Abstract:
:Photoperiod is one of the important factors leading to seasonal reproduction of sheep. However, the molecular mechanisms underlying the photoperiod regulation of seasonal reproduction remain poorly understood. In this study, we compared the expression profiles of mRNAs, lncRNAs, and circRNAs in uterine tissues from Sunite sheep during three different photoperiods, namely, the short photoperiod (SP), short transfer to long photoperiod (SLP), and long photoperiod (LP). The results showed that 298, 403, and 378 differentially expressed (DE) mRNAs, 171, 491, and 499 DE lncRNAs, and 124, 270, and 400 DE circRNAs were identified between SP and LP, between SP and SLP, and between LP and SLP, respectively. Furthermore, functional enrichment analysis showed that the differentially expressed RNAs were mainly involved in the GnRH signaling pathway, thyroid hormone synthesis, and thyroid hormone signaling pathway. In addition, co-expression networks of lncRNA-mRNA were constructed based on the correlation analysis between the differentially expressed RNAs. Our study provides new insights into the expression changes of RNAs in different photoperiods, which might contribute to understanding the molecular mechanisms of seasonal reproduction in sheep.
journal_name
Genes (Basel)journal_title
Genesauthors
La Y,He X,Zhang L,Di R,Wang X,Gan S,Zhang X,Zhang J,Hu W,Chu Mdoi
10.3390/genes11030301subject
Has Abstractpub_date
2020-03-12 00:00:00issue
3issn
2073-4425pii
genes11030301journal_volume
11pub_type
杂志文章相关文献
Genes文献大全abstract::The autophagy-lysosome pathway, which involves many crucial genes and proteins, plays crucial roles in the maintenance of intracellular homeostasis by the degradation of damaged components. At present, some of these genes and proteins have been identified but their specific functions are largely unknown. This study wa...
journal_title:Genes
pub_type: 杂志文章
doi:10.3390/genes10100751
更新日期:2019-09-25 00:00:00
abstract::The homeodomain-leucine zipper (HD-Zip) transcription factor family is a key transcription factor family and unique to the plant kingdom. It consists of a homeodomain and a leucine zipper that serve in combination as a dimerization motif. The family can be classified into four subfamilies, and these subfamilies partic...
journal_title:Genes
pub_type: 杂志文章
doi:10.3390/genes7050019
更新日期:2016-05-17 00:00:00
abstract::B chromosomes (Bs) were discovered a century ago, and since then, most studies have focused on describing their distribution and abundance using traditional cytogenetics. Only recently have attempts been made to understand their structure and evolution at the level of DNA sequence. Many questions regarding the origin,...
journal_title:Genes
pub_type: 杂志文章
doi:10.3390/genes9120610
更新日期:2018-12-05 00:00:00
abstract::Familial hypercholesterolemia (FH) is a common autosomal codominant disorder, characterized by elevated low-density lipoprotein cholesterol levels causing premature atherosclerotic cardiovascular disease. About 2900 variants of LDLR, APOB, and PCSK9 genes potentially associated with FH have been described earlier. Nev...
journal_title:Genes
pub_type: 杂志文章
doi:10.3390/genes12010066
更新日期:2021-01-06 00:00:00
abstract::Transcriptional activation of eukaryotic genes is accompanied, in general, by a change in the sensitivity of promoter chromatin to endonucleases. The structural basis of this alteration has remained elusive for decades; but the change has been viewed as a transformation of one structure into another, from "closed" to ...
journal_title:Genes
pub_type: 杂志文章,评审
doi:10.3390/genes6030469
更新日期:2015-06-30 00:00:00
abstract::This special issue of Genes demonstrates clearly that research in epigenetics has proceeded at a very rapid pace in the last decade. [...]. ...
journal_title:Genes
pub_type: 社论
doi:10.3390/genes11010023
更新日期:2019-12-23 00:00:00
abstract::Leafminer insects of the genus Liriomyza are small flies whose larvae feed on the internal tissue of some of the most important crop plants for the human diet. Several of these pest species are highly uniform from the morphological point of view, meaning molecular data represents the only reliable taxonomic tool usefu...
journal_title:Genes
pub_type: 杂志文章
doi:10.3390/genes9110554
更新日期:2018-11-15 00:00:00
abstract::While methods for detecting SNVs and indels in circulating tumor DNA (ctDNA) with hybridization capture-based next-generation sequencing (NGS) have been available, copy number variations (CNVs) detection is more challenging. Here, we present a method enabling CNV detection from a 150-gene panel using a very low amount...
