An efficient system composed of maize protoplast transfection and HPLC-MS for studying the biosynthesis and regulation of maize benzoxazinoids.

Abstract:

Background:Insect herbivory poses a major threat to maize. Benzoxazinoids are important anti-insect secondary metabolites in maize, whose biosynthetic pathway has been extensively studied. However, yet little is known about how benzoxazinoids are regulated in maize, partly due to lack of mutant resources and recalcitrance to genetic transformation. Transient systems based on mesophyll- or cultured cell-derived protoplasts have been exploited in several plant species and have become a powerful tool for rapid or high-throughput assays of gene functions. Nevertheless, these systems have not been exploited to study the regulation of secondary metabolites. Results:A protocol for isolation of protoplasts from etiolated maize seedlings and efficient transfection was optimized. Furthermore, a 10-min-run-time and highly sensitive HPLC-MS method was established to rapidly detect and quantify maize benzoxazinoids. Coupling maize protoplast transfection and HPLC-MS, we screened a few genes potentially regulating benzoxazinoid biosynthesis using overexpression or silencing by artificial microRNA technology. Conclusions:Combining the power of maize protoplast transfection and HPLC-MS analysis, this method allows rapid screening for the regulatory and biosynthetic genes of maize benzoxazinoids in protoplasts, before the candidates are selected for in planta functional analyses. This method can also be applied to study the biosynthesis and regulation of other secondary metabolites in maize and secondary metabolites in other plant species, including those not amenable to transformation.

journal_name

Plant Methods

journal_title

Plant methods

authors

Gao L,Shen G,Zhang L,Qi J,Zhang C,Ma C,Li J,Wang L,Malook SU,Wu J

doi

10.1186/s13007-019-0529-2

subject

Has Abstract

pub_date

2019-11-28 00:00:00

pages

144

issn

1746-4811

pii

529

journal_volume

15

pub_type

杂志文章
  • A new image-based tool for the high throughput phenotyping of pollen viability: evaluation of inter- and intra-cultivar diversity in grapevine.

    abstract:Background:Low pollen viability may limit grapevine yield under certain conditions, causing relevant economic losses to grape-growers. It is usually evaluated by the quantification of the number of viable and non-viable pollen grains that are present in a sample after an adequate pollen grain staining procedure. Althou...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/s13007-017-0267-2

    authors: Tello J,Montemayor MI,Forneck A,Ibáñez J

    更新日期:2018-01-09 00:00:00

  • Protocol: An improved high-throughput method for generating tissue samples in 96-well format for plant genotyping (Ice-Cap 2.0).

    abstract:BACKGROUND:We previously developed a high-throughput system called 'Ice-Cap' for growing Arabidopsis seedlings in a 96-well format and rapidly collecting tissue for subsequent DNA extraction and genotyping. While the originally described Ice-Cap method is an effective tool for high-throughput genotyping, one shortcomin...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/1746-4811-3-8

    authors: Clark KA,Krysan PJ

    更新日期:2007-06-12 00:00:00

  • Fast virtual histology using X-ray in-line phase tomography: application to the 3D anatomy of maize developing seeds.

    abstract:BACKGROUND:Despite increasing demand, imaging the internal structure of plant organs or tissues without the use of transgenic lines expressing fluorescent proteins remains a challenge. Techniques such as magnetic resonance imaging, optical projection tomography or X-ray absorption tomography have been used with various...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/s13007-015-0098-y

    authors: Rousseau D,Widiez T,Di Tommaso S,Rositi H,Adrien J,Maire E,Langer M,Olivier C,Peyrin F,Rogowsky P

    更新日期:2015-12-18 00:00:00

  • Striga parasitizes transgenic hairy roots of Zea mays and provides a tool for studying plant-plant interactions.

    abstract:BACKGROUND:Striga species are noxious root hemi-parasitic weeds that debilitate cereal production in sub-Saharan Africa (SSA). Control options for Striga are limited and developing Striga resistant crop germplasm is regarded as the best and most sustainable control measure. Efforts to improve germplasm for Striga resis...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/1746-4811-8-20

    authors: Runo S,Macharia S,Alakonya A,Machuka J,Sinha N,Scholes J

    更新日期:2012-06-21 00:00:00

  • Monitoring leaf water content with THz and sub-THz waves.

    abstract::Terahertz technology is still an evolving research field that attracts scientists with very different backgrounds working on a wide range of subjects. In the past two decades, it has been demonstrated that terahertz technology can provide a non-invasive tool for measuring and monitoring the water content of leaves and...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/s13007-015-0057-7

    authors: Gente R,Koch M

    更新日期:2015-03-06 00:00:00

  • An in vitro protocol for rapidly assessing the effects of antimicrobial compounds on the unculturable bacterial plant pathogen, Candidatus Liberibacter asiaticus.

