The horizontal gene transfer of Agrobacterium T-DNAs into the series Batatas (Genus Ipomoea) genome is not confined to hexaploid sweetpotato.

Abstract:

:The discovery of the insertion of IbT-DNA1 and IbT-DNA2 into the cultivated (hexaploid) sweetpotato [Ipomoea batatas (L.) Lam.] genome constitutes a clear example of an ancient event of Horizontal Gene Transfer (HGT). However, it remains unknown whether the acquisition of both IbT-DNAs by the cultivated sweetpotato occurred before or after its speciation. Therefore, this study aims to evaluate the presence of IbT-DNAs in the genomes of sweetpotato's wild relatives belonging to the taxonomic group series Batatas. Both IbT-DNA1 and IbT-DNA2 were found in tetraploid I. batatas (L.) Lam. and had highly similar sequences and at the same locus to those found in the cultivated sweetpotato. Moreover, IbT-DNA1 was also found in I. cordatotriloba and I. tenuissima while IbT-DNA2 was detected in I. trifida. This demonstrates that genome integrated IbT-DNAs are not restricted to the cultivated sweetpotato but are also present in tetraploid I. batatas and other related species.

journal_name

Sci Rep

journal_title

Scientific reports

authors

Quispe-Huamanquispe DG,Gheysen G,Yang J,Jarret R,Rossel G,Kreuze JF

doi

10.1038/s41598-019-48691-3

subject

Has Abstract

pub_date

2019-08-29 00:00:00

pages

12584

issue

1

issn

2045-2322

pii

10.1038/s41598-019-48691-3

journal_volume

9

pub_type

杂志文章
  • Transaminase levels reflect disease severity in children ventilated for respiratory syncytial virus (RSV) bronchiolitis.

    abstract::Bronchiolitis, often caused by respiratory syncytial virus (RSV), is the commonest cause of hospitalisation in infancy. Serum transaminases are sometimes raised in children with bronchiolitis. We tested the hypothesis that raised transaminases are associated with increased disease severity in children ventilated for b...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-20292-6

    authors: Thorburn K,Fulton C,King C,Ramaneswaran D,Alammar A,McNamara PS

    更新日期:2018-01-29 00:00:00

  • De novo draft assembly of the Botrylloides leachii genome provides further insight into tunicate evolution.

    abstract::Tunicates are marine invertebrates that compose the closest phylogenetic group to the vertebrates. These chordates present a particularly diverse range of regenerative abilities and life-history strategies. Consequently, tunicates provide an extraordinary perspective into the emergence and diversity of these traits. H...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-23749-w

    authors: Blanchoud S,Rutherford K,Zondag L,Gemmell NJ,Wilson MJ

    更新日期:2018-04-03 00:00:00

  • Lanthanum Prolongs Vase Life of Cut Tulip Flowers by Increasing Water Consumption and Concentrations of Sugars, Proteins and Chlorophylls.

    abstract::We evaluated the effect of separately adding two sources of lanthanum (La), LaCl3 and La(NO3)3 × 6H2O at a concentration of 40 µM each, to the preservative solution of 15 cut tulip flower varieties. Ascorbic acid (AsA; 0.2 g/L) was used as a reference solution, while distilled water was used as control. The variety La...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-61200-1

    authors: Gómez-Merino FC,Ramírez-Martínez M,Castillo-González AM,Trejo-Téllez LI

    更新日期:2020-03-06 00:00:00

  • Design and Fabrication of Low-cost Microfluidic Channel for Biomedical Application.

    abstract::This paper presents the design, simulation and low-cost fabrication of microfluidic channel for biomedical application. Channel is fabricated using soft lithography technique. Printed Circuit Board (PCB) is used to make the master for the channel. Channel pattern is transferred on PCB plate using toner transfer techni...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-65995-x

    authors: Tiwari SK,Bhat S,Mahato KK

    更新日期:2020-06-08 00:00:00

  • ANGPTL2 increases bone metastasis of breast cancer cells through enhancing CXCR4 signaling.

