdottir S,Thorlacius S,Jonsdottir I,Jonsdottir T,Olafsdottir EJ,Olafsdottir GH,Jonsson T,Jonsson F,Borch-Johnsen K,

    更新日期:2009-01-01 00:00:00

  • Mutations in the DNA methyltransferase gene DNMT3A cause an overgrowth syndrome with intellectual disability.

    abstract::Overgrowth disorders are a heterogeneous group of conditions characterized by increased growth parameters and other variable clinical features such as intellectual disability and facial dysmorphism. To identify new causes of human overgrowth, we performed exome sequencing in ten proband-parent trios and detected two d...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.2917

    authors: Tatton-Brown K,Seal S,Ruark E,Harmer J,Ramsay E,Del Vecchio Duarte S,Zachariou A,Hanks S,O'Brien E,Aksglaede L,Baralle D,Dabir T,Gener B,Goudie D,Homfray T,Kumar A,Pilz DT,Selicorni A,Temple IK,Van Maldergem L,Yac

    更新日期:2014-04-01 00:00:00

  • Mutations in the 180-kD bullous pemphigoid antigen (BPAG2), a hemidesmosomal transmembrane collagen (COL17A1), in generalized atrophic benign epidermolysis bullosa.

    abstract::Junctional epidermolysis bullosa (JEB) is a heterogeneous autosomal recessively inherited blistering skin disorder associated with fragility at the dermal-epidermal junction. Characteristic ultrastructural findings in JEB are abnormalities in the hemidesmosome-anchoring filament complexes. These focal attachment struc...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng0995-83

    authors: McGrath JA,Gatalica B,Christiano AM,Li K,Owaribe K,McMillan JR,Eady RA,Uitto J

    更新日期:1995-09-01 00:00:00

  • An evolutionary framework for measuring epigenomic information and estimating cell-type-specific fitness consequences.

    abstract::Here we ask the question "How much information do epigenomic datasets provide about human genomic function?" We consider nine epigenomic features across 115 cell types and measure information about function as a reduction in entropy under a probabilistic evolutionary model fitted to human and nonhuman primate genomes....

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/s41588-018-0300-z

    authors: Gulko B,Siepel A

    更新日期:2019-02-01 00:00:00

  • Genetic and epigenetic incompatibilities underlie hybrid dysgenesis in Peromyscus.

    abstract::Crosses between the two North American rodent species Peromyscus polionotus (PO) and Peromyscus maniculatus (BW) yield parent-of-origin effects on both embryonic and placental growth. The two species are approximately the same size, but a female BW crossed with a male PO produces offspring that are smaller than either...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/75518

    authors: Vrana PB,Fossella JA,Matteson P,del Rio T,O'Neill MJ,Tilghman SM

    更新日期:2000-05-01 00:00:00

  • Genomic features of bacterial adaptation to plants.

    abstract::Plants intimately associate with diverse bacteria. Plant-associated bacteria have ostensibly evolved genes that enable them to adapt to plant environments. However, the identities of such genes are mostly unknown, and their functions are poorly characterized. We sequenced 484 genomes of bacterial isolates from roots o...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/s41588-017-0012-9

    authors: Levy A,Salas Gonzalez I,Mittelviefhaus M,Clingenpeel S,Herrera Paredes S,Miao J,Wang K,Devescovi G,Stillman K,Monteiro F,Rangel Alvarez B,Lundberg DS,Lu TY,Lebeis S,Jin Z,McDonald M,Klein AP,Feltcher ME,Rio TG,Grant

    更新日期:2017-12-18 00:00:00

  • Testing for genetic associations in arbitrarily structured populations.

    abstract::We present a new statistical test of association between a trait and genetic markers, which we theoretically and practically prove to be robust to arbitrarily complex population structure. The statistical test involves a set of parameters that can be directly estimated from large-scale genotyping data, such as those m...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.3244

    authors: Song M,Hao W,Storey JD

    更新日期:2015-05-01 00:00:00

  • Common variants at 10p12.31, 10q21.1 and 13q12.13 are associated with sporadic pituitary adenoma.