    abstract:Background:Most bacteria are not culturable, but can be identified through molecular methods such as metagenomics studies. Due to specific metabolic requirements and symbiotic relationships, these bacteria cannot survive on typical laboratory media. Many economically and medically important bacteria are unculturable; i...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/s13007-019-0465-1

    authors: Krystel J,Shi Q,Shaw J,Gupta G,Hall D,Stover E

    更新日期:2019-07-31 00:00:00

  • A procedure for localisation and electrophysiological characterisation of ion channels heterologously expressed in a plant context.

    abstract:BACKGROUND:In silico analyses based on sequence similarities with animal channels have identified a large number of plant genes likely to encode ion channels. The attempts made to characterise such putative plant channels at the functional level have most often relied on electrophysiological analyses in classical expre...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/1746-4811-1-14

    authors: Hosy E,Duby G,Véry AA,Costa A,Sentenac H,Thibaud JB

    更新日期:2005-12-19 00:00:00

  • Development of an innovative and sustainable one-step method for rapid plant DNA isolation for targeted PCR using magnetic ionic liquids.

    abstract:Background:Nowadays, there is an increasing demand for fast and reliable plant biomolecular analyses. Conventional methods for the isolation of nucleic acids are time-consuming and require multiple and often non-automatable steps to remove cellular interferences, with consequence that sample preparation is the major bo...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/s13007-019-0408-x

    authors: Marengo A,Cagliero C,Sgorbini B,Anderson JL,Emaus MN,Bicchi C,Bertea CM,Rubiolo P

    更新日期:2019-03-09 00:00:00

  • Parametric mapping of cellular morphology in plant tissue sections by gray level granulometry.

    abstract:Background:The cellular morphology of plant organs is strongly related to other physical properties such as shape, size, growth, mechanical properties or chemical composition. Cell morphology often vary depending on the type of tissue, or on the distance to a specific tissue. A common challenge in quantitative plant hi...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/s13007-020-00603-7

    authors: Legland D,Guillon F,Devaux MF

    更新日期:2020-05-06 00:00:00

  • Targeted parallel sequencing of large genetically-defined genomic regions for identifying mutations in Arabidopsis.

    abstract:: Large-scale genetic screens in Arabidopsis are a powerful approach for molecular dissection of complex signaling networks. However, map-based cloning can be time-consuming or even hampered due to low chromosomal recombination. Current strategies using next generation sequencing for molecular identification of mutatio...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/1746-4811-8-12

    authors: Liu KH,McCormack M,Sheen J

    更新日期:2012-03-30 00:00:00

  • High-throughput quantification of more than 100 primary- and secondary-metabolites, and phytohormones by a single solid-phase extraction based sample preparation with analysis by UHPLC-HESI-MS/MS.

    abstract:BACKGROUND:Plant metabolites are commonly functionally classified, as defense- or growth-related phytohormones, primary and specialized metabolites, and so forth. Analytical procedures for the quantifications of these metabolites are challenging because the metabolites can vary over several orders of magnitude in conce...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/s13007-016-0130-x

    authors: Schäfer M,Brütting C,Baldwin IT,Kallenbach M

    更新日期:2016-05-26 00:00:00

  • Blue-native PAGE in plants: a tool in analysis of protein-protein interactions.

    abstract::Intact protein complexes can be separated by apparent molecular mass using a standard polyacrylamide gel electrophoresis system combining mild detergents and the dye Coomassie Blue. Referring to the blue coloured gel and the gentle method of solubilization yielding native and enzymatically active protein complexes, th...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/1746-4811-1-11

    authors: Eubel H,Braun HP,Millar AH

    更新日期:2005-11-16 00:00:00

  • Rapid fluorescent reporter quantification by leaf disc analysis and its application in plant-virus studies.

    abstract:BACKGROUND:Fluorescent proteins are extraordinary tools for biology studies due to their versatility; they are used extensively to improve comprehension of plant-microbe interactions. The viral infection process can easily be tracked and imaged in a plant with fluorescent protein-tagged viruses. In plants, fluorescent ...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/1746-4811-10-22

    authors: Pasin F,Kulasekaran S,Natale P,Simón-Mateo C,García JA

    更新日期:2014-07-05 00:00:00

  • A simplified method to isolate rice mitochondria.