    abstract::Bone metastasis of breast cancer cells is a major concern, as it causes increased morbidity and mortality in patients. Bone tissue-derived CXCL12 preferentially recruits breast cancer cells expressing CXCR4 to bone metastatic sites. Thus, understanding how CXCR4 expression is regulated in breast cancer cells could sug...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep09170

    authors: Masuda T,Endo M,Yamamoto Y,Odagiri H,Kadomatsu T,Nakamura T,Tanoue H,Ito H,Yugami M,Miyata K,Morinaga J,Horiguchi H,Motokawa I,Terada K,Morioka MS,Manabe I,Iwase H,Mizuta H,Oike Y

    更新日期:2015-03-16 00:00:00

  • Anti-HERV-WEnv antibodies are correlated with seroreactivity against Mycobacterium avium subsp. paratuberculosis in children and youths at T1D risk.

    abstract::Recent evidence points at the role that human endogenous retroviruses (HERVs) may play through the activation of genes integrated across the human genome. Although a variety of genetic/epigenetic mechanisms maintain most HERVs silenced, independent environmental stimuli including infections may transactivate endogenou...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-42788-5

    authors: Niegowska M,Wajda-Cuszlag M,Stępień-Ptak G,Trojanek J,Michałkiewicz J,Szalecki M,Sechi LA

    更新日期:2019-04-18 00:00:00

  • An eigenvalue transformation technique for predicting drug-target interaction.

    abstract::The prediction of drug-target interactions is a key step in the drug discovery process, which serves to identify new drugs or novel targets for existing drugs. However, experimental methods for predicting drug-target interactions are expensive and time-consuming. Therefore, the in silico prediction of drug-target inte...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep13867

    authors: Kuang Q,Xu X,Li R,Dong Y,Li Y,Huang Z,Li Y,Li M

    更新日期:2015-09-09 00:00:00

  • The "Vessel through Strait" Sign is a Signature Radiological Sign for the Diagnosis of Left Hepatic Artery Variation.

    abstract::An aberrant artery (AA) can frequently be observed coursing through the fissure for the ligamentum venosum (FLV) which was termed the "vessel through strait" sign (VTSS) by us. Fundamental data including the incidence, anatomical composition and clinical significance of VTSS and the AAs composing VTSS are still lackin...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep23922

    authors: Rong G,Wang Z,Wang X,Yu Q,Zhou L,Wang H,Zhang J,Dong J,Ma W,An W,Ren H,Zeng Z,Lu Y,Li Y

    更新日期:2016-04-04 00:00:00

  • Alpha7 nicotinic acetylcholine receptor is required for amyloid pathology in brain endothelial cells induced by Glycoprotein 120, methamphetamine and nicotine.

    abstract::One of the most challenging issues in HIV-associated neurocognitive disorders (HAND) caused by HIV-1 virotoxins and drug abuse is the lack of understanding the underlying mechanisms that are commonly associated with disorders of the blood-brain barrier (BBB), which mainly consists of brain microvascular endothelial ce...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep40467

    authors: Liu L,Yu J,Li L,Zhang B,Liu L,Wu CH,Jong A,Mao DA,Huang SH

    更新日期:2017-01-11 00:00:00

  • Human Platelet Lysate versus Fetal Calf Serum: These Supplements Do Not Select for Different Mesenchymal Stromal Cells.

    abstract::Culture medium of mesenchymal stromal cells (MSCs) is usually supplemented with either human platelet lysate (HPL) or fetal calf serum (FCS). Many studies have demonstrated that proliferation and cellular morphology are affected by these supplements - it is therefore important to determine if they favor outgrowth of d...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-05207-1

    authors: Fernandez-Rebollo E,Mentrup B,Ebert R,Franzen J,Abagnale G,Sieben T,Ostrowska A,Hoffmann P,Roux PF,Rath B,Goodhardt M,Lemaitre JM,Bischof O,Jakob F,Wagner W