    abstract::Pituitary adenoma is one of the most common intracranial neoplasms, and its genetic basis remains largely unknown. To identify genetic susceptibility loci for sporadic pituitary adenoma, we performed a three-stage genome-wide association study (GWAS) in the Han Chinese population. We first analyzed genome-wide SNP dat...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.3322

    authors: Ye Z,Li Z,Wang Y,Mao Y,Shen M,Zhang Q,Li S,Zhou L,Shou X,Chen J,Song Z,Ma Z,Zhang Z,Li Y,Ye H,Huang C,Wang T,He W,Zhang Y,Xie R,Qiao N,Qiu H,Huang S,Wang M,Shen J,Wen Z,Li W,Liu K,Zhou J,Wang L,

    更新日期:2015-07-01 00:00:00

  • Mutations in CEP290, which encodes a centrosomal protein, cause pleiotropic forms of Joubert syndrome.

    abstract::Joubert syndrome-related disorders (JSRD) are a group of syndromes sharing the neuroradiological features of cerebellar vermis hypoplasia and a peculiar brainstem malformation known as the 'molar tooth sign'. We identified mutations in the CEP290 gene in five families with variable neurological, retinal and renal mani...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng1805

    authors: Valente EM,Silhavy JL,Brancati F,Barrano G,Krishnaswami SR,Castori M,Lancaster MA,Boltshauser E,Boccone L,Al-Gazali L,Fazzi E,Signorini S,Louie CM,Bellacchio E,International Joubert Syndrome Related Disorders Study Group.,B

    更新日期:2006-06-01 00:00:00

  • Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.

    abstract::Volumetric variations of the human brain are heritable and are associated with many brain-related complex traits. Here we performed genome-wide association studies (GWAS) of 101 brain volumetric phenotypes using the UK Biobank sample including 19,629 participants. GWAS identified 365 independent genetic variants excee...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/s41588-019-0516-6

    authors: Zhao B,Luo T,Li T,Li Y,Zhang J,Shan Y,Wang X,Yang L,Zhou F,Zhu Z,Alzheimer’s Disease Neuroimaging Initiative.,Pediatric Imaging, Neurocognition and Genetics.,Zhu H

    更新日期:2019-11-01 00:00:00

  • Genome-wide association study of PR interval.

    abstract::The electrocardiographic PR interval (or PQ interval) reflects atrial and atrioventricular nodal conduction, disturbances of which increase risk of atrial fibrillation. We report a meta-analysis of genome-wide association studies for PR interval from seven population-based European studies in the CHARGE Consortium: AG...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.517

    authors: Pfeufer A,van Noord C,Marciante KD,Arking DE,Larson MG,Smith AV,Tarasov KV,Müller M,Sotoodehnia N,Sinner MF,Verwoert GC,Li M,Kao WH,Köttgen A,Coresh J,Bis JC,Psaty BM,Rice K,Rotter JI,Rivadeneira F,Hofman A,Kors

    更新日期:2010-02-01 00:00:00

  • Renal disease susceptibility and hypertension are under independent genetic control in the fawn-hooded rat.

    abstract::Hypertension, diabetes and hyperlipidemia are risk factors for life-threatening complications such as end-stage renal disease, coronary artery disease and stroke. Why some patients develop complications is unclear, but only susceptibility genes may be involved. To test this notion, we studied crosses involving the faw...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng0196-44

    authors: Brown DM,Provoost AP,Daly MJ,Lander ES,Jacob HJ

    更新日期:1996-01-01 00:00:00

  • Genomic privacy and limits of individual detection in a pool.

    abstract::Recent studies have demonstrated that statistical methods can be used to detect the presence of a single individual within a study group based on summary data reported from genome-wide association studies (GWAS). We present an analytical and empirical study of the statistical power of such methods. We thereby aim to p...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.436

    authors: Sankararaman S,Obozinski G,Jordan MI,Halperin E

    更新日期:2009-09-01 00:00:00

  • Genome-wide association study of flowering time and grain yield traits in a worldwide collection of rice germplasm.

