Five main phases of landscape degradation revealed by a dynamic mesoscale model analysing the splitting, shrinking, and disappearing of habitat patches.

Abstract:

:The ecological consequences of habitat loss and fragmentation have been intensively studied on a broad, landscape-wide scale, but have less been investigated on the finer scale of individual habitat patches, especially when considering dynamic turnovers in the habitability of sites. We study changes to individual patches from the perspective of the inhabitant organisms requiring a minimum area for survival. With patches given by contiguous assemblages of discrete habitat sites, the removal of a single site necessarily causes one of the following three elementary local events in the affected patch: splitting into two or more pieces, shrinkage without splitting, or complete disappearance. We investigate the probabilities of these events and the effective size of the habitat removed by them from the population's living area as the habitat landscape gradually transitions from pristine to totally destroyed. On this basis, we report the following findings. First, we distinguish four transitions delimiting five main phases of landscape degradation: (1) when there is only a little habitat loss, the most frequent event is the shrinkage of the spanning patch; (2) with more habitat loss, splitting becomes significant; (3) splitting peaks; (4) the remaining patches shrink; and (5) finally, they gradually disappear. Second, organisms that require large patches are especially sensitive to phase 3. This phase emerges at a value of habitat loss that is well above the percolation threshold. Third, the effective habitat loss caused by the removal of a single habitat site can be several times higher than the actual habitat loss. For organisms requiring only small patches, this amplification of losses is highest during phase 4 of the landscape degradation, whereas for organisms requiring large patches, it peaks during phase 3.

journal_name

Sci Rep

journal_title

Scientific reports

authors

Kun Á,Oborny B,Dieckmann U

doi

10.1038/s41598-019-47497-7

subject

Has Abstract

pub_date

2019-07-31 00:00:00

pages

11149

issue

1

issn

2045-2322

pii

10.1038/s41598-019-47497-7

journal_volume

9

pub_type

杂志文章
  • Author Correction: Osmotic modulation of chromatin impacts on efficiency and kinetics of cell fate modulation.

    abstract::A correction to this article has been published and is linked from the HTML and PDF versions of this paper. The error has been fixed in the paper. ...

    journal_title:Scientific reports

    pub_type: 已发布勘误

    doi:10.1038/s41598-018-29328-3

    authors: Lima AF,May G,Díaz-Colunga J,Pedreiro S,Paiva A,Ferreira L,Enver T,Iborra FJ,Pires das Neves R

    更新日期:2018-07-23 00:00:00

  • Soluble epoxide hydrolase inhibition decreases reperfusion injury after focal cerebral ischemia.

    abstract::Epoxyeicosatrienoic acids (EETs) are produced by cytochrome P450 epoxygenases from arachidonic acid, and their rapid metabolism is mainly through soluble epoxide hydrolase (sEH). EETs exert vasodilatory, anti-inflammatory, anti-apoptotic, and pro-angiogenic effects. Administration of sEH inhibitors before or at the on...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-23504-1

    authors: Tu R,Armstrong J,Lee KSS,Hammock BD,Sapirstein A,Koehler RC

    更新日期:2018-03-27 00:00:00

  • TP53 Arg72Pro, mortality after cancer, and all-cause mortality in 105,200 individuals.

    abstract::Rs1042522 (Arg72Pro) is a functional polymorphism of TP53. Pro72 has been associated with lower all-cause mortality and lower mortality after cancer. We hypothesized that TP53 Pro72 is associated with lower mortality after cancer, lower all-cause mortality, and with increased cancer incidence in the general population...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-00427-x

    authors: Kodal JB,Vedel-Krogh S,Kobylecki CJ,Nordestgaard BG,Bojesen SE

    更新日期:2017-03-23 00:00:00

  • Molecular mechanism of the allosteric regulation of the αγ heterodimer of human NAD-dependent isocitrate dehydrogenase.