journal_title:Genes
pub_type: 杂志文章
doi:10.3390/genes10110926
更新日期:2019-11-14 00:00:00
abstract::Aging is a complex multi-layered phenomenon. The study of aging in humans is based on the use of biological material from hard-to-gather tissues and highly specific cohorts. The introduction of cell reprogramming techniques posed promising features for medical practice and basic research. Recently, a growing number of...
journal_title:Genes
pub_type: 杂志文章,评审
doi:10.3390/genes9010039
更新日期:2018-01-16 00:00:00
abstract:BACKGROUND:Large-scale screening of drug sensitivity on cancer cell models can mimic in vivo cellular behavior providing wider scope for biological research on cancer. Since the therapeutic effect of a single drug or drug combination depends on the individual patient's genome characteristics and cancer cells integratio...
journal_title:Genes
pub_type: 杂志文章
doi:10.3390/genes11030263
更新日期:2020-02-28 00:00:00
abstract::This article explores the mechanism of miR-194 on the proliferation and apoptosis of Aβ1-42-transduced hippocampal neurons. Aβ1-42-transduced hippocampal neuron model was established by inducing hippocampal neurons with Aβ1-42. MTT assay and flow cytometry were used to detect the viability and apoptosis of hippocampal...
journal_title:Genes
pub_type: 杂志文章
doi:10.3390/genes10040313
更新日期:2019-04-21 00:00:00
abstract::The genus Lactobacillus includes species that may inhabit different anatomical locations in the human body, but the greatest percentage of its species are inhabitants of the gut. Lactobacilli are well known for their probiotic characteristics, although some species may become pathogenic and exert negative effects on h...
journal_title:Genes
pub_type: 杂志文章
doi:10.3390/genes11101234
更新日期:2020-10-21 00:00:00
abstract::In China, the production for duck meat is second only to that of chicken, and the demand for duck meat is also increasing. However, there is still unclear on the internal mechanism of regulating skeletal muscle growth and development in duck. This study aimed to identity candidate genes related to growth of duck skele...
journal_title:Genes
pub_type: 杂志文章
doi:10.3390/genes11101228
更新日期:2020-10-20 00:00:00
abstract::The Mexican population has one of the highest prevalences of metabolic syndrome (MetS) worldwide. The aim of this study was to investigate the association of single-nucleotide polymorphisms (SNPs) with MetS and its components. First, we performed a pilot Genome-wide association study (GWAS) scan on a sub-sample derive...
journal_title:Genes
pub_type: 杂志文章
doi:10.3390/genes11101192
更新日期:2020-10-14 00:00:00
abstract::The woody Sonchus alliance consists primarily of woody species of the genus Sonchus (subgenus Dendrosonchus; family Asteraceae). Most members of the alliance are endemic to the oceanic archipelagos in the phytogeographic region of Macaronesia. They display extensive morphological, ecological, and anatomical diversity,...
journal_title:Genes
pub_type: 杂志文章
doi:10.3390/genes10030217
更新日期:2019-03-14 00:00:00
abstract::Winged bean (Psophocarpus tetragonolobus) is an herbaceous multipurpose legume grown in hot and humid countries as a pulse, vegetable (leaves and pods), or root tuber crop depending on local consumption preferences. In addition to its different nutrient-rich edible parts which could contribute to food and nutritional ...
journal_title:Genes
pub_type: 杂志文章
doi:10.3390/genes8030100
更新日期:2017-03-09 00:00:00
abstract::We report the development of a multigene gene expression assay on the BioMark HD platform for the evaluation of immune competence (ImCom) in farmed Atlantic salmon. The first version of the assay included 92 genes selected on the basis of transcriptome analyses in 54 trials that challenged the immune system; annotatio...
journal_title:Genes
pub_type: 杂志文章
doi:10.3390/genes11111236
更新日期:2020-10-22 00:00:00
abstract::Shiga toxin-producing Escherichia coli (STEC) are foodborne pathogens associated with outbreaks and hemolytic-uremic syndrome. Cattle and meat foods are the main reservoir and infection source, respectively. Pathogenicity islands (PAIs) play an important role in STEC pathogenicity, and non-locus of the enterocyte effa...
journal_title:Genes
pub_type: 杂志文章
doi:10.3390/genes9020081
更新日期:2018-02-10 00:00:00
abstract::Functional and folding constraints impose interdependence between interacting sites along the protein chain that are envisaged through protein sequence evolution. Studying the influence of structure in phylogenetic models requires detailed and reliable structural models. Polysaccharide deacetylases (PDAs), members of ...