    abstract::A high-density haplotype map recently enabled a genome-wide association study (GWAS) in a population of indica subspecies of Chinese rice landraces. Here we extend this methodology to a larger and more diverse sample of 950 worldwide rice varieties, including the Oryza sativa indica and Oryza sativa japonica subspecie...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.1018

    authors: Huang X,Zhao Y,Wei X,Li C,Wang A,Zhao Q,Li W,Guo Y,Deng L,Zhu C,Fan D,Lu Y,Weng Q,Liu K,Zhou T,Jing Y,Si L,Dong G,Huang T,Lu T,Feng Q,Qian Q,Li J,Han B

    更新日期:2011-12-04 00:00:00

  • Contrasting evolutionary genome dynamics between domesticated and wild yeasts.

    abstract::Structural rearrangements have long been recognized as an important source of genetic variation, with implications in phenotypic diversity and disease, yet their detailed evolutionary dynamics remain elusive. Here we use long-read sequencing to generate end-to-end genome assemblies for 12 strains representing major su...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.3847

    authors: Yue JX,Li J,Aigrain L,Hallin J,Persson K,Oliver K,Bergström A,Coupland P,Warringer J,Lagomarsino MC,Fischer G,Durbin R,Liti G

    更新日期:2017-06-01 00:00:00

  • Recurrent somatic mutations in ACVR1 in pediatric midline high-grade astrocytoma.

    abstract::Pediatric midline high-grade astrocytomas (mHGAs) are incurable with few treatment targets identified. Most tumors harbor mutations encoding p.Lys27Met in histone H3 variants. In 40 treatment-naive mHGAs, 39 analyzed by whole-exome sequencing, we find additional somatic mutations specific to tumor location. Gain-of-fu...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.2950

    authors: Fontebasso AM,Papillon-Cavanagh S,Schwartzentruber J,Nikbakht H,Gerges N,Fiset PO,Bechet D,Faury D,De Jay N,Ramkissoon LA,Corcoran A,Jones DT,Sturm D,Johann P,Tomita T,Goldman S,Nagib M,Bendel A,Goumnerova L,Bowers

    更新日期:2014-05-01 00:00:00

  • SGS1, the Saccharomyces cerevisiae homologue of BLM and WRN, suppresses genome instability and homeologous recombination.

    abstract::The Escherichia coli gene recQ was identified as a RecF recombination pathway gene. The gene SGS1, encoding the only RecQ-like DNA helicase in Saccharomyces cerevisiae, was identified by mutations that suppress the top3 slow-growth phenotype. Relatively little is known about the function of Sgs1p because single mutati...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/83673

    authors: Myung K,Datta A,Chen C,Kolodner RD

    更新日期:2001-01-01 00:00:00

  • ITPKC functional polymorphism associated with Kawasaki disease susceptibility and formation of coronary artery aneurysms.

    abstract::Kawasaki disease is a pediatric systemic vasculitis of unknown etiology for which a genetic influence is suspected. We identified a functional SNP (itpkc_3) in the inositol 1,4,5-trisphosphate 3-kinase C (ITPKC) gene on chromosome 19q13.2 that is significantly associated with Kawasaki disease susceptibility and also w...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.2007.59

    authors: Onouchi Y,Gunji T,Burns JC,Shimizu C,Newburger JW,Yashiro M,Nakamura Y,Yanagawa H,Wakui K,Fukushima Y,Kishi F,Hamamoto K,Terai M,Sato Y,Ouchi K,Saji T,Nariai A,Kaburagi Y,Yoshikawa T,Suzuki K,Tanaka T,Nagai T,

    更新日期:2008-01-01 00:00:00

  • Cloning of the putative tumour suppressor gene for hereditary multiple exostoses (EXT1).

    abstract::Hereditary multiple exostoses is an autosomal dominant disorder that is characterized by short stature and multiple, benign bone tumours. In a majority of families, the genetic defect (EXT1) is linked to the Langer-Giedion syndrome chromosomal region in 8q24.1. From this region we have cloned and characterized a cDNA ...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng1095-137

    authors: Ahn J,Lüdecke HJ,Lindow S,Horton WA,Lee B,Wagner MJ,Horsthemke B,Wells DE

    更新日期:1995-10-01 00:00:00