Transcriptome profiling of spike provides expression features of genes related to terpene biosynthesis in lavender.

Abstract:

:Lavender (Lavandula angustifolia) is an important economic plant because of the value of its essential oil (EO). The Yili Valley in Xinjiang has become the largest lavender planting base in China. However, there is a lack of research on the gene expression regulation of EO biosynthesis and metabolism in local varieties. Here, de novo transcriptome analysis of inflorescence of three development stages from initial flower bud to flowering stage 50% from two lavender cultivars with contrasting EO production revealed the dynamics of 100,177 differentially expressed transcripts (DETs) in various stages of spike development within and across the cultivars. The lavender transcriptome contained 77 DETs with annotations related to terpenoid biosynthesis. The expression profiles of the 27 genes involved in the methylerythritol phosphate (MEP) pathway, 22 genes in the mevalonate (MVA) pathway, 28 genes related to monoterpene and sesquiterpene biosynthesis during inflorescence development were comprehensively characterized, and possible links between the expression changes of genes and contents of EO constituents were explored. The upregulated genes were mainly concentrated in the MEP pathway, while most genes in the MVA pathway were downregulated during flower development, and cultivars with a higher EO content presented higher expression of genes in the MEP pathway, indicating that EOs were chiefly produced through the MEP pathway. Additionally, MYB transcription factors constituted the largest number of transcripts in all samples, suggesting their potential roles in regulating EO biosynthesis. The sequences and transcriptional patterns of the transcripts will be helpful for understanding the molecular basis of lavender terpene biosynthesis.

journal_name

Sci Rep

journal_title

Scientific reports

authors

Guo D,Kang K,Wang P,Li M,Huang X

doi

10.1038/s41598-020-63950-4

subject

Has Abstract

pub_date

2020-04-24 00:00:00

pages

6933

issue

1

issn

2045-2322

pii

10.1038/s41598-020-63950-4

journal_volume

10

pub_type

杂志文章
  • Formation and stability of complex metallic phases including quasicrystals explored through combinatorial methods.

    abstract::Aluminum-based quasicrystals typically form across narrow composition ranges within binary to quaternary alloys, which makes their fabrication and characterization challenging. Here, we use combinatorial approaches together with fast characterization techniques to study a wide compositional range including known quasi...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-43666-w

    authors: Wolf W,Kube SA,Sohn S,Xie Y,Cha JJ,Scanley BE,Kiminami CS,Bolfarini C,Botta WJ,Schroers J

    更新日期:2019-05-09 00:00:00

  • Retraction Note: MicroRNA-27a-3p Modulates the Wnt/β-Catenin Signaling Pathway to Promote Epithelial-Mesenchymal Transition in Oral Squamous Carcinoma Stem Cells by Targeting SFRP1.

    abstract::Editor's Note: this Article has been retracted; the Retraction Note is available at https://www.nature.com/articles/s41598-020-77203-x. ...

    journal_title:Scientific reports

    pub_type: 已发布勘误,撤回出版物

    doi:10.1038/s41598-020-77203-x

    authors: Qiao B,He BX,Cai JH,Tao Q,Lam AK

    更新日期:2020-12-01 00:00:00

  • Central s-resistin deficiency ameliorates hypothalamic inflammation and increases whole body insulin sensitivity.

    abstract::S-resistin, a non-secretable resistin isoform, acts as an intracrine factor that regulates adipocyte maduration, inflammatory and insulin response in 3T3-L1 cells. However, its intracellular function in vivo is still unknown. In this study, we analyze the central role of s-resistin, decreasing its hypothalamic express...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-22255-3

    authors: Rodríguez M,Pintado C,Moltó E,Gallardo N,Fernández-Martos CM,López V,Andrés A,Arribas C

    更新日期:2018-03-02 00:00:00

  • From EST to novel spider silk gene identification for production of spidroin-based biomaterials.

    abstract::A cDNA library from a pool of all the seven silk glands from a tropical spider species was constructed. More than 1000 expressed sequence tag (EST) clones were created. Almost 65% of the EST clones were identified and around 50% were annotated. The cellular and functional distribution of the EST clones indicated high ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-13876-1

    authors: Huang W,Zhang Y,Chen Y,Wang Y,Yuan W,Zhang N,Lam TJ,Gong Z,Yang D,Lin Z

    更新日期:2017-10-17 00:00:00

  • Early involvement of cellular stress and inflammatory signals in the pathogenesis of tubulointerstitial kidney disease due to UMOD mutations.

    abstract::Autosomal dominant tubulointerstitial kidney disease (ADTKD) is an inherited disorder that causes progressive kidney damage and renal failure. Mutations in the UMOD gene, encoding uromodulin, lead to ADTKD-UMOD related. Uromodulin is a GPI-anchored protein exclusively produced by epithelial cells of the thick ascendin...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-07804-6

    authors: Trudu M,Schaeffer C,Riba M,Ikehata M,Brambilla P,Messa P,Martinelli-Boneschi F,Rastaldi MP,Rampoldi L