    abstract::Human NAD-dependent isocitrate dehydrogenase catalyzes the decarboxylation of isocitrate (ICT) into α-ketoglutarate in the Krebs cycle. It exists as the α2βγ heterotetramer composed of the αβ and αγ heterodimers. Previously, we have demonstrated biochemically that the α2βγ heterotetramer and αγ heterodimer can be allo...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep40921

    authors: Ma T,Peng Y,Huang W,Ding J

    更新日期:2017-01-18 00:00:00

  • Bedrock sculpting under an active alpine glacier revealed from cosmic-ray muon radiography.

    abstract::Mountain glaciers form landscapes with U-shaped valleys, roche moutonées and overdeepenings through bedrock erosion. However, little evidence for active glacial carving has been provided particularly for areas above the Equilibrium Line Altitude (ELA) where glaciers originate. This is mainly due to our lack of informa...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-43527-6

    authors: Nishiyama R,Ariga A,Ariga T,Lechmann A,Mair D,Pistillo C,Scampoli P,Valla PG,Vladymyrov M,Ereditato A,Schlunegger F

    更新日期:2019-05-06 00:00:00

  • Bile-duct proliferation as an unexpected side-effect after AAV2-LDLR gene transfer to rabbit liver.

    abstract::Familial hypercholesterolemia (FH) is an inherited disease of lipoprotein metabolism caused by a defect in the LDL receptor (LDLR) leading to severe hypercholesterolemia, and associated with an increased risk of coronary heart disease and myocardial infarction. We have developed a gene therapy protocol for FH using AA...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-43459-1

    authors: Hytönen E,Laurema A,Kankkonen H,Miyanohara A,Kärjä V,Hujo M,Laham-Karam N,Ylä-Herttuala S

    更新日期:2019-05-06 00:00:00

  • Quantitative comparison of tumor delivery for multiple targeted nanoparticles simultaneously by multiplex ICP-MS.

    abstract::Given the rapidly expanding library of disease biomarkers and targeting agents, the number of unique targeted nanoparticles is growing exponentially. The high variability and expense of animal testing often makes it unfeasible to examine this large number of nanoparticles in vivo. This often leads to the investigation...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep05840

    authors: Elias A,Crayton SH,Warden-Rothman R,Tsourkas A

    更新日期:2014-07-28 00:00:00

  • Transcriptional repressor domain of MBD1 is intrinsically disordered and interacts with its binding partners in a selective manner.

    abstract::Methylation of DNA CpG sites is a major mechanism of epigenetic gene silencing and plays important roles in cell division, development and carcinogenesis. One of its regulators is the 64-residue C-terminal Transcriptional Repressor Domain (the TRD) of MBD1, which recruits several repressor proteins such as MCAF1, HDAC...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep04896

    authors: Hameed UF,Lim J,Zhang Q,Wasik MA,Yang D,Swaminathan K

    更新日期:2014-05-09 00:00:00

  • Fabrication of copper(II)-coated magnetic core-shell nanoparticles Fe3O4@SiO2-2-aminobenzohydrazide and investigation of its catalytic application in the synthesis of 1,2,3-triazole compounds.

    abstract::In the present work, an attempt has been made to synthesize the 1,2,3-triazole derivatives resulting from the click reaction, in a mild and green environment using the new copper(II)-coated magnetic core-shell nanoparticles Fe3O4@SiO2 modified by isatoic anhydride. The structure of the catalyst has been determined by ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-021-81632-7

    authors: Rajabi-Moghaddam H,Naimi-Jamal MR,Tajbakhsh M

    更新日期:2021-01-22 00:00:00

  • The C-terminal region of OVGP1 remodels the zona pellucida and modifies fertility parameters.

    abstract::OVGP1 is the major non-serum glycoprotein in the oviduct fluid at the time of fertilization and early embryo development. Its activity differs among species. Here, we show that the C-terminal region of recombinant OVGP1 regulates its binding to the extracellular zona pellucida and affects its activity during fertiliza...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep32556

    authors: Algarra B,Han L,Soriano-Úbeda C,Avilés M,Coy P,Jovine L,Jiménez-Movilla M