journal_title:Genes
pub_type: 杂志文章
doi:10.3390/genes9080386
更新日期:2018-07-31 00:00:00
abstract::Colorectal cancer is the fourth most common neoplasia in Europe, where it accounts for 28.2 new cases per 100,000 inhabitants. In an effort to decrease the incidence of this disease, various prevention measures are being studied, one of which are anthocyanin-rich foods. Anthocyanins are potent antioxidant flavonoids m...
journal_title:Genes
pub_type: 杂志文章
doi:10.3390/genes9030133
更新日期:2018-03-01 00:00:00
abstract::Keratin-associated proteins (KAPs) are structural components of wool and hair fibers. To date, eight high glycine/tyrosine KAP (HGT-KAP) families have been identified in humans, but only three have been identified in sheep. In this study, the putative ovine homolog of the human KAP22-1 gene (KRTAP22-1) was amplified u...
journal_title:Genes
pub_type: 杂志文章
doi:10.3390/genes8010027
更新日期:2017-01-11 00:00:00
abstract::RabGTPase activating proteins (RabGAP) are responsible for directing the deactivation of vesicular trafficking master regulators associated to plant development, the RabGTPase proteins. Recently, RabGAPs were identified in Arabidopsis and rice, but studies were not yet reported in tomato. Herein, we identified 24 RabG...
journal_title:Genes
pub_type: 杂志文章
doi:10.3390/genes10090638
更新日期:2019-08-23 00:00:00
abstract::Approximately 150 fungal species are considered as primary pathogens of humans and animals[...]. ...
journal_title:Genes
pub_type: 社论
doi:10.3390/genes10020136
更新日期:2019-02-12 00:00:00
abstract::Intercellular karyotypic variability has been a focus of genetic research for more than 50 years. It has been repeatedly shown that chromosome heterogeneity manifesting as chromosomal mosaicism is associated with a variety of human diseases. Due to the ability of changing dynamically throughout the ontogeny, chromosom...
journal_title:Genes
pub_type: 杂志文章,评审
doi:10.3390/genes10050379
更新日期:2019-05-19 00:00:00
abstract::The P-type plasma membrane (PM) H+-ATPase plays a major role during the growth and development of a plant. It is also involved in plant resistance to a variety of biotic and abiotic factors, including salt stress. The PM H+-ATPase gene family has been well characterized in Arabidopsis and other crop plants such as ric...
journal_title:Genes
pub_type: 杂志文章
doi:10.3390/genes11040361
更新日期:2020-03-27 00:00:00
abstract::Architectural proteins play key roles in genome construction and regulate the expression of many genes, albeit the modulation of genome plasticity by these proteins is largely unknown. A critical screening of the architectural proteins in five crop species, viz., Oryza sativa, Zea mays, Sorghum bicolor, Cicer arietinu...
journal_title:Genes
pub_type: 杂志文章
doi:10.3390/genes9040183
更新日期:2018-03-28 00:00:00
abstract::The Yangtze finless porpoise (Neophocaena asiaeorientalis ssp. asiaeorientalis) is a subspecies of the narrow-ridged finless porpoise (N. asiaeorientalis). In total, 714.28 gigabases (Gb) of raw reads were generated by whole-genome sequencing of the Yangtze finless porpoise, using an Illumina HiSeq 2000 platform. Afte...
journal_title:Genes
pub_type: 杂志文章
doi:10.3390/genes9040213
更新日期:2018-04-16 00:00:00
abstract::The TDP1 (tyrosyl-DNA phosphodiesterase 1) enzyme removes the non-specific covalent intermediates between topoisomerase I and DNA, thus playing a crucial role in preventing DNA damage. While mammals possess only one TDP1 gene, in plants two genes (TDP1α and TDP1β) are present constituting a small gene subfamily. These...
journal_title:Genes
pub_type: 杂志文章
doi:10.3390/genes11121465
更新日期:2020-12-07 00:00:00
abstract::The study of DNA to predict externally visible characteristics (EVCs) and the biogeographical ancestry (BGA) from unknown samples is gaining relevance in forensic genetics. Technical developments in Massively Parallel Sequencing (MPS) enable the simultaneous analysis of hundreds of DNA markers, which improves successf...
journal_title:Genes
pub_type: 杂志文章
doi:10.3390/genes11060708
更新日期:2020-06-26 00:00:00
abstract::Induced point mutations are important genetic resources for their ability to create hypo- and hypermorphic alleles that are useful for understanding gene functions and breeding. However, such mutant populations have only been developed for a few temperate maize varieties, mainly B73 and W22, yet no tropical maize inbr...
journal_title:Genes
pub_type: 杂志文章
doi:10.3390/genes11030281
更新日期:2020-03-06 00:00:00