Mechanisms shaping size structure and functional diversity of phytoplankton communities in the ocean.

Abstract:

:The factors regulating phytoplankton community composition play a crucial role in structuring aquatic food webs. However, consensus is still lacking about the mechanisms underlying the observed biogeographical differences in cell size composition of phytoplankton communities. Here we use a trait-based model to disentangle these mechanisms in two contrasting regions of the Atlantic Ocean. In our model, the phytoplankton community can self-assemble based on a trade-off emerging from relationships between cell size and (1) nutrient uptake, (2) zooplankton grazing, and (3) phytoplankton sinking. Grazing 'pushes' the community towards larger cell sizes, whereas nutrient uptake and sinking 'pull' the community towards smaller cell sizes. We find that the stable environmental conditions of the tropics strongly balance these forces leading to persistently small cell sizes and reduced size diversity. In contrast, the seasonality of the temperate region causes the community to regularly reorganize via shifts in species composition and to exhibit, on average, bigger cell sizes and higher size diversity than in the tropics. Our results raise the importance of environmental variability as a key structuring mechanism of plankton communities in the ocean and call for a reassessment of the current understanding of phytoplankton diversity patterns across latitudinal gradients.

journal_name

Sci Rep

journal_title

Scientific reports

authors

Acevedo-Trejos E,Brandt G,Bruggeman J,Merico A

doi

10.1038/srep08918

subject

Has Abstract

pub_date

2015-03-09 00:00:00

pages

8918

issn

2045-2322

pii

srep08918

journal_volume

5

pub_type

杂志文章
  • Deconvoluting the Photonic and Electronic Response of 2D Materials: The Case of MoS2.

    abstract::Evaluating and tuning the properties of two-dimensional (2D) materials is a major focus of advancing 2D science and technology. While many claim that the photonic properties of a 2D layer provide evidence that the material is "high quality", this may not be true for electronic performance. In this work, we deconvolute...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-16970-6

    authors: Zhang K,Borys NJ,Bersch BM,Bhimanapati GR,Xu K,Wang B,Wang K,Labella M,Williams TA,Haque MA,Barnard ES,Fullerton-Shirey S,Schuck PJ,Robinson JA

    更新日期:2017-12-05 00:00:00

  • Control of the interaction strength of photonic molecules by nanometer precise 3D fabrication.

    abstract::Applications for high resolution 3D profiles, so-called grayscale lithography, exist in diverse fields such as optics, nanofluidics and tribology. All of them require the fabrication of patterns with reliable absolute patterning depth independent of the substrate location and target materials. Here we present a comple...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-16496-x

    authors: Rawlings CD,Zientek M,Spieser M,Urbonas D,Stöferle T,Mahrt RF,Lisunova Y,Brugger J,Duerig U,Knoll AW

    更新日期:2017-11-28 00:00:00

  • Fluorometric Measurement of Individual Stomata Activity and Transpiration via a "Brush-on", Water-Responsive Polymer.

    abstract::Much of atmospheric water originates from transpiration, the process by which plants release H2O from pores, known as stomata, that simultaneously intake CO2 for photosynthesis. Controlling stomatal aperture can regulate the extent of water transport in response to dynamic environmental factors including osmotic stres...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep32394

    authors: Seo M,Park DH,Lee CW,Jaworski J,Kim JM

    更新日期:2016-08-31 00:00:00

  • Retinal vein occlusion and the risk of acute myocardial infarction development: a 12-year nationwide cohort study.

    abstract::The goal of this study was to evaluate the risk of developing acute myocardial infarction (AMI) following retinal vein occlusion (RVO). A retrospective cohort study was performed from the National Health Insurance Service and comprised 1,025,340 random subjects who were followed from 2002 to 2013. Patients with RVO in...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep22351

    authors: Rim TH,Han JS,Oh J,Kim DW,Kang SM,Chung EJ

    更新日期:2016-02-29 00:00:00

  • Locus-specific Retention Predictor (LsRP): A Peptide Retention Time Predictor Developed for Precision Proteomics.