    更新日期:2016-09-07 00:00:00

  • Observation of strongly enhanced photoluminescence from inverted cone-shaped silicon nanostructures. [corrected].

    abstract::Silicon nanowires (SiNWs) attached to a wafer substrate are converted to inversely tapered silicon nanocones (SiNCs). After excitation with visible light, individual SiNCs show a 200-fold enhanced integral band-to-band luminescence as compared to a straight SiNW reference. Furthermore, the reverse taper is responsible...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep17089

    authors: Schmitt SW,Sarau G,Christiansen S

    更新日期:2015-11-26 00:00:00

  • Elevated Serum Interleukin-34 Level in Patients with Systemic Lupus Erythematosus Is Associated with Disease Activity.

    abstract::We measured the interleukin-34 (IL-34) level in sera from patients with systemic lupus erythematosus (SLE) and discoid lupus erythematosus (DLE) using an enzyme-linked immunosorbent assay (ELISA). Blood tests, including assays to determine C-reactive protein (CRP), complement (C) 3, C4, immunoglobulin (Ig) A, IgG, IgM...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-21859-z

    authors: Xie HH,Shen H,Zhang L,Cui MY,Xia LP,Lu J

    更新日期:2018-02-22 00:00:00

  • Inverted optical intrinsic response accompanied by decreased cerebral blood flow are related to both neuronal inhibition and excitation.

    abstract::Negative hemodynamic response has been widely reported in blood oxygenation level-dependent (BOLD) functional magnetic resonance imaging studies, however its origin is still controversial. Optical intrinsic signal (OIS) imaging can be used to study brain activity by simultaneously recording hemodynamic signals at diff...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep21627

    authors: Ma Z,Cao P,Sun P,Zhao L,Li L,Tong S,Lu Y,Yan Y,Chen Y,Chai X

    更新日期:2016-02-10 00:00:00

  • Brain wave classification using long short-term memory network based OPTICAL predictor.

    abstract::Brain-computer interface (BCI) systems having the ability to classify brain waves with greater accuracy are highly desirable. To this end, a number of techniques have been proposed aiming to be able to classify brain waves with high accuracy. However, the ability to classify brain waves and its implementation in real-...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-45605-1

    authors: Kumar S,Sharma A,Tsunoda T

    更新日期:2019-06-24 00:00:00

  • Oral administration of resveratrol or lactic acid bacterium improves lens elasticity.

    abstract::A decrease in the elasticity of the ocular lens during aging is associated with loss of the accommodative ability of the eye, leading to presbyopia. Although near vision impairment is a social issue affecting the length of healthy life expectancy and productivity of elderly people, an effective treatment to improve ne...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-021-81748-w

    authors: Nagashima H,Sasaki N,Amano S,Nakamura S,Hayano M,Tsubota K

    更新日期:2021-01-26 00:00:00

  • Ultrasound Powered Implants: Design, Performance Considerations and Simulation Results.

    abstract::Ultrasounds (US) has been used in the past decades as a non-invasive imaging modality. Although employed extensively in clinical applications for soft tissue imaging, the acoustic beams can also be used for sensing and actuation for biological implants. In this paper we present a unified three dimensional (3D) computa...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-63097-2

    authors: Rosa BMG,Yang GZ

    更新日期:2020-04-16 00:00:00

  • Aedes aegypti Odorant Binding Protein 22 selectively binds fatty acids through a conformational change in its C-terminal tail.

    abstract::Aedes aegypti is the primary vector for transmission of Dengue, Zika and chikungunya viruses. Previously it was shown that Dengue virus infection of the mosquito led to an in increased expression of the odorant binding protein 22 (AeOBP22) within the mosquito salivary gland and that siRNA mediated knockdown of AeOBP22...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-60242-9

    authors: Wang J,Murphy EJ,Nix JC,Jones DNM

    更新日期:2020-02-24 00:00:00

  • Repression of the lysogenic PR promoter in bacteriophage TP901-1 through binding of a CI-MOR complex to a composite OM-OR operator.

