Structural insight into the recognition between Sufu and fused in the Hedgehog signal transduction pathway.

Abstract:

:Hedgehog signaling plays a crucial role in embryogenesis and adult tissue homeostasis, and mutations of its key components such as Suppressor of fused (Sufu) are closely associated with human diseases. The Ser/Thr kinase Fused (Fu) promotes Hedgehog signaling by phosphorylating the Cubitus interruptus (Ci)/Glioma-associated oncogene homologue (Gli) family of transcription factors. Sufu associates with both Fu and Ci/Gli, but the recognition mechanism between Sufu and Fu remains obscure. Here, our structure of the N-terminal domain (NTD) of Drosophila Sufu (dSufu) in complex with the Sufu-binding site (SBS) of Fu reveals that both main-chain β sheet formation and side-chain hydrophobic interactions contribute to the recognition between Sufu and Fu, and point mutations of highly conserved interface residues eliminated their association. Structural comparison suggests that Fu and Ci/Gli bind on opposite sides of dSufu-NTD, allowing the formation of a Fu-dSufu-Ci ternary complex which facilitates the phosphorylation of Ci/Gli by Fu. Hence, our results provide insights into the Sufu-Fu recognition mechanism.

journal_name

J Struct Biol

authors

Li H,Wang W,Zhang W,Wu G

doi

10.1016/j.jsb.2020.107614

subject

Has Abstract

pub_date

2020-11-01 00:00:00

pages

107614

issue

2

eissn

1047-8477

issn

1095-8657

pii

S1047-8477(20)30187-8

journal_volume

212

pub_type

杂志文章
  • Nanobeam X-ray fluorescence and diffraction computed tomography on human bone with a resolution better than 120 nm.

    abstract::Studying nanostructured hierarchical materials such as the biomineralized bone is challenging due to their complex 3D structures that call for high spatial resolution. One route to study such materials is X-ray powder diffraction computed tomography (XRD-CT) that reveals the 3D distribution of crystalline phases and X...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2020.107631

    authors: Palle J,Wittig NK,Kubec A,Niese S,Rosenthal M,Burghammer M,Grünewald TA,Birkedal H

    更新日期:2020-12-01 00:00:00

  • The structure of a COPII tubule.

    abstract::Nearly a third of all eukaryotic proteins are transported from the ER to the Golgi apparatus through the secretory pathway using COPII coated vesicles. Evidence suggests that this transport occurs via 500-900 Å vesicles that bud from the ER membrane. It has been shown that procollagen molecules utilize the COPII prote...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2010.09.002

    authors: O'Donnell J,Maddox K,Stagg S

    更新日期:2011-02-01 00:00:00

  • Studying chaperone-proteases using a real-time approach based on FRET.

    abstract::Chaperone-proteases are responsible for the processive breakdown of proteins in eukaryotic, archaeal and bacterial cells. They are composed of a cylinder-shaped protease lined on the interior with proteolytic sites and of ATPase rings that bind to the apical sides of the protease to control substrate entry. We present...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2009.07.003

    authors: Kolygo K,Ranjan N,Kress W,Striebel F,Hollenstein K,Neelsen K,Steiner M,Summer H,Weber-Ban E

    更新日期:2009-11-01 00:00:00

  • Domains of Importin-alpha2 required for ring canal assembly during Drosophila oogenesis.

    abstract::Null-mutation in Drosophila importin-alpha2, such as the deficiency imp-alpha2(D14), causes recessive female sterility with the formation of dumpless eggs. In imp-alpha2(D14) the transfer of nurse cell components to the oocyte is interrupted and the Kelch protein, an oligomeric ring canal actin organizer, is normally ...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2005.12.007

    authors: Gorjánácz M,Török I,Pomozi I,Garab G,Szlanka T,Kiss I,Mechler BM

    更新日期:2006-04-01 00:00:00

  • Common lines modeling for reference free Ab-initio reconstruction in cryo-EM.

    abstract::We consider the problem of estimating an unbiased and reference-free ab initio model for non-symmetric molecules from images generated by single-particle cryo-electron microscopy. The proposed algorithm finds the globally optimal assignment of orientations that simultaneously respects all common lines between all imag...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2017.09.007

    authors: Greenberg I,Shkolnisky Y

    更新日期:2017-11-01 00:00:00

  • Radiation damage effects at four specimen temperatures from 4 to 100 K.