    更新日期:2017-07-11 00:00:00

  • 14-3-3 signal adaptor and scaffold proteins mediate GPCR trafficking.

    abstract::Receptor trafficking is pivotal for the temporal and spatial control of GPCR signaling and is regulated by multiple cellular proteins. We provide evidence that GPCRs interact with 14-3-3 signal adaptor/scaffold proteins and that this interaction regulates receptor trafficking in two ways. We found GPCR/14-3-3 interact...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-47478-w

    authors: Yuan L,Barbash S,Kongsamut S,Eishingdrelo A,Sakmar TP,Eishingdrelo H

    更新日期:2019-08-01 00:00:00

  • Novel investigation of perovskite membrane based electrochemical nitric oxide control phenomenon.

    abstract::The combustion of hydrocarbon fuels within the automotive industry results in harmful and reactive incomplete combustion byproducts. Specifically, nitric oxide emissions (NO) lead to increased smog, acid rain, climate change, and respiratory inflammation within the population [Nitrogen Dioxide | American Lung Associat...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-75360-7

    authors: Welles TS,Ahn J

    更新日期:2020-10-30 00:00:00

  • The PRC2-binding long non-coding RNAs in human and mouse genomes are associated with predictive sequence features.

    abstract::Recently, long non-coding RNAs (lncRNAs) have emerged as an important class of molecules involved in many cellular processes. One of their primary functions is to shape epigenetic landscape through interactions with chromatin modifying proteins. However, mechanisms contributing to the specificity of such interactions ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep41669

    authors: Tu S,Yuan GC,Shao Z

    更新日期:2017-01-31 00:00:00

  • Prevalence of normal weight central obesity among Thai healthcare providers and their association with CVD risk: a cross-sectional study.

    abstract::This study aims to determine the prevalence of health personnel with normal weight central obesity and to investigate whether this group had higher cardiovascular disease (CVD) risk factors than those of the people with normal weight and without central obesity. A waist-to-height ratio was calculated as waist circumfe...

    journal_title:Scientific reports

    pub_type: 临床试验,杂志文章

    doi:10.1038/srep37100

    authors: Thaikruea L,Thammasarot J

    更新日期:2016-11-16 00:00:00

  • Compatibility Study of Danggui Buxue Tang on Chemical Ingredients, Angiogenesis and Endothelial Function.

    abstract::Danggui Buxue Tang (DBT) is a classic Chinese herbal formula which consists of Astragali mongholici Radix and Angelica sinensis Radix (ASR). For chemical ingredients, HPLC were performed. Results showed compared with single herbs, DBT decoction could promote the dissolution of ingredients such as ferulic acid and caly...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep45111

    authors: Lin PL,Li ZC,Xie RF,Wang YH,Zhou X

    更新日期:2017-03-22 00:00:00

  • Angulin-2/ILDR1, a tricellular tight junction protein, does not affect water transport in the mouse large intestine.

    abstract::Angulin-2/ILDR1 is a member of the angulin protein family, which is exclusively expressed at tricellular tight junctions in epithelia. Tricellular tight junctions are found where three cells meet and where three bicellular tight junction strands converge. Tricellular tight junctions are thought to be important for par...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-67319-5

    authors: Hempstock W,Sugioka S,Ishizuka N,Sugawara T,Furuse M,Hayashi H

    更新日期:2020-06-25 00:00:00

  • Crosstalk between Hedgehog pathway and energy pathways in human adipose-derived stem cells: A deep sequencing analysis of polysome-associated RNA.

    abstract::Adult stem cells are considered promising candidates for cellular therapies due to their capacity to differentiate and self-renew. Differentiation leads to changes in the metabolism, structure, and gene expression patterns of cells. Hedgehog is one of the pathways that is involved in the enhancement of osteogenesis an...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-26533-y

    authors: Shigunov P,Balvedi LT,Santos MDM,Herai RH,de Aguiar AM,Dallagiovanna B

    更新日期:2018-05-30 00:00:00

  • DNA methylation of the INSR gene as a mediator of the association between prenatal exposure to famine and adulthood waist circumference.

