Intraspecific divergences and phylogeography of Panzerina lanata (Lamiaceae) in northwest China.

Abstract:

:Climatic fluctuations during the Quaternary significantly affect many species in their intraspecific divergence and population structure across northwest China. In order to investigate the impact of climate change on herbaceous plants, we studied Panzerina lanata (Lamiaceae), a widely distributed species. Sequences of two chloroplast DNA (cpDNA) intergenic spacers (trnH-psbA and rpoB-trnC) and a nuclear ribosomal region (nrDNA, ITS) were generated from 27 populations of Panzerina lanata and resulted in the identification of seven chloroplast haplotypes and thirty-two nuclear haplotypes. We applied AMOVA, neutrality test and mismatch distribution analysis to estimate genetic differentiation and demographic characteristics. The divergence times of the seven cpDNA haplotypes were estimated using BEAST. Our results revealed high levels of genetic diversity (cpDNA: Hcp = 0.6691, HT = 0.673; nrDNA: Hnr = 0.5668, HT = 0.577). High level of genetic differentiation (GST = 0.950) among populations was observed in the cpDNA sequences, while the genetic differentiation values (GST = 0.348) were low in nuclear sequences. AMOVA results revealed major genetic variation among the three groups: northern, central, and eastern group. However, the genetic differentiation in ITS data was not found. The species distribution modeling and demographic analysis indicated that P. lanata had not experienced recent range expansion. The occurrence of divergence between seven cpDNA haplotypes, probably during Pleistocene, coincides with aridification and expansion of the desert across northwest China that resulted in species diversification and habitat fragmentation. In addition, we discovered that the deserts and the Helan Mountains acted as effective geographic barriers that promoting the intraspecific diversity of P. lanata.

journal_name

PeerJ

journal_title

PeerJ

authors

Zhao Y,Zhang H,Pan B,Zhang M

doi

10.7717/peerj.6264

subject

Has Abstract

pub_date

2019-01-24 00:00:00

pages

e6264

issn

2167-8359

pii

6264

journal_volume

7

pub_type

杂志文章

相关文献

PeerJ文献大全
  • Interspecific differences of stridulatory signals in three species of bark beetles from the genus Polygraphus Er. (Coleoptera: Curculionidae, Scolytinae) inhabiting the island of Sakhalin.

    abstract::Stridulatory signals are involved in conspecific interactions between bark beetles (Coleoptera: Curculionidae, Scolytinae). In this study, we compared the qualitative profiles of acoustic signals in three species from the genus Polygraphus Er. Sympatry can be periodically observed in two of them -P. proximus and P. su...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.8281

    authors: Kerchev IA

    更新日期:2020-01-02 00:00:00

  • Effects of preservation duration at 4 °C on the quality of RNA in rabbit blood specimens.

    abstract::A prolonged preservation duration of blood specimens at 4 °C may occur due to the distance from collection points to storage facilities in many biobanks, especially for multicenter studies. This could lead to RNA degradation, affecting downstream analyses. However, effects of preservation durations at 4 °C on RNA qual...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.8940

    authors: Song J,Zhou J

    更新日期:2020-04-10 00:00:00

  • Asymmetrical dispersal and putative isolation-by-distance of an intertidal blenniid across the Atlantic-Mediterranean divide.

    abstract::Transition zones are of high evolutionary interest because unique patterns of spatial variation are often retained. Here, we investigated the phylogeography of the peacock blenny, Salaria pavo, a small marine intertidal fish that inhabits rocky habitats of the Mediterranean and the adjacent Atlantic Ocean. We screened...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.3195

    authors: Castilho R,Cunha RL,Faria C,Velasco EM,Robalo JI

    更新日期:2017-04-27 00:00:00

  • Barefoot running does not affect simple reaction time: an exploratory study.

    abstract:Background:Converging evidence comparing barefoot (BF) and shod (SH) running highlights differences in foot-strike patterns and somatosensory feedback, among others. Anecdotal evidence from SH runners attempting BF running suggests a greater attentional demand may be experienced during BF running. However, little work ...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.4605

    authors: Snow NJ,Blair JFL,MacDonald GZ,Byrne JM,Basset FA

    更新日期:2018-04-09 00:00:00

  • Microbial communities mediating algal detritus turnover under anaerobic conditions.

    abstract:BACKGROUND:Algae encompass a wide array of photosynthetic organisms that are ubiquitously distributed in aquatic and terrestrial habitats. Algal species often bloom in aquatic ecosystems, providing a significant autochthonous carbon input to the deeper anoxic layers in stratified water bodies. In addition, various alga...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.2803

    authors: Morrison JM,Murphy CL,Baker K,Zamor RM,Nikolai SJ,Wilder S,Elshahed MS,Youssef NH