    abstract::Radiation damage is the primary factor that limits resolution in electron cryo-microscopy (cryo-EM) of frozen-hydrated biological samples. Negative effects of radiation damage are attenuated by cooling specimens to cryogenic temperatures using liquid nitrogen or liquid helium. We have examined the relationship between...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2009.11.001

    authors: Bammes BE,Jakana J,Schmid MF,Chiu W

    更新日期:2010-03-01 00:00:00

  • Conformational plasticity of the response regulator CpxR, a key player in Gammaproteobacteria virulence and drug-resistance.

    abstract::The transcriptional regulator CpxR mediates an adaptive response to envelope stress, tightly linked to virulence and antibiotics resistance in several Gammaproteobacteria pathogens. In this work, we integrated crystallographic and small-angle X-ray scattering data to gain insights into the structure and conformational...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2018.08.001

    authors: Mechaly AE,Haouz A,Sassoon N,Buschiazzo A,Betton JM,Alzari PM

    更新日期:2018-11-01 00:00:00

  • Structural characteristics of the beta-sheet-like human and rat islet amyloid polypeptides as determined by scanning tunneling microscopy.

    abstract::We demonstrate in this work that scanning tunneling microscopy (STM) provides a useful approach to obtaining structural information about human islet amyloid polypeptide (hIAPP) and rat islet amyloid polypeptide (rIAPP) assembly on highly oriented pyrolytic graphite (HOPG) with sub-molecular resolution. The observed h...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2009.05.009

    authors: Mao X,Ma X,Liu L,Niu L,Yang Y,Wang C

    更新日期:2009-09-01 00:00:00

  • The combination of chemical fixation procedures with high pressure freezing and freeze substitution preserves highly labile tissue ultrastructure for electron tomography applications.

    abstract::The emergence of electron tomography as a tool for three dimensional structure determination of cells and tissues has brought its own challenges for the preparation of thick sections. High pressure freezing in combination with freeze substitution provides the best method for obtaining the largest volume of well-preser...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2007.09.002

    authors: Sosinsky GE,Crum J,Jones YZ,Lanman J,Smarr B,Terada M,Martone ME,Deerinck TJ,Johnson JE,Ellisman MH

    更新日期:2008-03-01 00:00:00

  • Review: protein secondary structure prediction continues to rise.

    abstract::Methods predicting protein secondary structure improved substantially in the 1990s through the use of evolutionary information taken from the divergence of proteins in the same structural family. Recently, the evolutionary information resulting from improved searches and larger databases has again boosted prediction a...

    journal_title:Journal of structural biology

    pub_type: 杂志文章,评审

    doi:10.1006/jsbi.2001.4336

    authors: Rost B

    更新日期:2001-05-01 00:00:00

  • Structure and function of Hsp78, the mitochondrial ClpB homolog.

    abstract::The cellular role of Hsp100/Clp chaperones in maintaining protein stability is based on two functional aspects. Under normal growth conditions they represent components of cellular protein quality control machineries that selectively remove damaged or misfolded polypeptides in cooperation with specific proteases. Afte...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2006.04.007

    authors: Leidhold C,von Janowsky B,Becker D,Bender T,Voos W

    更新日期:2006-10-01 00:00:00

  • Crystal structure of chagasin, the endogenous cysteine-protease inhibitor from Trypanosoma cruzi.

    abstract::Trypanosoma cruzi chagasin belongs to a recently discovered family of cysteine protease inhibitors found in lower eukaryotes and prokaryotes but not in mammals. Chagasin binds tightly to cruzain, the major lysosomal T. cruzi cysteine protease, involved with infectivity and survival of the parasite in mammalian host ce...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2006.07.017

    authors: Figueiredo da Silva AA,de Carvalho Vieira L,Krieger MA,Goldenberg S,Zanchin NI,Guimarães BG

    更新日期:2007-02-01 00:00:00

  • 3D microstructural study of selachimorph enameloid evolution.

    abstract::Enameloid, the hyper-mineralized tissue covering shark teeth is a complex structure resulting from both ameloblast and odontoblast activity. The way these two types of cells interact to set up this tissue is not fully understood and results in the formation of subunits in the enameloid: the Single Crystallite Enameloi...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2020.107664

    authors: Fellah C,Douillard T,Maire E,Meille S,Reynard B,Cuny G

    更新日期:2020-11-19 00:00:00

  • Maximum likelihood refinement of electron microscopy data with normalization errors.

    abstract::Commonly employed data models for maximum likelihood refinement of electron microscopy images behave poorly in the presence of normalization errors. Small variations in background mean or signal brightness are relatively common in cryo-electron microscopy data, and varying signal-to-noise ratios or artifacts in the im...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2009.02.007

    authors: Scheres SH,Valle M,Grob P,Nogales E,Carazo JM

    更新日期:2009-05-01 00:00:00

  • Structural ensemble and biological activity of DciA intrinsically disordered region.