    abstract::The precision prediction of peptide retention time (RT) plays an increasingly important role in liquid chromatography-tandem mass spectrometry (LC-MS/MS) based proteomics. Owing to the high reproducibility of liquid chromatography, RT prediction provides promising information for both identification and quantification...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep43959

    authors: Lu W,Liu X,Liu S,Cao W,Zhang Y,Yang P

    更新日期:2017-03-17 00:00:00

  • Proteomic analysis of knee cartilage reveals potential signaling pathways in pathological mechanism of Kashin-Beck disease compared with osteoarthritis.

    abstract::The pathological mechanism of Kashin-Beck disease (KBD), an endemic osteoarthritic disease, remains to be poorly understood. This study was designed to identify signaling pathways and crucial proteins involved in the pathological mechanism of KBD compared with osteoarthritis (OA). The knee cartilage samples were colle...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-63932-6

    authors: Lei J,Amhare AF,Wang L,Lv Y,Deng H,Gao H,Guo X,Han J,Lammi MJ

    更新日期:2020-04-22 00:00:00

  • A Comparative Analysis of Community Detection Algorithms on Artificial Networks.

    abstract::Many community detection algorithms have been developed to uncover the mesoscopic properties of complex networks. However how good an algorithm is, in terms of accuracy and computing time, remains still open. Testing algorithms on real-world network has certain restrictions which made their insights potentially biased...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep30750

    authors: Yang Z,Algesheimer R,Tessone CJ

    更新日期:2016-08-01 00:00:00

  • Spatiotemporal disturbance characteristics determine functional stability and collapse risk of simulated microbial ecosystems.

    abstract::Terrestrial microbial ecosystems are exposed to many types of disturbances varying in their spatial and temporal characteristics. The ability to cope with these disturbances is crucial for maintaining microbial ecosystem functions, especially if disturbances recur regularly. Thus, understanding microbial ecosystem dyn...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-27785-4

    authors: König S,Worrich A,Banitz T,Centler F,Harms H,Kästner M,Miltner A,Wick LY,Thullner M,Frank K

    更新日期:2018-06-22 00:00:00

  • Adaptive immunity against gut microbiota enhances apoE-mediated immune regulation and reduces atherosclerosis and western-diet-related inflammation.

    abstract::Common features of immune-metabolic and inflammatory diseases such as metabolic syndrome, diabetes, obesity and cardiovascular diseases are an altered gut microbiota composition and a systemic pro-inflammatory state. We demonstrate that active immunization against the outer membrane protein of bacteria present in the ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep29353

    authors: Saita D,Ferrarese R,Foglieni C,Esposito A,Canu T,Perani L,Ceresola ER,Visconti L,Burioni R,Clementi M,Canducci F

    更新日期:2016-07-07 00:00:00

  • Elastin is Localised to the Interfascicular Matrix of Energy Storing Tendons and Becomes Increasingly Disorganised With Ageing.

    abstract::Tendon is composed of fascicles bound together by the interfascicular matrix (IFM). Energy storing tendons are more elastic and extensible than positional tendons; behaviour provided by specialisation of the IFM to enable repeated interfascicular sliding and recoil. With ageing, the IFM becomes stiffer and less fatigu...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-09995-4

    authors: Godinho MSC,Thorpe CT,Greenwald SE,Screen HRC

    更新日期:2017-08-30 00:00:00

  • Female Breast Cancer Mortality Clusters in Shandong Province, China: A Spatial Analysis.

    abstract::This study aimed to detect the spatial distribution and high-risk clusters of female breast cancer mortality for the years 2011 to 2013 in Shandong Province, China. The urban-rural difference in the spatial distribution and clusters of disease mortality were also examined. Breast cancer mortality data were obtained fr...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-00179-8

    authors: Chu J,Zhou C,Guo X,Sun J,Xue F,Zhang J,Lu Z,Fu Z,Xu A

    更新日期:2017-03-07 00:00:00

  • Graphdiyne as a promising material for detecting amino acids.