    abstract::The aims of this study were to explore whether DNA methylation at INSR and IGF2 mediated the association of prenatal exposure to the Chinese great famine with adulthood waist circumference (WC) and BMI. A total of 235 subjects were selected into the present study from severely affected province and a neighbor province...

    journal_title:Scientific reports

    pub_type: 历史文章,杂志文章

    doi:10.1038/s41598-020-69120-w

    authors: Wang Z,Song J,Li C,Li Y,Shen L,Dong B,Zou Z,Ma J

    更新日期:2020-07-22 00:00:00

  • Neck lymph node status on survival of regionally recurrent or persistent nasopharyngeal carcinoma.

    abstract::The aim of this study was to evaluate the impact of lymph node status from neck dissection pathological specimens on the survival for isolated regional nodal recurrence or persistence after primary treatment of nasopharyngeal carcinoma. Through a retrospective cohort study performed in an academic tertiary referral ho...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-62625-4

    authors: Yeung DCM,Yeung Z,Wong EWY,Vlantis AC,Chan JYK

    更新日期:2020-03-27 00:00:00

  • Effects of rice straw and rice straw ash on rice growth and α-diversity of bacterial community in rare-earth mining soils.

    abstract::Pot experiments were carried out to study the effects of rice straw (RS) and rice straw ash (RSA) on the growth of early rice and α-diversity of bacterial community in soils around rare earth mining areas of Xunwu and Xinfeng counties in South Jiangxi of China. The results showed that the exploitation of rare earth re...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-67160-w

    authors: Jin S,Jin W,Dong C,Bai Y,Jin D,Hu Z,Huang Y

    更新日期:2020-06-25 00:00:00

  • Transition metal sulfides grown on graphene fibers for wearable asymmetric supercapacitors with high volumetric capacitance and high energy density.

    abstract::Fiber shaped supercapacitors are promising candidates for wearable electronics because they are flexible and light-weight. However, a critical challenge of the widespread application of these energy storage devices is their low cell voltages and low energy densities, resulting in limited run-time of the electronics. H...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep26890

    authors: Cai W,Lai T,Lai J,Xie H,Ouyang L,Ye J,Yu C

    更新日期:2016-06-01 00:00:00

  • Transparent Display using a quasi-array of Si-SiO2 Core-Shell Nanoparticles.

    abstract::A novel type of transparent monitor with high-resolution images based on Si-SiO2 core-shell nanoparticles is presented in this contribution. In this monitor, a quasi-array of nanoparticles was used to obtain a very sharp scattering profile. For this purpose, the Si-SiO2 nanoparticles were synthesized and with controll...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-38771-9

    authors: Dolatyari M,Jafari A,Rostami A,Klein A

    更新日期:2019-02-19 00:00:00

  • Increased incidence of cytomegalovirus coinfection in HCV-infected patients with late liver fibrosis is associated with dysregulation of JAK-STAT pathway.

    abstract::Herein, we examined the association between cytomegalovirus (CMV) coinfection and the progression of liver fibrosis in hepatitis C virus (HCV) infection, and investigated the effect of CMV coinfection on JAK-STAT pathway. CMV DNAemia was detected by PCR in DNA from controls (n = 120), and HCV patients with early (F0-F...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-10604-7

    authors: Ibrahim MK,Khedr A,Bader El Din NG,Khairy A,El Awady MK

    更新日期:2017-09-04 00:00:00

  • Dramatic pressure-driven enhancement of bulk skyrmion stability.

    abstract::The recent discovery of magnetic skyrmion lattices initiated a surge of interest in the scientific community. Several novel phenomena have been shown to emerge from the interaction of conducting electrons with the skyrmion lattice, such as a topological Hall-effect and a spin-transfer torque at ultra-low current densi...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep21347

    authors: Levatić I,Popčević P,Šurija V,Kruchkov A,Berger H,Magrez A,White JS,Rønnow HM,Živković I