    abstract::A functional genetic switch from the lactococcal bacteriophage TP901-1, deciding which of two divergently transcribing promoters becomes most active and allows this bi-stable decision to be inherited in future generations requires a DNA region of less than 1 kb. The fragment encodes two repressors, CI and MOR, transcr...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-65493-0

    authors: Pedersen M,Neergaard JT,Cassias J,Rasmussen KK,Lo Leggio L,Sneppen K,Hammer K,Kilstrup M

    更新日期:2020-05-26 00:00:00

  • Unsaturated fatty acids as high-affinity ligands of the C-terminal Per-ARNT-Sim domain from the Hypoxia-inducible factor 3α.

    abstract::Hypoxia-inducible transcription factors (HIF) form heterodimeric complexes that mediate cell responses to hypoxia. The oxygen-dependent stability and activity of the HIF-α subunits is traditionally associated to post-translational modifications such as hydroxylation, acetylation, ubiquitination, and phosphorylation. H...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep12698

    authors: Fala AM,Oliveira JF,Adamoski D,Aricetti JA,Dias MM,Dias MVB,Sforça ML,Lopes-de-Oliveira PS,Rocco SA,Caldana C,Dias SMG,Ambrosio ALB

    更新日期:2015-08-03 00:00:00

  • Distinguishing mirtrons from canonical miRNAs with data exploration and machine learning methods.

    abstract::Mirtrons are non-canonical microRNAs encoded in introns the biogenesis of which starts with splicing. They are not processed by Drosha and enter the canonical pathway at the Exportin-5 level. Mirtrons are much less evolutionary conserved than canonical miRNAs. Due to the differences, canonical miRNA predictors are not...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-25578-3

    authors: Rorbach G,Unold O,Konopka BM

    更新日期:2018-05-15 00:00:00

  • Global Trends and Regional Variations in Studies of HIV/AIDS.

    abstract::We conduct textual analysis of a sample of more than 200,000 papers written on HIV/AIDS during the past three decades. Using the Latent Dirichlet Allocation method, we disentangle studies that address behavioral and social aspects from other studies and measure the trends of different topics as related to HIV/AIDS. We...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-04527-6

    authors: Baghaei Lakeh A,Ghaffarzadegan N

    更新日期:2017-06-23 00:00:00

  • Mechanisms shaping size structure and functional diversity of phytoplankton communities in the ocean.

    abstract::The factors regulating phytoplankton community composition play a crucial role in structuring aquatic food webs. However, consensus is still lacking about the mechanisms underlying the observed biogeographical differences in cell size composition of phytoplankton communities. Here we use a trait-based model to disenta...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep08918

    authors: Acevedo-Trejos E,Brandt G,Bruggeman J,Merico A

    更新日期:2015-03-09 00:00:00

  • Improving the performance of bright quantum dot single photon sources using temporal filtering via amplitude modulation.

    abstract::Single epitaxially-grown semiconductor quantum dots have great potential as single photon sources for photonic quantum technologies, though in practice devices often exhibit nonideal behavior. Here, we demonstrate that amplitude modulation can improve the performance of quantum-dot-based sources. Starting with a brigh...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep01397

    authors: Ates S,Agha I,Gulinatti A,Rech I,Badolato A,Srinivasan K

    更新日期:2013-01-01 00:00:00

  • Visualization of Surface Acoustic Waves in Thin Liquid Films.

