Maternal ancestry analyses of red tilapia strains based on D-loop sequences of seven tilapia populations.

Abstract:

Background:Many tilapia species or varieties have been widely introduced and have become an economically important food fish in China. Information on the genetic backgrounds of these populations is deficient and requires more research, especially for red tilapia strains. Methods:In the present study, displacement loop (D-loop) sequences were used to evaluate the genetic relationship and diversity of seven tilapia populations that are widely cultured in China; this was done specifically to speculate on the maternal ancestry of red tilapia strains. Three red tilapia varieties of Oreochromis ssp., Taiwan (TW), Israel (IL), and Malaysia (MY) strains and other populations, including O. aureus (AR), O. niloticus (NL), O. mossambicus (MS), and the GIFT strain of O. niloticus, were collected and analyzed in this study. Results:A total of 146 polymorphic sites and 32 haplotypes of D-loop sequences were detected among 332 fish and four major haplotypes were shared among the populations. The TW and NL populations had a greater number of haplotypes (20 and 8, respectively). The haplotype diversity (Hd) and nucleotide diversity (π) of each population ranged from 0.234 to 0.826, and 0 to 0.060, respectively. The significant positive Tajima's D value of neutral test were detected in the NL, IL, and MY populations (P < 0.05), which indicated these populations might have not experienced historical expansion. According to the pairwise F-statistics, highly significant genetic differentiations were detected among populations (P < 0.01), with the exception of the IL and MY populations (P > 0.05). The nearest K2P genetic distance (D = 0.014) was detected between the MS and TW populations, whereas, the farthest (D = 0.101) was found between the GIFT and AR populations. The results from the molecular variance analysis (AMOVA) showed that there was an extremely significant genetic variation observed among the populations (P < 0.01), which contained 63.57% of the total variation. In view of the genetic relationship of red tilapia strains with other populations, TW and IL were detected with more similar genetic structures related to MS, and MY was more genetically similar to GIFT (or NL), which could provide more genetic evidence for the red tilapia strains maternal ancestry.

journal_name

PeerJ

journal_title

PeerJ

authors

Jiang B,Fu J,Dong Z,Fang M,Zhu W,Wang L

doi

10.7717/peerj.7007

subject

Has Abstract

pub_date

2019-05-29 00:00:00

pages

e7007

issn

2167-8359

pii

7007

journal_volume

7

pub_type

杂志文章

相关文献

PeerJ文献大全
  • Neurodynamic mobilization and foam rolling improved delayed-onset muscle soreness in a healthy adult population: a randomized controlled clinical trial.

    abstract:OBJECTIVES:Compare the immediate effects of a Neurodynamic Mobilization (NM) treatment or foam roller (FR) treatment after DOMS. DESIGN:Double blind randomised clinical trial. SETTING:The participants performed 100 drop jumps (5 sets of 20 repetitions, separated by 2 min rests) from a 0.5-m high box in a University b...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.3908

    authors: Romero-Moraleda B,La Touche R,Lerma-Lara S,Ferrer-Peña R,Paredes V,Peinado AB,Muñoz-García D

    更新日期:2017-10-13 00:00:00

  • Identification and validation of key modules and hub genes associated with the pathological stage of oral squamous cell carcinoma by weighted gene co-expression network analysis.

    abstract:Background:Oral squamous cell carcinoma (OSCC) is a major lethal malignant cancer of the head and neck region, yet its molecular mechanisms of tumourigenesis are still unclear. Patients and methods:We performed weighted gene co-expression network analysis (WGCNA) on RNA-sequencing data with clinical information obtain...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.8505

    authors: Hu X,Sun G,Shi Z,Ni H,Jiang S

    更新日期:2020-02-04 00:00:00

  • Extraordinary centromeres: differences in the meiotic chromosomes of two rock lizards species Darevskia portschinskii and Darevskia raddei.

    abstract::According to the synthesis of 30 years of multidisciplinary studies, parthenogenetic species of rock lizards of genus Darevskia were formed as a result of different combination patterns of interspecific hybridization of the four bisexual parental species: Darevskia raddei, D. mixta, D. valentini, and D. portschinskii....

