Abstract:
:Conventional "bulk" PCR often yields inefficient and nonuniform amplification of complex templates in DNA libraries, introducing unwanted biases. Amplification of single DNA molecules encapsulated in a myriad of emulsion droplets (emulsion PCR, ePCR) allows the mitigation of this problem. Different ePCR regimes were experimentally analyzed to identify the most robust techniques for enhanced amplification of DNA libraries. A phenomenological mathematical model that forms an essential basis for optimal use of ePCR for library amplification was developed. A detailed description by high-throughput sequencing of amplified DNA-encoded libraries highlights the principal advantages of ePCR over bulk PCR. ePCR outperforms PCR, reduces gross DNA errors, and provides a more uniform distribution of the amplified sequences. The quasi single-molecule amplification achieved via ePCR represents the fundamental requirement in case of complex DNA templates being prone to diversity degeneration and provides a way to preserve the quality of DNA libraries.
journal_name
Proc Natl Acad Sci U S Aauthors
Terekhov SS,Eliseev IE,Ovchinnikova LA,Kabilov MR,Prjibelski AD,Tupikin AE,Smirnov IV,Belogurov AA Jr,Severinov KV,Lomakin YA,Altman S,Gabibov AGdoi
10.1073/pnas.2017138117subject
Has Abstractpub_date
2020-11-03 00:00:00pages
27300-27306issue
44eissn
0027-8424issn
1091-6490pii
2017138117journal_volume
117pub_type
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