    abstract::DciA is a newly discovered bacterial protein involved in loading the replicative helicase DnaB onto DNA at the initiation step of chromosome replication. Its three-dimensional structure is composed of a folded N-terminal domain (residues 1-111) resembling K Homology domains and a long disordered C-terminal tail (resid...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2020.107573

    authors: Chan-Yao-Chong M,Marsin S,Quevillon-Cheruel S,Durand D,Ha-Duong T

    更新日期:2020-10-01 00:00:00

  • Axially aligned organic fibers and amorphous calcium phosphate form the claws of a terrestrial isopod (Crustacea).

    abstract::Skeletal elements that are exposed to heavy mechanical loads may provide important insights into the evolutionary solutions to mechanical challenges. We analyzed the microscopic architecture of dactylus claws in the woodlice Porcellio scaber and correlated these observations with analyses of the claws' mineral composi...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2016.06.008

    authors: Vittori M,Srot V,Žagar K,Bussmann B,van Aken PA,Čeh M,Štrus J

    更新日期:2016-08-01 00:00:00

  • Crystal structure of a phycourobilin-containing phycoerythrin at 1.90-A resolution.

    abstract::The structure of R-phycoerythrin (R-PE) from the red alga Griffithsia monilis was solved at 1.90-A resolution by molecular replacement, using the atomic coordinates of cyanobacterial phycocyanin from Fremyella diplosiphon as a model. The crystallographic R factor for the final model is 17.5% (Rfree 22.7%) for reflecti...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1006/jsbi.1999.4106

    authors: Ritter S,Hiller RG,Wrench PM,Welte W,Diederichs K

    更新日期:1999-06-15 00:00:00

  • A validated active contour method driven by parabolic arc model for detection and segmentation of mitochondria.

    abstract::Recent studies reveal that mitochondria take substantial responsibility in cellular functions that are closely related to aging diseases caused by degeneration of neurons. These studies emphasize that the membrane and crista morphology of a mitochondrion should receive attention in order to investigate the link betwee...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2016.03.002

    authors: Tasel SF,Mumcuoglu EU,Hassanpour RZ,Perkins G

    更新日期:2016-06-01 00:00:00

  • The promise of macromolecular crystallization in microfluidic chips.

    abstract::Microfluidics, or lab-on-a-chip technology, is proving to be a powerful, rapid, and efficient approach to a wide variety of bioanalytical and microscale biopreparative needs. The low materials consumption, combined with the potential for packing a large number of experiments in a few cubic centimeters, makes it an att...

    journal_title:Journal of structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/s1047-8477(03)00049-2

    authors: van der Woerd M,Ferree D,Pusey M

    更新日期:2003-04-01 00:00:00

  • Crystallisation of CP43, a chlorophyll binding protein of photosystem II: an electron microscopy analysis of molecular packing.

    abstract::Microcrystals of the chlorophyll binding protein, CP43, isolated from spinach thylakoid membranes have been studied by electron microscopy both in negative stain and in vitreous ice. Image analyses of three characteristic views show that the crystals are built of five different layers perpendicular to the c-axis. Each...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1006/jsbi.2000.4294

    authors: Büchel C,Morris E,Barber J

    更新日期:2000-09-01 00:00:00

  • Nuclear structure and gene activity in human differentiated cells.

    abstract::The nuclear arrangement of the ABL, c-MYC, and RB1 genes was quantitatively investigated in human undifferentiated HL-60 cells and in a terminally differentiated population of human granulocytes. The ABL gene was expressed in both cell types, the c-MYC gene was active in HL-60 cells and down-regulated in granulocytes,...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/s1047-8477(02)00560-9

    authors: Bártová E,Kozubek S,Jirsová P,Kozubek M,Gajová H,Lukásová E,Skalníková M,Ganová A,Koutná I,Hausmann M

    更新日期:2002-08-01 00:00:00

  • The fibrils of Ure2p homologs from Saccharomyces cerevisiae and Saccharoymyces paradoxus have similar cross-β structure in both dried and hydrated forms.

    abstract::The ability to convert into amyloid fibrils is a common feature of prion proteins. However, not all amyloid-forming proteins act as prions. Here, we compared two homologs of the yeast prion protein Ure2 from Saccharomyces cerevisiae and Saccharomyces paradoxus, ScUre2p and SpUre2p, which have different prion propensit...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2011.03.008

    authors: Wang YQ,Bongiovanni M,Gras SL,Perrett S

    更新日期:2011-06-01 00:00:00

  • Finding rigid bodies in protein structures: Application to flexible fitting into cryoEM maps.