    更新日期:2017-08-07 00:00:00

  • Variability and reproducibility in deep learning for medical image segmentation.

    abstract::Medical image segmentation is an important tool for current clinical applications. It is the backbone of numerous clinical diagnosis methods, oncological treatments and computer-integrated surgeries. A new class of machine learning algorithm, deep learning algorithms, outperforms the results of classical segmentation ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-69920-0

    authors: Renard F,Guedria S,Palma N,Vuillerme N

    更新日期:2020-08-13 00:00:00

  • Spred2-deficiecy Protects Mice from Polymicrobial Septic Peritonitis by Enhancing Inflammation and Bacterial Clearance.

    abstract::Sepsis is an infection-induced systemic inflammatory syndrome and a major cause of death for critically ill patients. Here, we examined whether the absence of Sprouty-related EVH1-domain-containing protein 2 (Spred2), a negative regulator of the Ras/Raf/ERK/MAPK pathway, influences host defense against polymicrobial s...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-13204-7

    authors: Itakura J,Sato M,Ito T,Mino M,Fushimi S,Takahashi S,Yoshimura T,Matsukawa A

    更新日期:2017-10-09 00:00:00

  • Japanese beetles' feeding on milkweed flowers may compromise efforts to restore monarch butterfly habitat.

    abstract::The eastern North American migratory population of monarch butterflies (Danaus plexippus) is in serious decline. Habitat restoration, including adding millions of host plants to compensate for loss of milkweed in US cropland, is a key part of the international conservation strategy to return this iconic butterfly to s...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-30731-z

    authors: Baker AM,Potter DA

    更新日期:2018-08-14 00:00:00

  • Plasmonic Optical Imaging of Gold Nanorods Localization in Small Animals.

    abstract::Gold nanoparticles (GNP) have been intensively investigated for applications in cancer imaging and therapy. Most imaging studies focused on microscopic imaging. Their potential as optical imaging probes for whole body small animal imaging has rarely been explored. Taking advantage of their surface plasmon resonance (S...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-27624-6

    authors: Xu K,Shi J,Pourmand A,Udayakumar TS,Dogan N,Zhao W,Pollack A,Yang Y

    更新日期:2018-06-19 00:00:00

  • Simvastatin may induce insulin resistance through a novel fatty acid mediated cholesterol independent mechanism.

    abstract::Statins are a class of oral drugs that are widely used for treatment of hypercholesterolemia. Recent clinical data suggest that chronic use of these drugs increases the frequency of new onset diabetes. Studies to define the risks of statin-induced diabetes and its underlying mechanisms are clearly necessary. We explor...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep13823

    authors: Kain V,Kapadia B,Misra P,Saxena U

    更新日期:2015-09-08 00:00:00

  • A set of composite, non-redundant EEG measures of NREM sleep based on the power law scaling of the Fourier spectrum.

    abstract::Features of sleep were shown to reflect aging, typical sex differences and cognitive abilities of humans. However, these measures are characterized by redundancy and arbitrariness. Our present approach relies on the assumptions that the spontaneous human brain activity as reflected by the scalp-derived electroencephal...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-021-81230-7

    authors: Bódizs R,Szalárdy O,Horváth C,Ujma PP,Gombos F,Simor P,Pótári A,Zeising M,Steiger A,Dresler M

    更新日期:2021-01-21 00:00:00

  • Dual-Wavelength Terahertz Metasurfaces with Independent Phase and Amplitude Control at Each Wavelength.

    abstract::We have designed, fabricated and characterized dual-wavelength metasurfaces that function at two assigned terahertz wavelengths with independent phase and amplitude control at each wavelength. Specifically, we have designed a dual-wavelength achromatic metasurface-based deflector deflecting the incident wave to the sa...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep34020

    authors: Ding J,Xu N,Ren H,Lin Y,Zhang W,Zhang H

    更新日期:2016-09-23 00:00:00

  • Drivers of solar radiation variability in the McMurdo Dry Valleys, Antarctica.

    abstract::Annually averaged solar radiation in the McMurdo Dry Valleys, Antarctica has varied by over 20 W m-2 during the past three decades; however, the drivers of this variability are unknown. Because small differences in radiation are important to water availability and ecosystem functioning in polar deserts, determining th...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-23390-7

    authors: Obryk MK,Fountain AG,Doran PT,Lyons WB,Eastman R

    更新日期:2018-03-22 00:00:00

  • Chemical and Microstructural Characterization of pH and [Ca2+] Dependent Sol-Gel Transitions in Mucin Biopolymer.