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.6360

    authors: Spangenberg V,Arakelyan M,Galoyan E,Pankin M,Petrosyan R,Stepanyan I,Grishaeva T,Danielyan F,Kolomiets O

    更新日期:2019-01-30 00:00:00

  • Primary molt in Gruiforms and simpler molt summary tables.

    abstract::Molt summary tables reveal the sequence and mode of flight-feather replacement and how these feathers are divided into independent replacement series. Tables for summarizing molt are relatively new, and the rules for generating them were first formally illustrated using data from a temperate passerine. However, this f...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.5499

    authors: Rohwer S,Rohwer VG

    更新日期:2018-09-07 00:00:00

  • A new species of freshwater crab genus Fredius Pretzmann, 1967 (Crustacea: Brachyura: Pseudothelphusidae) from a naturally isolated orographic forest enclave within the semiarid Caatinga in Ceará, northeastern Brazil.

    abstract::A new species of freshwater crab, Fredius ibiapaba, is described and illustrated from a mid-altitude forested patch in Ipú (Ibiapaba plateau, Ceará, northeastern Brazil), between 635 to 782 m. The new species can be separated from its congeners by the morphology of its first gonopod: proximal half remarkably swollen, ...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.9370

    authors: Santos LC,Tavares M,Silva JRF,Cervini M,Pinheiro AP,Santana W

    更新日期:2020-06-29 00:00:00

  • The dynamics of grooming interactions: maintenance of partner choice and the consequences of demographic variation for female mandrills.

    abstract::A large body of evidence suggests that female Old World monkeys maintain selective long-term grooming interactions with fitness benefits. The last two decades have produced evidence that the regulation of social interactions among primates can be, in part, explained by the Biological Markets theory, with grooming beha...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.6332

    authors: Pereira AS,Rebelo ID,Casanova C,Lee PC,Louca V

    更新日期:2019-01-25 00:00:00

  • Dynamics of ammonia oxidizers and denitrifiers in response to compost addition in black soil, Northeast China.

    abstract::Organic fertilizer application could have an impact on the nitrogen cycle mediated by microorganisms in arable soils. However, the dynamics of soil ammonia oxidizers and denitrifiers in response to compost addition are less understood. In this study, we examined the effect of four compost application rates (0, 11.25, ...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.8844

    authors: Yang Z,Guan Y,Bello A,Wu Y,Ding J,Wang L,Ren Y,Chen G,Yang W

    更新日期:2020-04-21 00:00:00

  • Comparisons of WUE in twelve genotypes of winter wheat and the relationship between δ 13C and WUE.

    abstract::Twelve winter wheat (Triticum aestivum) genotypes were examined for differences in grain yield, water use efficiency (WUE), and stable carbon isotope composition (δ13C) in flag leaves. The plants were subjected to rain-fed treatment and supplemental irrigation at the jointing and anthesis stages, during the 2015-2016 ...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.6767

    authors: Huang G,Zhang X,Wang Y,Feng F,Mei X,Zhong X

    更新日期:2019-04-17 00:00:00

  • Microgeographic variation in body condition of three Mexican garter snakes in central Mexico.

    abstract:Background:Geographic variation in body size and condition can reveal differential local adaptation to resource availability or climatic factors. Body size and condition are related to fitness in garter snakes (Thamnophis), thus good body condition may increase survival, fecundity in females, and mating success in male...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.6601

    authors: Valencia-Flores E,Venegas-Barrera CS,Fajardo V,Manjarrez J

    更新日期:2019-03-13 00:00:00

  • Threshold-like associations as a function of disturbance.

    abstract::According to the intelligence-creativity threshold hypothesis, there should be a positive association between intelligence and creative potential up to a certain point, the threshold, after which a further increase in intelligence should have no association with creativity. In the present simulation study, the measure...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.7891

    authors: Sorjonen K,Ingre M,Melin B

    更新日期:2019-10-21 00:00:00

  • Methylene blue inhibits nucleation and elongation of SOD1 amyloid fibrils.

    abstract::Protein aggregation into highly-structured amyloid fibrils is linked to several neurodegenerative diseases. Such fibril formation by superoxide dismutase I (SOD1) is considered to be related to amyotrophic lateral sclerosis, a late-onset and fatal disorder. Despite much effort and the discovery of numerous anti-amyloi...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.9719

    authors: Musteikyte G,Ziaunys M,Smirnovas V

    更新日期:2020-08-14 00:00:00

  • Towards a barnacle tree of life: integrating diverse phylogenetic efforts into a comprehensive hypothesis of thecostracan evolution.

    abstract::Barnacles and their allies (Thecostraca) are a biologically diverse, monophyletic crustacean group, which includes both intensely studied taxa, such as the acorn and stalked barnacles, as well as cryptic taxa, for example, Facetotecta. Recent efforts have clarified phylogenetic relationships in many different parts of...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.7387

    authors: Ewers-Saucedo C,Owen CL,Pérez-Losada M,Høeg JT,Glenner H,Chan BKK,Crandall KA

    更新日期:2019-08-16 00:00:00

  • Increased root hair density by loss of WRKY6 in Arabidopsis thaliana.

    abstract::Root hairs are unicellular elongations of certain rhizodermal cells that improve the uptake of sparingly soluble and immobile soil nutrients. Among different Arabidopsis thaliana genotypes, root hair density, length and the local acclimation to low inorganic phosphate (Pi) differs considerably, when analyzed on split ...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.2891

    authors: Stetter MG,Benz M,Ludewig U

    更新日期:2017-01-24 00:00:00

  • Intraspecific divergences and phylogeography of Panzerina lanata (Lamiaceae) in northwest China.