    abstract:BACKGROUND:Mitochondria play critical roles in plant growth, development and stress tolerance. Numerous researchers have carried out studies on the plant mitochondrial genome structure, mitochondrial metabolism and nuclear-cytoplasmic interactions. However, classical plant mitochondria extraction methods are time-consu...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/s13007-020-00690-6

    authors: Xu Y,Li X,Huang J,Peng L,Luo D,Zhang Q,Dan Z,Xiao H,Yang F,Hu J

    更新日期:2020-11-04 00:00:00

  • Improving the sorting efficiency of maize haploid kernels using an NMR-based method with oil content double thresholds.

    abstract:BACKGROUND:Maize haploid breeding technology can be used to rapidly develop homozygous lines, significantly shorten the breeding cycle and improve breeding efficiency. Rapid and accurate sorting haploid kernels is a prerequisite for the large-scale application of this technology. At present, the automatic haploid sorti...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/s13007-020-00703-4

    authors: Qu Y,Liu Z,Zhang Y,Yang J,Li H

    更新日期:2021-01-06 00:00:00

  • A new method for functional analysis of plastid EMBRYO-DEFECTIVE PPR genes by efficiently constructing cosuppression lines in Arabidopsis.

    abstract:BACKGROUND:Pentatricopeptide-repeat proteins (PPRs) characterized by tandem arrays of a degenerate 35-amino-acid repeat (PPR motif) can bind a single strand RNA and regulate organelle gene expression at the post-transcriptional level, including RNA cleavage, splicing, editing and stability etc. PPRs are conserved in al...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/s13007-020-00696-0

    authors: Chen J,Zhu H,Huang J,Huang W

    更新日期:2020-11-18 00:00:00

  • Fluctuating light experiments and semi-automated plant phenotyping enabled by self-built growth racks and simple upgrades to the IMAGING-PAM.

    abstract:Background:Over the last years, several plant science labs have started to employ fluctuating growth light conditions to simulate natural light regimes more closely. Many plant mutants reveal quantifiable effects under fluctuating light despite being indistinguishable from wild-type plants under standard constant light...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/s13007-019-0546-1

    authors: Schneider D,Lopez LS,Li M,Crawford JD,Kirchhoff H,Kunz HH

    更新日期:2019-12-23 00:00:00

  • A rapid phenotyping method for adult plant resistance to leaf rust in wheat.

    abstract:BACKGROUND:Leaf rust (LR), caused by Puccinia triticina and is an important disease of wheat (Triticum aestivum L.). The most sustainable method for controlling rust diseases is deployment of cultivars incorporating adult plant resistance (APR). However, phenotyping breeding populations or germplasm collections for res...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/s13007-016-0117-7

    authors: Riaz A,Periyannan S,Aitken E,Hickey L

    更新日期:2016-03-02 00:00:00

  • Convergence of developmental mutants into a single tomato model system: 'Micro-Tom' as an effective toolkit for plant development research.

    abstract:BACKGROUND:The tomato (Solanum lycopersicum L.) plant is both an economically important food crop and an ideal dicot model to investigate various physiological phenomena not possible in Arabidopsis thaliana. Due to the great diversity of tomato cultivars used by the research community, it is often difficult to reliably...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/1746-4811-7-18

    authors: Carvalho RF,Campos ML,Pino LE,Crestana SL,Zsögön A,Lima JE,Benedito VA,Peres LE

    更新日期:2011-06-29 00:00:00

  • FRET-SLiM on native autofluorescence: a fast and reliable method to study interactions between fluorescent probes and lignin in plant cell wall.

    abstract:Background:Lignocellulosic biomass is a complex network of polymers making the cell walls of plants. It represents a feedstock of sustainable resources to be converted into fuels, chemicals and materials. Because of its complex architecture, lignocellulose is a recalcitrant material that necessitates some pretreatments...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/s13007-018-0342-3

    authors: Terryn C,Paës G,Spriet C

    更新日期:2018-08-27 00:00:00

  • A rapid, inexpensive, and semi-quantitative method for determining pollen tube extension using fluorescence.

    abstract:BACKGROUND:Pollen tubes extend rapidly when pollen grains are incubated in defined media. Tube extension requires many critical functions of plant cells including molecular signaling, cytoskeleton remodeling, secretion, and cell wall synthesis. Consequently, pollen tube growth has been established as a way to conduct p...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/1746-4811-10-3

    authors: Hartman E,Levy C,Kern DM,Johnson MA,Basu A

    更新日期:2014-01-23 00:00:00

  • A software tool for the input and management of phenotypic data using personal digital assistants and other mobile devices.

    abstract:BACKGROUND:Plant breeding and genetics demand fast, exact and reproducible phenotyping. Efficient statistical evaluation of phenotyping data requires standardised data storage ensuring long-term data availability while maintaining intellectual property rights. This is state of the art at phenomics centres, which, howev...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/s13007-015-0069-3

    authors: Köhl K,Gremmels J

    更新日期:2015-04-07 00:00:00

  • Large scale genome skimming from herbarium material for accurate plant identification and phylogenomics.