    abstract::Mucus is responsible for controlling transport and barrier function in biological systems, and its properties can be significantly affected by compositional and environmental changes. In this study, the impacts of pH and CaCl2 were examined on the solution-to-gel transition of mucin, the primary structural component o...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-65392-4

    authors: Curnutt A,Smith K,Darrow E,Walters KB

    更新日期:2020-05-29 00:00:00

  • Dietary soybean meal affects intestinal homoeostasis by altering the microbiota, morphology and inflammatory cytokine gene expression in northern snakehead.

    abstract::A 63-day feeding trial was conducted in northern snakehead to observe the effects of a dietary soybean meal substitution on the microbiota community, morphology and inflammatory cytokine gene expression in the intestine. Four isonitrogenous and isoenergetic diets containing increasing levels of soybean meal were used ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-18430-7

    authors: Miao S,Zhao C,Zhu J,Hu J,Dong X,Sun L

    更新日期:2018-01-08 00:00:00

  • Population history and ecology, in addition to climate, influence human stature and body proportions.

    abstract::Worldwide variation in human stature and limb proportions is widely accepted to reflect thermal adaptation, but the contribution of population history to this variation is unknown. Furthermore, stature and relative lower limb length (LLL) show substantial plastic responses to environmental stressors, e.g., nutrition, ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-79501-w

    authors: Pomeroy E,Stock JT,Wells JCK

    更新日期:2021-01-11 00:00:00

  • Phylogenetic analysis of small ruminant lentiviruses in Germany and Iran suggests their expansion with domestic sheep.

    abstract::Small ruminant lentiviruses (SRLVs) are found in sheep in Germany and Iran. SRLVs have been classified into four genotypes: A-C and E. Genotype A has been subdivided into 20 subtypes. Previous studies suggested that, first, the ancestors of genotype A are those SRLVs found in Turkey, second, the evolution of SRLVs is ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-58990-9

    authors: Molaee V,Bazzucchi M,De Mia GM,Otarod V,Abdollahi D,Rosati S,Lühken G

    更新日期:2020-02-10 00:00:00

  • SgRNA Expression of CRIPSR-Cas9 System Based on MiRNA Polycistrons as a Versatile Tool to Manipulate Multiple and Tissue-Specific Genome Editing.

    abstract::CRISPR/Cas9-mediated genome editing is a next-generation strategy for genetic modifications. Typically, sgRNA is constitutively expressed relying on RNA polymerase III promoters. Polymerase II promoters initiate transcription in a flexible manner, but sgRNAs generated by RNA polymerase II promoter lost their nuclease ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-06216-w

    authors: Xie C,Chen YL,Wang DF,Wang YL,Zhang TP,Li H,Liang F,Zhao Y,Zhang GY

    更新日期:2017-07-19 00:00:00

  • Confinement Effect on Porosity and Permeability of Shales.

    abstract::Porosity and permeability are the key factors in assessing the hydrocarbon productivity of unconventional (shale) reservoirs, which are complex in nature due to their heterogeneous mineralogy and poorly connected nano- and micro-pore systems. Experimental efforts to measure these petrophysical properties posse many li...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-56885-y

    authors: Goral J,Panja P,Deo M,Andrew M,Linden S,Schwarz JO,Wiegmann A

    更新日期:2020-01-08 00:00:00

  • ATP amplifies NADPH-dependent and -independent neutrophil extracellular trap formation.

    abstract::Neutrophils are the first immune cells to kill invading microbes at sites of infection using a variety of processes, including the release of proteases, phagocytosis and the production of neutrophil extracellular traps (NETs). NET formation, or NETosis, is a specific and highly efficient process, which is induced by a...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-53058-9

    authors: Sofoluwe A,Bacchetta M,Badaoui M,Kwak BR,Chanson M

    更新日期:2019-11-12 00:00:00

  • Optimization reconstruction method of object profile using flexible laser plane and bi-planar references.

    abstract::An optimization method to reconstruct the object profile is performed by using a flexible laser plane and bi-planar references. The bi-planar references are considered as flexible benchmarks to realize the transforms among two world coordinate systems on the bi-planar references, the camera coordinate system and the i...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-19928-4

    authors: Xu G,Yuan J,Li X,Su J

    更新日期:2018-01-24 00:00:00

  • Percutaneous Irreversible Electroporation: Long-term survival analysis of 71 patients with inoperable malignant hepatic tumors.

    abstract::Aim of this retrospective analysis was to evaluate the survival times after percutaneous irreversible electroporation (IRE) in inoperable liver tumors not amenable to thermal ablation. 71 patients (14 females, 57 males, median age 63.5 ± 10.8 years) with 103 liver tumors were treated in 83 interventions using IRE (Nan...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep43687

    authors: Niessen C,Thumann S,Beyer L,Pregler B,Kramer J,Lang S,Teufel A,Jung EM,Stroszczynski C,Wiggermann P