    更新日期:2017-01-10 00:00:00

  • N-acetylcysteine protects against motor, optomotor and morphological deficits induced by 6-OHDA in zebrafish larvae.

    abstract:Background:Parkinson's disease (PD) is the second most common neurodegenerative disorder. In addition to its highly debilitating motor symptoms, non-motor symptoms may precede their motor counterparts by many years, which may characterize a prodromal phase of PD. A potential pharmacological strategy is to introduce neu...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.4957

    authors: Benvenutti R,Marcon M,Reis CG,Nery LR,Miguel C,Herrmann AP,Vianna MRM,Piato A

    更新日期:2018-06-01 00:00:00

  • Visible and near-infrared radiation may be transmitted or absorbed differently by beetle elytra according to habitat preference.

    abstract:Background:The exoskeleton of an insect could be an important factor in the success of its evolutionary process. This reaches its maximum expression in beetles, which constitute the most diversified animal taxon. The involvement in the management of environmental radiation could be one of the most important functions o...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.8104

    authors: Cuesta E,Lobo JM

    更新日期:2019-11-25 00:00:00

  • Rapid screening mutations of first-line-drug-resistant genes in Mycobacterium tuberculosis strains by allele-specific real-time quantitative PCR.

    abstract::Tuberculosis (TB) is a worldwide health, economic, and social burden, especially in developing countries. Drug-resistant TB is the most serious type of this burden. Thus, it is necessary to screen drug-resistant mutations by using a simple and rapid detection method. A total of 32 pairs of allele-specific PCR (AS-PCR)...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.6696

    authors: Yang P,Song Y,Xia X,Zhang AM

    更新日期:2019-04-01 00:00:00

  • A probe-based qRT-PCR method to profile immunological gene expression in blood of captive beluga whales (Delphinapterus leucas).

    abstract::Cytokines are fundamental for a functioning immune system, and thus potentially serve as important indicators of animal health. Quantitation of mRNA using quantitative reverse transcription polymerase chain reaction (qRT-PCR) is an established immunological technique. It is particularly suitable for detecting the expr...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.3840

    authors: Tsai MA,Chen IH,Wang JH,Chou SJ,Li TH,Leu MY,Ho HK,Yang WC

    更新日期:2017-09-27 00:00:00

  • Cordycepin inhibits LPS-induced inflammatory and matrix degradation in the intervertebral disc.

    abstract::Cordycepin is a component of the extract obtained from Cordyceps militaris and has many biological activities, including anti-cancer, anti-metastatic and anti-inflammatory effects. Intervertebral disc degeneration (IDD) is a degenerative disease that is closely related to the inflammation of nucleus pulposus (NP) cell...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.1992

    authors: Li Y,Li K,Mao L,Han X,Zhang K,Zhao C,Zhao J

    更新日期:2016-05-10 00:00:00

  • Toward an integrated approach to crop production and pollination ecology through the application of remote sensing.

    abstract::Insect pollinators provide an essential ecosystem service by transferring pollen to crops and native vegetation. The extent to which pollinator communities vary both spatially and temporally has important implications for ecology, conservation and agricultural production. However, understanding the complex interaction...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.5806

    authors: Willcox BK,Robson AJ,Howlett BG,Rader R

    更新日期:2018-10-19 00:00:00

  • Life history response of Echinops gmelinii Turcz. to variation in the rainfall pattern in a temperate desert.

    abstract:Background:Current and future changes in rainfall amount and frequency may particularly impact annual plants in desert ecosystems. The winter annual Echinops gmelinii Turcz. is widely distributed in the desert habitats of northern China and is a dominant pioneer annual plant following sand stabilization in the Tengger ...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.8159

    authors: Wang Y,Li X,Liu L,Zhao J,Sun J

    更新日期:2019-11-29 00:00:00

  • TET1 may contribute to hypoxia-induced epithelial to mesenchymal transition of endometrial epithelial cells in endometriosis.

    abstract:Background:Endometriosis (EMs) is a non-malignant gynecological disease, whose pathogenesis remains to be clarified. Recent studies have found that hypoxia induces epithelial-mesenchymal transition (EMT) as well as epigenetic modification in EMs. However, the relationship between EMT and demethylation modification unde...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.9950

    authors: Wu J,Li X,Huang H,Xia X,Zhang M,Fang X

    更新日期:2020-09-15 00:00:00

  • Co-occurrence patterns of litter decomposing communities in mangroves indicate a robust community resistant to disturbances.

    abstract:Background:Mangroves are important coastal ecosystems known for high photosynthetic productivity and the ability to support marine food chains through supply of dissolved carbon or particular organic matter. Most of the carbon found in mangroves is produced by its vegetation and is decomposed in root associated sedimen...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.5710

    authors: Taketani RG,Moitinho MA,Mauchline TH,Melo IS

    更新日期:2018-10-04 00:00:00

  • Full-length genome characterization and phylogenetic analysis of SARS-CoV-2 virus strains from Yogyakarta and Central Java, Indonesia.