    abstract:Background:Herbaria are valuable sources of extensive curated plant material that are now accessible to genetic studies because of advances in high-throughput, next-generation sequencing methods. As an applied assessment of large-scale recovery of plastid and ribosomal genome sequences from herbarium material for plant...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/s13007-019-0534-5

    authors: Nevill PG,Zhong X,Tonti-Filippini J,Byrne M,Hislop M,Thiele K,van Leeuwen S,Boykin LM,Small I

    更新日期:2020-01-04 00:00:00

  • A phenol/chloroform-free method to extract nucleic acids from recalcitrant, woody tropical species for gene expression and sequencing.

    abstract:Background:Woody tropical plants contain high levels of complex organic compounds that inhibit the chemical procedures needed to extract RNA or DNA, thus compromising downstream applications such as RNA sequencing and analysis of gene expression. To overcome this issue, researchers must use extraction protocols using C...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/s13007-019-0447-3

    authors: Barbier FF,Chabikwa TG,Ahsan MU,Cook SE,Powell R,Tanurdzic M,Beveridge CA

    更新日期:2019-06-05 00:00:00

  • Expanding the bioluminescent reporter toolkit for plant science with NanoLUC.

    abstract:Background:Protein data over circadian time scale is scarce for clock transcription factors. Further work in this direction is required for refining quantitative clock models. However, gathering highly resolved dynamics of low-abundance transcription factors has been a major challenge in the field. In this work we prov...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/s13007-019-0454-4

    authors: Urquiza-García U,Millar AJ

    更新日期:2019-07-08 00:00:00

  • Genotype-independent Agrobacterium rhizogenes-mediated root transformation of chickpea: a rapid and efficient method for reverse genetics studies.

    abstract:Background:Chickpea (Cicer arietinum L.), an important legume crop is one of the major source of dietary protein. Developing an efficient and reproducible transformation method is imperative to expedite functional genomics studies in this crop. Here, we present an optimized and detailed procedure for Agrobacterium rhiz...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/s13007-018-0315-6

    authors: Aggarwal PR,Nag P,Choudhary P,Chakraborty N,Chakraborty S

    更新日期:2018-07-06 00:00:00

  • Recent achievements obtained by chloroplast transformation.

    abstract::Chloroplasts play a great role for sustained wellbeing of life on the planet. They have the power and raw materials that can be used as sophisticated biological factories. They are rich in energy as they have lots of pigment-protein complexes capable of collecting sunlight, in sugar produced by photosynthesis and in m...

    journal_title:Plant methods

    pub_type: 杂志文章,评审

    doi:10.1186/s13007-017-0179-1

    authors: Adem M,Beyene D,Feyissa T

    更新日期:2017-04-19 00:00:00

  • Chlorothalonil: an effective bacteriostatic agent for bud induction of Acacia auriculiformis under open condition (non-axenic).

    abstract:Background:Open tissue culture technique could be simplified by using different bacteriostatic agents. There is a great difference in the bacteriostatic effects of different antimicrobial agents on various explants. However, there is no report about the effective bacteriostatic agent for open tissue culture of Acacia a...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/s13007-019-0390-3

    authors: Huang L,Wang H,Shahid MQ,Zeng B

    更新日期:2019-01-25 00:00:00

  • SSHscreen and SSHdb, generic software for microarray based gene discovery: application to the stress response in cowpea.

    abstract:BACKGROUND:Suppression subtractive hybridization is a popular technique for gene discovery from non-model organisms without an annotated genome sequence, such as cowpea (Vigna unguiculata (L.) Walp). We aimed to use this method to enrich for genes expressed during drought stress in a drought tolerant cowpea line. Howev...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/1746-4811-6-10

    authors: Coetzer N,Gazendam I,Oelofse D,Berger DK

    更新日期:2010-04-01 00:00:00

  • A light in the shadow: the use of Lucifer Yellow technique to demonstrate nectar reabsorption.

    abstract:BACKGROUND:Nectar reabsorption is a widely known phenomenon, related to the strategy of resource-recovery and also to maintain the nectar homeostasis at the nectary. The method currently performed to demonstrate nectar being reabsorbed involves the use of radioactive tracers applied to the nectary. Although this method...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/1746-4811-9-20

    authors: Cardoso-Gustavson P,Robazzi Bignelli Valente Aguiar JM,Ricardo Pansarin E,de Barros F

    更新日期:2013-06-19 00:00:00