    更新日期:2017-03-07 00:00:00

  • Quantifying the barrier lowering of ZnO Schottky nanodevices under UV light.

    abstract::In this study we measured the degrees to which the Schottky barrier heights (SBHs) are lowered in ZnO nanowire (NW) devices under illumination with UV light. We measured the I-V characteristics of ZnO nanowire devices to confirm that ZnO is an n-type semiconductor and that the on/off ratio is approximately 10(4). From...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep15123

    authors: Lu MY,Lu MP,You SJ,Chen CW,Wang YJ

    更新日期:2015-10-12 00:00:00

  • Adalimumab Reduces Photoreceptor Cell Death in A Mouse Model of Retinal Degeneration.

    abstract::Growing evidence suggests that inflammation is involved in the progression of retinitis pigmentosa (RP) both in patients and in animal models. The aim of this study was to investigate the effect of Adalimumab, a monoclonal anti-TNFα antibody, on retinal degeneration in a murine model of human autosomal recessive RP, t...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep11764

    authors: Martínez-Fernández de la Cámara C,Hernández-Pinto AM,Olivares-González L,Cuevas-Martín C,Sánchez-Aragó M,Hervás D,Salom D,Cuezva JM,de la Rosa EJ,Millán JM,Rodrigo R

    更新日期:2015-07-14 00:00:00

  • Mutual reinforcement of inflammation and carcinogenesis by the Helicobacter pylori CagA oncoprotein.

    abstract::Helicobacter pylori cagA-positive strain delivers the CagA oncoprotein into gastric epithelial cells and at the same time elicits stomach inflammation. To experimentally investigate the pathophysiological interplay between CagA and inflammation, transgenic mice systemically expressing the bacterial cagA gene were trea...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep10024

    authors: Suzuki N,Murata-Kamiya N,Yanagiya K,Suda W,Hattori M,Kanda H,Bingo A,Fujii Y,Maeda S,Koike K,Hatakeyama M

    更新日期:2015-05-06 00:00:00

  • Capsicum annuum transcription factor WRKYa positively regulates defense response upon TMV infection and is a substrate of CaMK1 and CaMK2.

    abstract::Plants are constantly exposed to pathogens and environmental stresses. To minimize damage caused by these potentially harmful factors, plants respond by massive transcriptional reprogramming of various stress-related genes via major transcription factor families. One of the transcription factor families, WRKY, plays a...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep07981

    authors: Huh SU,Lee GJ,Jung JH,Kim Y,Kim YJ,Paek KH

    更新日期:2015-01-23 00:00:00

  • Fungal community assemblage of different soil compartments in mangrove ecosystem.

    abstract::The fungal communities of different soil compartments in mangrove ecosystem are poorly studied. We sequenced the internal transcribed spacer (ITS) regions to characterize the fungal communities in Avicennia marina root-associated soils (rhizosphere and pneumatophore) and bulk soil compartments. The rhizosphere but not...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-09281-3

    authors: Sanka Loganathachetti D,Poosakkannu A,Muthuraman S

    更新日期:2017-08-17 00:00:00

  • Cold tolerance and silencing of three cold-tolerance genes of overwintering Chinese white pine larvae.

    abstract::The values of physiological indices and the enzymes activities involved in the overwintering stage were studied in D. armandi larvae in each month from October 2014 to March 2015. The sorbitol, trehalose and glycerol values initially tended to increase as the ambient temperature decreased, before declining until the e...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep34698

    authors: Wang J,Zhang RR,Gao GQ,Ma MY,Chen H

    更新日期:2016-10-05 00:00:00

  • Incorporating hybrid models into lysine malonylation sites prediction on mammalian and plant proteins.

    abstract::Protein malonylation, a reversible post-translational modification of lysine residues, is associated with various biological functions, such as cellular regulation and pathogenesis. In proteomics, to improve our understanding of the mechanisms of malonylation at the molecular level, the identification of malonylation ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-67384-w

    authors: Chung CR,Chang YP,Hsu YL,Chen S,Wu LC,Horng JT,Lee TY

    更新日期:2020-06-29 00:00:00

  • Comparison of phosphorylation and assembly of photosystem complexes and redox homeostasis in two wheat cultivars with different drought resistance.

    abstract::Reversible phosphorylation of proteins and the assembly of thylakoid complexes are the important protective mechanism against environmental stresses in plants. This research was aimed to investigate the different responses of the antioxidant defense system and photosystem II (PSII) to osmotic stress between drought-re...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-13145-1

    authors: Chen YE,Cui JM,Su YQ,Zhang CM,Ma J,Zhang ZW,Yuan M,Liu WJ,Zhang HY,Yuan S

    更新日期:2017-10-05 00:00:00