    abstract::The adsorption of glycine, glutamic acid, histidine and phenylalanine on single-layer graphdiyne/graphene is investigated by ab initio calculations. The results show that for each amino acid molecule, the adsorption energy on graphdiyne is larger than the adsorption energy on graphene and dispersion interactions predo...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep16720

    authors: Chen X,Gao P,Guo L,Zhang S

    更新日期:2015-11-16 00:00:00

  • Temporal-specific complexity of spiking patterns in spontaneous activity induced by a dual complex network structure.

    abstract::Temporal fluctuation of neural activity in the brain has an important function in optimal information processing. Spontaneous activity is a source of such fluctuation. The distribution of excitatory postsynaptic potentials (EPSPs) between cortical pyramidal neurons can follow a log-normal distribution. Recent studies ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-49286-8

    authors: Nobukawa S,Nishimura H,Yamanishi T

    更新日期:2019-09-04 00:00:00

  • Nonerythropoietic Erythropoietin-Derived Peptide Suppresses Adipogenesis, Inflammation, Obesity and Insulin Resistance.

    abstract::Erythropoietin (EPO) has been identified as being crucial for obesity modulation; however, its erythropoietic activity may limit its clinical application. EPO-derived Helix B-surface peptide (pHBSP) is nonerythrogenic but has been reported to retain other functions of EPO. The current study aimed to evaluate the effec...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep15134

    authors: Liu Y,Luo B,Shi R,Wang J,Liu Z,Liu W,Wang S,Zhang Z

    更新日期:2015-10-13 00:00:00

  • Predicting protein-peptide interaction sites using distant protein complexes as structural templates.

    abstract::Protein-peptide interactions play an important role in major cellular processes, and are associated with several human diseases. To understand and potentially regulate these cellular function and diseases it is important to know the molecular details of the interactions. However, because of peptide flexibility and the...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-38498-7

    authors: Johansson-Åkhe I,Mirabello C,Wallner B

    更新日期:2019-03-12 00:00:00

  • The complete chloroplast genome of Stryphnodendron adstringens (Leguminosae - Caesalpinioideae): comparative analysis with related Mimosoid species.

    abstract::Stryphnodendron adstringens is a medicinal plant belonging to the Leguminosae family, and it is commonly found in the southeastern savannas, endemic to the Cerrado biome. The goal of this study was to assemble and annotate the chloroplast genome of S. adstringens and to compare it with previously known genomes of the ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-50620-3

    authors: Souza UJB,Nunes R,Targueta CP,Diniz-Filho JAF,Telles MPC

    更新日期:2019-10-02 00:00:00

  • From homogeneous to heterogeneous network alignment via colored graphlets.

    abstract::Network alignment (NA) compares networks with the goal of finding a node mapping that uncovers highly similar (conserved) network regions. Existing NA methods are homogeneous, i.e., they can deal only with networks containing nodes and edges of one type. Due to increasing amounts of heterogeneous network data with nod...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-30831-w

    authors: Gu S,Johnson J,Faisal FE,Milenković T

    更新日期:2018-08-21 00:00:00

  • The RNA-binding protein quaking maintains endothelial barrier function and affects VE-cadherin and β-catenin protein expression.

    abstract::Proper regulation of endothelial cell-cell contacts is essential for physiological functioning of the endothelium. Interendothelial junctions are actively involved in the control of vascular leakage, leukocyte diapedesis, and the initiation and progression of angiogenesis. We found that the RNA-binding protein quaking...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep21643

    authors: de Bruin RG,van der Veer EP,Prins J,Lee DH,Dane MJ,Zhang H,Roeten MK,Bijkerk R,de Boer HC,Rabelink TJ,van Zonneveld AJ,van Gils JM

