Abstract:
:A major limitation hindering the widespread use of synthetic phages in medical and industrial settings is the lack of an efficient phage-engineering platform. Classical T4 phage engineering and several newly proposed methods are often inefficient and time consuming and consequently, only able to produce an inconsistent range of genomic editing rates between 0.03-3%. Here, we review and present new understandings of the CRISPR/Cas9 assisted genome engineering technique that significantly improves the genomic editing rate of T4 phages. Our results indicate that crRNAs selection is a major rate limiting factor in T4 phage engineering via CRISPR/Cas9. We were able to achieve an editing rate of > 99% for multiple genes that functionalizes the phages for further applications. We envision that this improved phage-engineering platform will accelerate the fields of individualized phage therapy, biocontrol, and rapid diagnostics.
journal_name
Sci Repjournal_title
Scientific reportsauthors
Duong MM,Carmody CM,Ma Q,Peters JE,Nugen SRdoi
10.1038/s41598-020-75426-6subject
Has Abstractpub_date
2020-10-26 00:00:00pages
18229issue
1issn
2045-2322pii
10.1038/s41598-020-75426-6journal_volume
10pub_type
杂志文章abstract::Stemborers (Busseola fusca, Sesamia calamistis and Chilo partellus), the fall armyworm (Spodoptera frugiperda) and associated parasitoids constitute an interacting system in maize fields in Kenya. This work aims at developing and evaluating models that represent the evolution of those interactions by applying system t...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-020-79553-y
更新日期:2021-01-14 00:00:00
abstract::Baited remote underwater video cameras were deployed in the Eastern Canadian Arctic, for the purpose of estimating local densities of the long-lived Greenland shark within five deep-water, data-poor regions of interest for fisheries development and marine conservation in Nunavut, Canada. A total of 31 camera deploymen...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-017-19115-x
更新日期:2018-01-17 00:00:00
abstract::The DNA methyltransferase DNMT3A R882H mutation is observed in 25% of all AML patients. DNMT3A is active as tetramer and the R882H mutation is located in one of the subunit/subunit interfaces. Previous work has reported that formation of mixed wildtype/R882H complexes leads to a strong loss of catalytic activity obser...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-018-31635-8
更新日期:2018-09-05 00:00:00
abstract::The formation of amyloid-β plaques is one of the hallmarks of Alzheimer's disease. The presence of an amphiphatic cell membrane can accelerate the formation of amyloid-β aggregates, making it a potential druggable target to delay the progression of Alzheimer's disease. We have prepared unsaturated anionic membranes ma...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-018-30431-8
更新日期:2018-08-17 00:00:00
abstract::Propionibacterium freudenreichii, a dairy starter, can reach a population of almost 109 propionibacteria per gram in Swiss-type cheese at the time of consumption. Also consumed as a probiotic, it displays strain-dependent anti-inflammatory properties mediated by surface proteins that induce IL-10 in leukocytes. We sel...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep46409
更新日期:2017-04-13 00:00:00
abstract::Hearing impairment is one of the most common sensory deficits in humans. Hearing aids are helpful to patients but can have poor sound quality or transmission due to insufficient output or acoustic feedback, such as for high frequencies. Implantable devices partially overcome these issues but require surgery with limit...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-019-40860-8
更新日期:2019-03-12 00:00:00
abstract::Microstructures in nature are ultrafine and ordered in biological roles, which have attracted material scientists. Spirulina forms three-dimensional helical microstructure, one of remarkable features in nature beyond our current processing technology such as lithography in terms of mass-productivity and structural mul...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep04919
更新日期:2014-05-12 00:00:00
abstract::Although the perception of faces depends on low-level neuronal processes, it is also affected by high-level social processes. Faces from a social in-group, such as people of a similar age, receive more in-depth processing and are processed holistically. To explore whether own-age biases affect subconscious face percep...