    更新日期:2016-02-19 00:00:00

  • Analysis of expression of the PD-1/PD-L1 immune checkpoint system and its prognostic impact in gastroenteropancreatic neuroendocrine tumors.

    abstract::The immune checkpoint based therapy targeting the programmed death-1 (PD-1) receptor and its PD-L1 ligand has recently been approved for the therapy of different malignant conditions, but not yet for gastroenteropancreatic neuroendocrine tumors (GEP-NETs). In this context, we evaluated the expression of PD-1 and PD-L1...

    journal_title:Scientific reports

    pub_type: 临床试验,杂志文章,多中心研究

    doi:10.1038/s41598-018-36129-1

    authors: Sampedro-Núñez M,Serrano-Somavilla A,Adrados M,Cameselle-Teijeiro JM,Blanco-Carrera C,Cabezas-Agricola JM,Martínez-Hernández R,Martín-Pérez E,Muñoz de Nova JL,Díaz JÁ,García-Centeno R,Caneiro-Gómez J,Abdulkader I,González-Amaro

    更新日期:2018-12-13 00:00:00

  • Circulating vitamin D binding protein, total, free and bioavailable 25-hydroxyvitamin D and risk of colorectal cancer.

    abstract::Epidemiological investigation have suggested that there is a significantly inverse association between circulating 25-hydroxyvitamin D (25(OH)D) and the risk for developing colorectal cancer (CRC) in humans. However, little is known about the role of vitamin D binding protein (VDBP) in colorectal carcinogenesis. Blood...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep07956

    authors: Ying HQ,Sun HL,He BS,Pan YQ,Wang F,Deng QW,Chen J,Liu X,Wang SK

    更新日期:2015-01-22 00:00:00

  • Ubiquitin C-terminal hydrolase37 regulates Tcf7 DNA binding for the activation of Wnt signalling.

    abstract::The Tcf/Lef family of transcription factors mediates the Wnt/β-catenin pathway that is involved in a wide range of biological processes, including vertebrate embryogenesis and diverse pathogenesis. Post-translational modifications, including phosphorylation, sumoylation and acetylation, are known to be important for t...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep42590

    authors: Han W,Lee H,Han JK

    更新日期:2017-02-15 00:00:00

  • Modelling of substrate access and substrate binding to cephalosporin acylases.

    abstract::Semisynthetic cephalosporins are widely used antibiotics currently produced by different chemical steps under harsh conditions, which results in a considerable amount of toxic waste. Biocatalytic synthesis by the cephalosporin acylase from Pseudomonas sp. strain N176 is a promising alternative. Despite intensive engin...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-48849-z

    authors: Ferrario V,Fischer M,Zhu Y,Pleiss J

    更新日期:2019-08-27 00:00:00

  • A Reduction-Based Sensor for Acrolein Conjugates with the Inexpensive Nitrobenzene as an Alternative to Monoclonal Antibody.

    abstract::Acrolein, a highly toxic α, β-unsaturated aldehyde, has been a longstanding key biomarker associated with a range of disorders related to oxidative stresses. One of the most promising methods for detecting acrolein involves the use of antibodies that can recognize the acrolein-lysine conjugate, 3-formyl-3, 4-dehydropi...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep35872

    authors: Takamatsu M,Fukase K,Oka R,Kitazume S,Taniguchi N,Tanaka K

    更新日期:2016-10-26 00:00:00

  • Elevated temperature, but not decreased pH, impairs reproduction in a temperate fish.

    abstract::Fish reproductive success is linked to the ability of couples to mate and produce clutches that successfully hatch. Environmental stressors like high temperature and low pH can jeopardize this energetically costly process. In this study, exposure to high temperature and low pH was tested on a marine temperate species,...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-77906-1

    authors: Lopes AF,Faria AM,Dupont S

    更新日期:2020-11-30 00:00:00