    abstract::We demonstrate that the propagation path of a surface acoustic wave (SAW), excited with an interdigitated transducer (IDT), can be visualized using a thin liquid film dispensed onto a lithium niobate (LiNbO3) substrate. The practical advantages of this visualization method are its rapid and simple implementation, with...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep21980

    authors: Rambach RW,Taiber J,Scheck CM,Meyer C,Reboud J,Cooper JM,Franke T

    更新日期:2016-02-26 00:00:00

  • Characterization of mouse ocular response to a 35-day spaceflight mission: Evidence of blood-retinal barrier disruption and ocular adaptations.

    abstract::The health risks associated with spaceflight-induced ocular structural and functional damage has become a recent concern for NASA. The goal of the present study was to characterize the effects of spaceflight and reentry to 1 g on the structure and integrity of the retina and blood-retinal barrier (BRB) in the eye. To ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-44696-0

    authors: Mao XW,Nishiyama NC,Byrum SD,Stanbouly S,Jones T,Drew A,Sridharan V,Boerma M,Tackett AJ,Zawieja D,Willey JS,Delp M,Pecaut MJ

    更新日期:2019-06-03 00:00:00

  • Detection and Categorization of Diarrheagenic Escherichia coli with Auto-microfluidic Thin-film Chip Method.

    abstract::Diarrheagenic Escherichia coli (DEC) causes human diarrhea symptom in both healthy and immunocompromised individuals. An auto-microfluidic thin-film chip (AMTC) instrument integrating one-step multiplex PCR (mPCR) with reverse dot blot hybridization (RDBH) was developed for high-throughput detection of DEC. The novel ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-30765-3

    authors: Yun Z,Zeng L,Huang W,Wu Q,Fan Y,Zheng S,Peng L,Han J,Huang Y,Zhou H,Chen H

    更新日期:2018-08-27 00:00:00

  • A novel, rapid method to compare the therapeutic windows of oral anticoagulants using the Hill coefficient.

    abstract::A central challenge in designing and administering effective anticoagulants is achieving the proper therapeutic window and dosage for each patient. The Hill coefficient, nH, which measures the steepness of a dose-response relationship, may be a useful gauge of this therapeutic window. We sought to measure the Hill coe...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep29387

    authors: Chang JB,Quinnies KM,Realubit R,Karan C,Rand JH,Tatonetti NP

    更新日期:2016-07-21 00:00:00

  • Alleviation of depression-like behavior in a cystic fibrosis mouse model by Hdac6 depletion.

    abstract::Cystic fibrosis (CF) patients experience heightened levels of anxiety and depression. Stress from dealing with chronic disease and rigorous treatment regimens certainly are primary contributors to these outcomes. We previously have demonstrated that microtubule alterations in CF are linked to a number of CF phenotypes...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-73298-4

    authors: Corey DA,Rymut SM,Kelley TJ

    更新日期:2020-10-01 00:00:00

  • BPA-Induced Deregulation Of Epigenetic Patterns: Effects On Female Zebrafish Reproduction.

    abstract::Bisphenol A (BPA) is one of the commonest Endocrine Disruptor Compounds worldwide. It interferes with vertebrate reproduction, possibly by inducing deregulation of epigenetic mechanisms. To determine its effects on female reproductive physiology and investigate whether changes in the expression levels of genes related...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep21982

    authors: Santangeli S,Maradonna F,Gioacchini G,Cobellis G,Piccinetti CC,Dalla Valle L,Carnevali O

    更新日期:2016-02-25 00:00:00

  • Early functional network alterations in asymptomatic elders at risk for Alzheimer's disease.

    abstract::Amyloid-β (Aβ) deposition is known to starts decades before the onset of clinical symptoms of Alzheimer's disease (AD), however, the detailed pathophysiological processes underlying this preclinical period are not well understood. This study aimed to investigate functional network alterations in cognitively intact eld...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-06876-8

    authors: Nakamura A,Cuesta P,Kato T,Arahata Y,Iwata K,Yamagishi M,Kuratsubo I,Kato K,Bundo M,Diers K,Fernández A,Maestú F,Ito K

    更新日期:2017-07-26 00:00:00