    abstract:Background:Recently, SARS-CoV-2 virus with the D614G mutation has become a public concern due to rapid dissemination of this variant across many countries. Our study aims were (1) to report full-length genome sequences of SARS-CoV-2 collected from four COVID-19 patients in the Special Region of Yogyakarta and Central J...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.10575

    authors: Gunadi,Wibawa H,Marcellus,Hakim MS,Daniwijaya EW,Rizki LP,Supriyati E,Nugrahaningsih DAA,Afiahayati,Siswanto,Iskandar K,Anggorowati N,Kalim AS,Puspitarani DA,Athollah K,Arguni E,Nuryastuti T,Wibawa T

    更新日期:2020-12-21 00:00:00

  • ZFPM2-AS1 promotes the proliferation, migration, and invasion of human non-small cell lung cancer cells involving the JAK-STAT and AKT pathways.

    abstract:Purpose:Recent studies have determined that long non-coding RNAs (lncRNAs) are potential prognostic biomarkers for non-small cell lung cancers (NSCLCs). The purpose of this study was to analyze the function and associated pathways of zinc finger protein multitype 2 antisense RNA 1 (ZFPM2-AS1) in NSCLC cells. Methods:W...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.10225

    authors: Wang X,Tang J,Zhao J,Lou B,Li L

    更新日期:2020-10-26 00:00:00

  • Effects of stream grazers with different functional traits on the spatial heterogeneity of periphyton mats.

    abstract:Background:Grazing activity on periphytic mats determines mat structure and spatial heterogeneity. Spatial complexity in stream periphyton is highly divergent and may depend on the functional traits of the different primary consumers species (i.e., grazers) such as mouthpart morphology, feeding behavior, and feeding ac...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.6747

    authors: Katano I,Doi H

    更新日期:2019-06-05 00:00:00

  • North Atlantic Oscillation drives the annual occurrence of an isolated, peripheral population of the brown seaweed Fucus guiryi in the Western Mediterranean Sea.

    abstract::The canopy-forming, intertidal brown (Phaeophyceae) seaweed Fucus guiryi is distributed along the cold-temperate and warm-temperate coasts of Europe and North Africa. Curiously, an isolated population develops at Punta Calaburras (Alboran Sea, Western Mediterranean) but thalli are not present in midsummer every year, ...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.4048

    authors: Melero-Jiménez IJ,Salvo AE,Báez JC,Bañares-España E,Reul A,Flores-Moya A

    更新日期:2017-11-14 00:00:00

  • Short stature and SHOX (Short stature homeobox) variants-efficacy of screening using various strategies.

    abstract:Background:SHOX mutations have previously been described as causes of Léri-Weill dyschondrosteosis (LWD), Langer mesomelic dysplasia (LMD), and idiopathic short stature. The loss of X chromosome-Turner syndrome or mosaic 45,X/46,XX or 46,XY-also leads to the heterozygous loss of SHOX in patients with short stature only...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.10236

    authors: Capkova P,Capkova Z,Rohon P,Adamová K,Zapletalova J

    更新日期:2020-11-17 00:00:00

  • Comparison of physiological responses of Arabian striped hyaena (Hyaena hyaena sultana) to effective immobilisations with ketamine-medetomidine and ketamine-xylazine in (semi-) captive conditions.

    abstract::Chemical immobilisation is an integral component for the conservation of wild animals and can be stressful if proper protocols are not administered. References on the immobilisation of Arabian striped hyaena (Hyaena hyaena sultana) are scarce. The current study was designed to evaluate the physiological and clinical r...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.7326

    authors: Mehmood A,Abid S,Hejcmanová P,Asadi MA,Kabeer B,Jilani MJ,Bilal S,Ashraf MW

    更新日期:2019-07-26 00:00:00

  • Necessity of electrically conductive pili for methanogenesis with magnetite stimulation.

    abstract:Background:Magnetite-mediated direct interspecies electron transfer (DIET) between Geobacter and Methanosarcina species is increasingly being invoked to explain magnetite stimulation of methane production in anaerobic soils and sediments. Although magnetite-mediated DIET has been documented in defined co-cultures reduc...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.4541

    authors: Wang O,Zheng S,Wang B,Wang W,Liu F

    更新日期:2018-03-21 00:00:00

  • Synchrotron scanning reveals the palaeoneurology of the head-butting Moschops capensis (Therapsida, Dinocephalia).

    abstract::Dinocephalian therapsids are renowned for their massive, pachyostotic and ornamented skulls adapted for head-to-head fighting during intraspecific combat. Synchrotron scanning of the tapinocephalid Moschops capensis reveals, for the first time, numerous anatomical adaptations of the central nervous system related to t...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.3496

    authors: Benoit J,Manger PR,Norton L,Fernandez V,Rubidge BS

    更新日期:2017-08-10 00:00:00

  • Prioritizing riparian corridors for ecosystem restoration in urbanizing watersheds.