journal_title:Scientific reports
pub_type: 临床试验,杂志文章
doi:10.1038/s41598-018-31129-7
更新日期:2018-08-23 00:00:00
abstract::Ras mutations (e.g., occur in K-Ras, N-Ras, and H-Ras) are one of the most desirable and promising drug targets in chemotherapy treatments for cancer. However, there are still no approved drugs directly targeting mutated Ras. In 2017, an artificial cyclic peptide, KRpep-2d, was discovered as the first selective inhibi...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-020-78712-5
更新日期:2020-12-10 00:00:00
abstract::Protein malonylation, a reversible post-translational modification of lysine residues, is associated with various biological functions, such as cellular regulation and pathogenesis. In proteomics, to improve our understanding of the mechanisms of malonylation at the molecular level, the identification of malonylation ...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-020-67384-w
更新日期:2020-06-29 00:00:00
abstract::We have developed a plasma cell treatment device called Plasma-on-Chip that enables the real-time monitoring of a single cell culture during plasma treatment. The device consists of three parts: 1) microwells for cell culture, 2) a microplasma device for generating reactive oxygen and nitrogen species (RONS) for use i...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep41953
更新日期:2017-02-08 00:00:00
abstract::Previous experimental studies discovered universal growth of chains and nanowires of various chemical elements on a corrugated molecular network of Cu3N on the Cu(110). Herein, performing combined ab initio and quantum Hamiltonian studies we demonstrate that such chains can be used for a fast spin switching and entang...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-017-02972-x
更新日期:2017-06-05 00:00:00
abstract::Anisotropic Fe3O4 nanoparticle and a series of its graphene composites have been successfully prepared as high-frequency absorbers. The crystal structure, morphology and magnetic property of the samples were detailed characterized through X-ray diffractometer (XRD), transmission electron microscopy (TEM) and vibrating...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep25075
更新日期:2016-05-04 00:00:00
abstract::Biomarkers are measurable changes associated with the disease. Urine can reflect the changes of the body while blood is under control of the homeostatic mechanisms; thus, urine is considered an important source for early and sensitive disease biomarker discovery. A comprehensive profile of the urinary proteome will pr...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-017-03226-6
更新日期:2017-06-08 00:00:00
abstract::Diets high in advanced glycation end products (AGEs) are thought to be detrimental to cardiovascular health. However, there remains uncertainty about the beneficial effect of a low AGE diet on cardiovascular risk factors and inflammatory markers in overweight individuals. We thus performed a randomised, double blind, ...
journal_title:Scientific reports
pub_type: 临床试验,杂志文章,随机对照试验
doi:10.1038/s41598-017-04214-6
更新日期:2017-06-23 00:00:00
abstract::The Early Cretaceous Greater Ontong Java Event in the Pacific Ocean may have covered ca. 1% of the Earth's surface with volcanism. It has puzzled scientists trying to explain its origin by several mechanisms possible on Earth, leading others to propose an extraterrestrial trigger to explain this event. A large oceanic...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep00268
更新日期:2012-01-01 00:00:00
abstract::PP2A is a master controller of multiple inflammatory signaling pathways. It is a target in asthma; however the molecular mechanisms by which PP2A controls inflammation warrant further investigation. In A549 lung epithelial cells in vitro we show that inhibition of basal PP2A activity by okadaic acid (OA) releases rest...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep10063
更新日期:2015-05-18 00:00:00
abstract::We characterized the microstructural response of the myocardium to cardiovascular disease using diffusion tensor imaging (DTI) and performed histological validation by intact, un-sectioned, three-dimensional (3D) histology using a tissue-clearing technique. The approach was validated in normal (n = 7) and ischemic (n ...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-018-24622-6
更新日期:2018-04-27 00:00:00
abstract::Influence of polyethylene glycol (PEG) mediated osmotic stress on reactive oxygen species (ROS) scavenging machinery of Chinese potato (Solenostemon rotundifolius (Poir.) J. K. Morton) was investigated. Five genotypes of Chinese potato were raised in Murashige and Skoog (MS) basal medium containing 6-benzylaminopurine...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-020-62317-z