    abstract::Climatic fluctuations during the Quaternary significantly affect many species in their intraspecific divergence and population structure across northwest China. In order to investigate the impact of climate change on herbaceous plants, we studied Panzerina lanata (Lamiaceae), a widely distributed species. Sequences of...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.6264

    authors: Zhao Y,Zhang H,Pan B,Zhang M

    更新日期:2019-01-24 00:00:00

  • Dominance hierarchies, diversity and species richness of vascular plants in an alpine meadow: contrasting short and medium term responses to simulated global change.

    abstract::We studied the impact of simulated global change on a high alpine meadow plant community. Specifically, we examined whether short-term (5 years) responses are good predictors for medium-term (7 years) changes in the system by applying a factorial warming and nutrient manipulation to 20 plots in Latnjajaure, subarctic ...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.406

    authors: Alatalo JM,Little CJ,Jägerbrand AK,Molau U

    更新日期:2014-05-22 00:00:00

  • An updated assessment of Symbiodinium spp. that associate with common scleractinian corals from Moorea (French Polynesia) reveals high diversity among background symbionts and a novel finding of clade B.

    abstract::The adaptative bleaching hypothesis (ABH) states that, depending on the symbiotic flexibility of coral hosts (i.e., the ability of corals to "switch" or "shuffle" their algal symbionts), coral bleaching can lead to a change in the composition of their associated Symbiodinium community and, thus, contribute to the cora...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.2856

    authors: Rouzé H,Lecellier GJ,Saulnier D,Planes S,Gueguen Y,Wirshing HH,Berteaux-Lecellier V

    更新日期:2017-01-05 00:00:00

  • Gene flow between subpopulations of gray snapper (Lutjanus griseus) from the Caribbean and Gulf of Mexico.

    abstract:Background:The gray snapper (Lutjanus griseus) has a tropical and subtropical distribution. In much of its range this species represents one of the most important fishery resources because of its high quality meat and market value. Due to this, this species is vulnerable to overfishing, and population declines have bee...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.8485

    authors: Rosado-Nic OJ,Hogan JD,Lara-Arenas JH,Rosas-Luis R,Carrillo L,Villegas-Sánchez CA

    更新日期:2020-02-10 00:00:00

  • A simple electroelution method for rapid protein purification: isolation and antibody production of alpha toxin from Clostridium septicum.

    abstract::Clostridium septicum produces a number of diseases in human and farm animals which, in most of the cases, are fatal without clinical intervention. Alpha toxin is an important agent and the unique lethal virulent factor produced by Clostridium septicum. This toxin is haemolytic, highly lethal and necrotizing activities...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.3407

    authors: Vázquez-Iglesias L,Estefanell-Ucha B,Barcia-Castro L,Páez de la Cadena M,Álvarez-Chaver P,Ayude-Vázquez D,Rodríguez-Berrocal FJ

    更新日期:2017-06-22 00:00:00

  • Potential spawn induction and suppression agents in Caribbean Acropora cervicornis corals of the Florida Keys.

    abstract::The enhanced ability to direct sexual reproduction may lead to improved restoration outcomes for Acropora cervicornis. Gravid fragments of A. cervicornis were maintained in a laboratory for two sequential trials in the seven days prior to natural spawning in the Florida Keys. Ten replicates of five chemicals known to ...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.1982

    authors: Flint M,Than JT

    更新日期:2016-04-26 00:00:00

  • A new tiny toad species of Amazophrynella (Anura: Bufonidae) from east of the Guiana Shield in Amazonia, Brazil.

    abstract::The combination of different approaches has successfully delimited new species within many Neotropical species complexes traditionally classified as a single nominal organism. Recent studies have shown that the Amazonian endemic genus Amazophrynella, currently composed of 12 small-sized species, could harbor several a...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.9887

    authors: Mângia S,Koroiva R,Santana DJ

    更新日期:2020-09-18 00:00:00

  • Job satisfaction and intention to quit: an empirical analysis of nurses in Turkey.

    abstract::The aim of this study was to identify the facets influencing job satisfaction and intention to quit of nurses employed in Turkey. Using a non-probability sampling technique, 417 nurses from six large private hospitals were surveyed from March 2014 to June 2014. The nurses' demographic data, their job-related satisfact...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.1896

    authors: Masum AK,Azad MA,Hoque KE,Beh LS,Wanke P,Arslan Ö

    更新日期:2016-04-26 00:00:00

  • The impact of PI3K inhibitors on breast cancer cell and its tumor microenvironment.