    abstract:Background:Riparian corridors can affect nutrient, organic matter, and sediment transport, all of which shape water quality in streams and connected downstream waters. When functioning riparian corridors remain intact, they provide highly valued water quality ecosystem services. However, in rapidly urbanizing watershed...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.8174

    authors: Atkinson SF,Lake MC

    更新日期:2020-02-04 00:00:00

  • Association between herd management practices and antimicrobial resistance in Salmonella spp. from cull dairy cattle in Central California.

    abstract:Background:In this study cull dairy cows from six California dairy herds were sampled seasonally over the course of a year. The objectives were to determine the prevalence of antimicrobial resistant (AMR) Salmonella spp. shed in cull cow feces, and the factors associated with fecal shedding of AMR and multidrug resista...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.6546

    authors: Pereira R,Williams DR,Rossitto P,Adaska J,Okello E,Champagne J,Lehenbauer TW,Li X,Chase J,Nguyen T,Pires AFA,Atwill ER,Aly SS

    更新日期:2019-03-21 00:00:00

  • Identification of phenolic secondary metabolites from Schotia brachypetala Sond. (Fabaceae) and demonstration of their antioxidant activities in Caenorhabditis elegans.

    abstract:BACKGROUND:Schotia brachypetala Sond. (Fabaceae) is an endemic tree of Southern Africa whose phytochemistry and pharmacology were slightly studied. The present work aimed at profiling the major phenolics compounds present in the hydro-alcohol extract from S. brachypetala leaves (SBE) using LC/HRESI/MS/MS and NMR and pr...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.2404

    authors: Sobeh M,ElHawary E,Peixoto H,Labib RM,Handoussa H,Swilam N,El-Khatib AH,Sharapov F,Mohamed T,Krstin S,Linscheid MW,Singab AN,Wink M,Ayoub N

    更新日期:2016-11-15 00:00:00

  • Different environmental gradients affect different measures of snake β-diversity in the Amazon rainforests.

    abstract::Mechanisms generating and maintaining biodiversity at regional scales may be evaluated by quantifying β-diversity along environmental gradients. Differences in assemblages result in biotic complementarities and redundancies among sites, which may be quantified through multi-dimensional approaches incorporating taxonom...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.5628

    authors: de Fraga R,Ferrão M,Stow AJ,Magnusson WE,Lima AP

    更新日期:2018-09-24 00:00:00

  • Three-dimensional thoracic and pelvic kinematics and arm swing maximum velocity in older adults using inertial sensor system.

    abstract::Understanding characteristics of torso motion and arm swing of older adults is important. A comprehensive database of three-dimensional thoracic and pelvic kinematics and arm swing maximum velocity of older adults during overground walking is still lacking. Moreover, the relationships between these variables are not f...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.9329

    authors: Fang X,Jiang Z

    更新日期:2020-07-07 00:00:00

  • Influence of age and sex on winter site fidelity of sanderlings Calidris alba.

    abstract::Many migratory bird species show high levels of site fidelity to their wintering sites, which confers advantages due to prior knowledge, but may also limit the ability of the individual to move away from degrading sites or to detect alternative foraging opportunities. Winter site fidelity often varies among age groups...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.2517

    authors: Lourenço PM,Alves JA,Reneerkens J,Loonstra AJ,Potts PM,Granadeiro JP,Catry T

    更新日期:2016-09-28 00:00:00

  • Genome-wide identification and expression analysis of the WRKY genes in sugar beet (Beta vulgaris L.) under alkaline stress.

    abstract:Background:The WRKY transcription factor family plays crucial roles in many aspects of physiological processes and adaption to environment. Although the WRKY genes have been widely identified in various plant species, the structure and function of the WRKY family in sugar beet (Beta vulgaris L.) remains unknown. Metho...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.7817

    authors: Wu GQ,Li ZQ,Cao H,Wang JL

    更新日期:2019-10-14 00:00:00

  • Coral larvae for restoration and research: a large-scale method for rearing Acropora millepora larvae, inducing settlement, and establishing symbiosis.

    abstract::Here we describe an efficient and effective technique for rearing sexually-derived coral propagules from spawning through larval settlement and symbiont uptake with minimal impact on natural coral populations. We sought to maximize larval survival while minimizing expense and daily husbandry maintenance by experimenta...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.3732

    authors: Pollock FJ,Katz SM,van de Water JAJM,Davies SW,Hein M,Torda G,Matz MV,Beltran VH,Buerger P,Puill-Stephan E,Abrego D,Bourne DG,Willis BL

    更新日期:2017-09-06 00:00:00