    更新日期:2016-02-24 00:00:00

  • Characteristics, injuries, and clinical outcomes of geriatric trauma patients in Japan: an analysis of the nationwide trauma registry database.

    abstract::Geriatric trauma is a major socio-economic problem, especially among the aging Japanese society. Geriatric people are more vulnerable to trauma than younger people; thus, their outcomes are often severe. This study evaluates the characteristics of geriatric trauma divided by age in the Japanese population. We evaluate...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-76149-4

    authors: Miyoshi Y,Kondo Y,Hirano Y,Ishihara T,Sueyoshi K,Okamoto K,Tanaka H

    更新日期:2020-11-05 00:00:00

  • Honeybee pupal length assessed by CT-scan technique: effects of Varroa infestation, developmental stage and spatial position within the brood comb.

    abstract::Honeybee pupae morphology can be affected by a number of stressor, but in vivo investigation is difficult. A computed tomography (CT) technique was applied to visualize a comb's inner structure without damaging the brood. The CT scan was performed on a brood comb containing pupae developed from eggs laid by the queen ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-46474-4

    authors: Facchini E,Nalon L,Andreis ME,Di Giancamillo M,Rizzi R,Mortarino M

    更新日期:2019-07-23 00:00:00

  • Distribution of petroleum degrading genes and factor analysis of petroleum contaminated soil from the Dagang Oilfield, China.

    abstract::Genes that encode for enzymes that can degrade petroleum hydrocarbons (PHs) are critical for the ability of microorganisms to bioremediate soils contaminated with PHs. Distributions of two petroleum-degrading genes AlkB and Nah in soils collected from three zones of the Dagang Oilfield, Tianjin, China were investigate...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep11068

    authors: Liu Q,Tang J,Bai Z,Hecker M,Giesy JP

    更新日期:2015-06-18 00:00:00

  • The ion microscope as a tool for quantitative measurements in the extreme ultraviolet.

    abstract::We demonstrate a tool for quantitative measurements in the extreme ultraviolet (EUV) spectral region measuring spatially resolved atomic ionization products at the focus of an EUV beam. The ionizing radiation is a comb of the 11(th)-15(th) harmonics of a Ti:Sapphire femtosecond laser beam produced in a Xenon gas jet. ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep21556

    authors: Tsatrafyllis N,Bergues B,Schröder H,Veisz L,Skantzakis E,Gray D,Bodi B,Kuhn S,Tsakiris GD,Charalambidis D,Tzallas P

    更新日期:2016-02-12 00:00:00

  • Clinical Implementation of Integrated Genomic Profiling in Patients with Advanced Cancers.

    abstract::DNA focused panel sequencing has been rapidly adopted to assess therapeutic targets in advanced/refractory cancer. Integrated Genomic Profiling (IGP) utilising DNA/RNA with tumour/normal comparisons in a Clinical Laboratory Improvement Amendments (CLIA) compliant setting enables a single assay to provide: therapeutic ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-016-0021-4

    authors: Borad MJ,Egan JB,Condjella RM,Liang WS,Fonseca R,Ritacca NR,McCullough AE,Barrett MT,Hunt KS,Champion MD,Patel MD,Young SW,Silva AC,Ho TH,Halfdanarson TR,McWilliams RR,Lazaridis KN,Ramanathan RK,Baker A,Aldrich J,

    更新日期:2016-12-23 00:00:00

  • Isolation and characterization of a novel oligomeric proanthocyanidin with significant anti-cancer activities from grape stems (Vitis vinifera).

    abstract::Novel proanthocyanidin fractions from grape stem extracts were purified using Amberlite XAD-1180N, Sephadex-LH-20, Toyopearl HW40F and reverse phase high-performance liquid chromatography. Two key compounds were estimated as epigallocatechin-(epicatechin)7 gallate using electron-spray ionization time-of-flight mass sp...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-48603-5

    authors: Sei-Ichi K,Toda K,Matsumoto K,Ishihara C,Nonobe S,Matsunaga C,Gomi YK,Senga S,Kawaguchi K,Yamamoto A,Suwannachot J,Noda R,Kobayashi S,Hamauzu Y,Makabe H,Fujii H