    abstract::The phosphoinositide 3-kinase (PI3K) pathway shows frequent aberrant alterations and pathological activation in breast cancer cells. While PI3K inhibitors have not achieved expectant therapeutic efficacy in clinical trials, and several studies provide promising combination strategies to substantially maximize therapeu...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.5092

    authors: Qin H,Liu L,Sun S,Zhang D,Sheng J,Li B,Yang W

    更新日期:2018-06-19 00:00:00

  • Antimicrobial activity of Tachyplesin 1 against Burkholderia pseudomallei: an in vitro and in silico approach.

    abstract::Burkholderia pseudomallei, the causative agent of melioidosis, is intrinsically resistant to many conventional antibiotics. Therefore, alternative antimicrobial agents such as antimicrobial peptides (AMPs) are extensively studied to combat this issue. Our study aims to identify and understand the mode of action of the...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.2468

    authors: Lee LF,Mariappan V,Vellasamy KM,Lee VS,Vadivelu J

    更新日期:2016-10-25 00:00:00

  • Exploring perceptions of meaningfulness in visual representations of bivariate relationships.

    abstract::Researchers often need to consider the practical significance of a relationship. For example, interpreting the magnitude of an effect size or establishing bounds in equivalence testing requires knowledge of the meaningfulness of a relationship. However, there has been little research exploring the degree of relationsh...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.6853

    authors: Beribisky N,Davidson H,Cribbie RA

    更新日期:2019-05-14 00:00:00

  • The impact of one-decade ecological disturbance on genetic changes: a study on the brine shrimp Artemia urmiana from Urmia Lake, Iran.

    abstract::Urmia Lake, the largest natural habitat of the brine shrimp Artemia urmiana, has progressively desiccated over the last two decades, resulting in a loss of 80% of its surface area and producing thousands of hectares of arid salty land. This ecological crisis has seriously affected the lake's native biodiversity. Artem...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.7190

    authors: Asem A,Eimanifar A,van Stappen G,Sun SC

    更新日期:2019-07-02 00:00:00

  • Mismatches between the genetic and phenotypic sex in the wild Kou population of Nile tilapia Oreochromis niloticus.

    abstract::Sex determination and sex chromosomes can be very diverse between teleost species. The group of tilapias shows a polymorphism in sex determination not only between closely related species but also between domestic strains within a species. In the Nile tilapia, the major effect genes and therefore the Y chromosome have...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.7709

    authors: Sissao R,D'Cotta H,Baroiller JF,Toguyeni A

    更新日期:2019-09-18 00:00:00

  • Identification of prognostic splicing factors and exploration of their potential regulatory mechanisms in pancreatic adenocarcinoma.

    abstract::Pancreatic adenocarcinoma (PAAD), the most common subtype of pancreatic cancer, is a highly lethal disease. In this study, we integrated the expression profiles of splicing factors (SFs) of PAAD from RNA-sequencing data to provide a comprehensive view of the clinical significance of SFs. A prognostic index (PI) based ...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.8380

    authors: Rong MH,Zhu ZH,Guan Y,Li MW,Zheng JS,Huang YQ,Wei DM,Li YM,Wu XJ,Bu HP,Peng HL,Wei XL,Li GS,Li MX,Chen MH,Huang SN

    更新日期:2020-02-11 00:00:00

  • Geriatric syndromes are potential determinants of the medication adherence status in prevalent dialysis patients.

    abstract::Background. Geriatric syndromes (GS) exhibit high prevalence in patients with end-stage renal disease (ESRD) under chronic dialysis irrespective of age. We sought to determine whether GS influences medication adherence in ESRD patients. Methods. A prospective cohort of chronic dialysis patients was assembled. The pres...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.2122

    authors: Chao CT,Huang JW,COGENT (COhort of GEriatric Nephrology in NTUH) study group.

    更新日期:2016-06-14 00:00:00

  • Combining UAV-based hyperspectral imagery and machine learning algorithms for soil moisture content monitoring.

    abstract::Soil moisture content (SMC) is an important factor that affects agricultural development in arid regions. Compared with the space-borne remote sensing system, the unmanned aerial vehicle (UAV) has been widely used because of its stronger controllability and higher resolution. It also provides a more convenient method ...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.6926

    authors: Ge X,Wang J,Ding J,Cao X,Zhang Z,Liu J,Li X

    更新日期:2019-05-03 00:00:00

  • Fibrochondrogenic potential of synoviocytes from osteoarthritic and normal joints cultured as tensioned bioscaffolds for meniscal tissue engineering in dogs.

    abstract::Meniscal tears are a common cause of stifle lameness in dogs. Use of autologous synoviocytes from the affected stifle is an attractive cell source for tissue engineering replacement fibrocartilage. However, the diseased state of these cells may impede in vitro fibrocartilage formation. Synoviocytes from 12 osteoarthri...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.581

    authors: Warnock JJ,Bobe G,Duesterdieck-Zellmer KF

    更新日期:2014-09-30 00:00:00