更新日期:2020-03-25 00:00:00
abstract::Cancer dissemination is initiated by the movement of cells into the vasculature which has been reported to be triggered by EMT (epithelial to mesenchymal transition). Cellular dissemination also requires proteases that remodel the extracellular matrix. The protease, plasmin is a prominent player in matrix remodeling a...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-018-32433-y
更新日期:2018-09-20 00:00:00
abstract::Patients with schizophrenia have a higher risk for cardiovascular disease (CVD) than the general population. Research has suggested that autonomic imbalance is a common pathway to increased morbidity and mortality for CVD. Heart rate variability (HRV) analysis is a non-invasive method that assesses autonomic imbalance...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep07394
更新日期:2014-12-09 00:00:00
abstract::Hepatocellular carcinoma is a common type of malignancy with a poor prognosis. Identification and utilisation of markers for monitoring and diagnosis are urgently needed. Alpha-fetoprotein (AFP) and Protein Induced by Vitamin K Absence or Antagonist-II (PIVKA-II) have been proved to be efficient biomarkers for hepatit...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-020-70241-5
更新日期:2020-08-11 00:00:00
abstract::We report the counterintuitive mechanism of increasing boiling heat transfer by incorporating low-conductivity materials at the interface between the surface and fluid. By embedding an array of non-conductive lines into a high-conductivity substrate, in-plane variations in the local surface temperature are created. Du...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep13145
更新日期:2015-08-18 00:00:00
abstract::There is a need for noninvasive repeatable biomarkers to detect early cancer treatment response and spare non-responders unnecessary morbidities and costs. Here, we introduce three-dimensional (3D) dynamic contrast enhanced ultrasound (DCE-US) perfusion map characterization as inexpensive, bedside and longitudinal ind...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-020-63810-1
更新日期:2020-04-24 00:00:00
abstract::Echovirus 11 (E-11) is one of the most frequently isolated enteroviruses causing meningitis and other diseases such as hand, foot, and mouth disease (HFMD) and acute flaccid paralysis (AFP). Fifty-nine newly determined E-11 VP1 sequences from the China AFP and HFMD surveillance network and 500 E-11 VP1 sequences obtai...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-019-46870-w
更新日期:2019-07-22 00:00:00
abstract::Pro-inflammatory and amyloidogenic S100A9 protein is an important contributor to Alzheimer's disease (AD) pathology. Traumatic brain injury (TBI) is viewed as a precursor state for AD. Here we have shown that S100A9-driven amyloid-neuroinflammatory cascade was initiated in TBI and may serve as a mechanistic link betwe...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-018-31141-x
更新日期:2018-08-27 00:00:00
abstract::To better understand the effects of transient thermal stress in an aquatic insect, we first identified static temperatures associated with fitness deficits, and then reared larvae from egg hatch to adulthood under diurnally variable regimens including daily forays into deleterious temperatures. We sampled mature larva...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-020-75064-y
更新日期:2020-11-05 00:00:00
abstract::We have previously reported that the sodium potassium adenosine triphosphatase (Na/K-ATPase) can effect the amplification of reactive oxygen species. In this study, we examined whether attenuation of oxidant stress by antagonism of Na/K-ATPase oxidant amplification might ameliorate experimental uremic cardiomyopathy i...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep34592
更新日期:2016-10-04 00:00:00
abstract::Green microalgae contain many active pigments such as carotenoids having antioxidant and protective activity on human cells. Here we investigate the biological activity of an ethanol/water extract of the marine green microalga Tetraselmis suecica containing high levels of carotenoids such as the xanthophylls lutein, v...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep41215
更新日期:2017-01-24 00:00:00
abstract::Mechanical interlocking is widely applied in industry and general lives of human beings. In this work, we realized the control of locking or sliding states of cotton fibers on the metal surfaces with slightly different textures through traditional machining. Three types of sliding states, i.e., locking, one-way slidin...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep25403
更新日期:2016-05-09 00:00:00