    更新日期:2019-08-19 00:00:00

  • Marine alkaloid monanchoxymycalin C: a new specific activator of JNK1/2 kinase with anticancer properties.

    abstract::Monanchoxymycalin C (MomC) is a new marine pentacyclic guanidine alkaloid, recently isolated from marine sponge Monanchora pulchra by us. Here, anticancer activity and mechanism of action was investigated for the first time using a human prostate cancer (PCa) model. MomC was active in all PCa cell lines at low micromo...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-69751-z

    authors: Dyshlovoy SA,Kaune M,Kriegs M,Hauschild J,Busenbender T,Shubina LK,Makarieva TN,Hoffer K,Bokemeyer C,Graefen M,Stonik VA,von Amsberg G

    更新日期:2020-08-06 00:00:00

  • Manipulation of Optical Transmittance by Ordered-Oxygen-Vacancy in Epitaxial LaBaCo2O5.5+δ Thin Films.

    abstract::Giant optical transmittance changes of over 300% in wide wavelength range from 500 nm to 2500 nm were observed in LaBaCo2O5.5+δ thin films annealed in air and ethanol ambient, respectively. The reduction process induces high density of ordered oxygen vacancies and the formation of LaBaCo2O5.5 (δ = 0) structure evidenc...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep37496

    authors: Cheng S,Lu J,Han D,Liu M,Lu X,Ma C,Zhang S,Chen C

    更新日期:2016-11-23 00:00:00

  • A Dual-reporter system for real-time monitoring and high-throughput CRISPR/Cas9 library screening of the hepatitis C virus.

    abstract::The hepatitis C virus (HCV) is one of the leading causes of chronic hepatitis, liver cirrhosis and hepatocellular carcinomas and infects approximately 170 million people worldwide. Although several reporter systems have been developed, many shortcomings limit their use in the assessment of HCV infections. Here, we rep...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep08865

    authors: Ren Q,Li C,Yuan P,Cai C,Zhang L,Luo GG,Wei W

    更新日期:2015-03-09 00:00:00

  • GPS tracking for mapping seabird mortality induced by light pollution.

    abstract::Light pollution and its consequences on ecosystems are increasing worldwide. Knowledge on the threshold levels of light pollution at which significant ecological impacts emerge and the size of dark refuges to maintain natural nocturnal processes is crucial to mitigate its negative consequences. Seabird fledglings are ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep10670

    authors: Rodríguez A,Rodríguez B,Negro JJ

    更新日期:2015-06-02 00:00:00

  • A validated computational framework to predict outcomes in TAVI.

    abstract::Transcatheter aortic valve implantation (TAVI) still presents complications: paravalvular leakage (PVL) and onset of conduction abnormalities leading to permanent pacemaker implantation. Our aim was testing a validated patient-specific computational framework for prediction of TAVI outcomes and possible complications....

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-66899-6

    authors: Bosi GM,Capelli C,Cheang MH,Delahunty N,Mullen M,Taylor AM,Schievano S

    更新日期:2020-06-18 00:00:00

  • A Novel, Stable, Estradiol-Stimulating, Osteogenic Yam Protein with Potential for the Treatment of Menopausal Syndrome.

    abstract::A novel protein, designated as DOI, isolated from the Chinese yam (Dioscorea opposita Thunb.) could be the first protein drug for the treatment of menopausal syndrome and an alternative to hormone replacement therapy (HRT), which is known to have undesirable side effects. DOI is an acid- and thermo-stable protein with...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep10179

    authors: Wong KL,Lai YM,Li KW,Lee KF,Ng TB,Cheung HP,Zhang YB,Lao L,Wong RN,Shaw PC,Wong JH,Zhang ZJ,Lam JK,Ye WC,Sze SC

    更新日期:2015-07-10 00:00:00