    abstract::We present RIBFIND, a method for detecting flexibility in protein structures via the clustering of secondary structural elements (SSEs) into rigid bodies. To test the usefulness of the method in refining atomic structures within cryoEM density we incorporated it into our flexible fitting protocol (Flex-EM). Our benchm...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2011.10.011

    authors: Pandurangan AP,Topf M

    更新日期:2012-02-01 00:00:00

  • Crystal structure of the N-terminal RecA-like domain of a DEAD-box RNA helicase, the Dugesia japonica vasa-like gene B protein.

    abstract::The Dugesia japonica vasa-like gene B (DjVLGB) protein is a DEAD-box RNA helicase of a planarian, which is well known for its strong regenerative capacity. DjVLGB shares sequence similarity to the Drosophila germ-line-specific DEAD-box RNA helicase Vasa, and even higher similarity to its paralogue, mouse PL10. In this...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2005.01.006

    authors: Kurimoto K,Muto Y,Obayashi N,Terada T,Shirouzu M,Yabuki T,Aoki M,Seki E,Matsuda T,Kigawa T,Okumura H,Tanaka A,Shibata N,Kashikawa M,Agata K,Yokoyama S

    更新日期:2005-04-01 00:00:00

  • The structural basis of the low catalytic activities of the two minor β-carbonic anhydrases of the filamentous fungus Aspergillus fumigatus.

    abstract::The β-carbonic anhydrases (β-CAs) are widely distributed zinc-metalloenzymes that play essential roles in growth, survival, development and virulence in fungi. The majority of filamentous ascomycetes possess multiple β-CA isoforms among which major and minor forms have been characterized. We examined the catalytic beh...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2019.07.011

    authors: Kim S,Kim NJ,Hong S,Kim S,Sung J,Jin MS

    更新日期:2019-10-01 00:00:00

  • Design of net-charged abc-type collagen heterotrimers.

    abstract::Net-negatively-charged heterospecific A:B:C collagen peptide heterotrimers were designed using an automated computational approach. The design algorithm considers both target stability and the energy gap between the target states and misfolded competing states. Structural characterization indicates the net-negative ch...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2013.04.006

    authors: Parmar AS,Zahid S,Belure SV,Young R,Hasan N,Nanda V

    更新日期:2014-02-01 00:00:00

  • Bacterial helicases.

    abstract::Helicases are proteins that use the energy of ATP hydrolysis to open double-stranded DNA, RNA, or RNA-DNA hybrids into two single strands. Based upon sequence analysis, at least 12 helicases exist in Escherichia coli. We know that these proteins play important roles in DNA replication, recombination, repair, and trans...

    journal_title:Journal of structural biology

    pub_type: 杂志文章,评审

    doi:10.1006/jsbi.1998.4050

    authors: Egelman EH

    更新日期:1998-12-15 00:00:00

  • NMR and small-angle scattering-based structural analysis of protein complexes in solution.

    abstract::Structural analysis of multi-domain protein complexes is a key challenge in current biology and a prerequisite for understanding the molecular basis of essential cellular processes. The use of solution techniques is important for characterizing the quaternary arrangements and dynamics of domains and subunits of these ...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2010.11.004

    authors: Madl T,Gabel F,Sattler M

    更新日期:2011-03-01 00:00:00

  • Crystallization and preliminary X-ray diffraction analysis of UDP-N-acetylglucosamine enolpyruvyltransferase of Enterobacter cloacae.

    abstract::Single crystals of UDP-N-acetylglucosamine enolpyruvyltransferase of Enterobacter cloacae have been grown by vapor diffusion using phosphate buffer as the precipitant. The crystals belong to the monoclinic space group C2 with a = 86.9 A, b = 155.9 A, c = 83.8 A, beta = 91.6 degrees. Assuming two monomers per asymmetri...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1006/jsbi.1996.0071

    authors: Sack S,Dauter Z,Wanke C,Amrhein N,Mandelkow E,Schönbrunn E

    更新日期:1996-07-01 00:00:00

  • A new HIV-1 Rev structure optimizes interaction with target RNA (RRE) for nuclear export.

    abstract::HIV-1 Rev mediates the nuclear export of unspliced and partially-spliced viral transcripts for the production of progeny genomes and structural proteins. In this process, four (or more) copies of Rev assemble onto a highly-structured 351-nt region in such viral transcripts, the Rev response element (RRE). How this occ...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2018.03.011

    authors: Watts NR,Eren E,Zhuang X,Wang YX,Steven AC,Wingfield PT

    更新日期:2018-08-01 00:00:00