Satellite DNA Mapping in Pseudis fusca (Hylidae, Pseudinae) Provides New Insights into Sex Chromosome Evolution in Paradoxical Frogs.

Abstract:

:In the frog genus Pseudis, previous works found a sex-linked heteromorphism of the PcP190 satellite DNA in the nucleolus organizer region (NOR)-bearing chromosome pairs of Pseudis bolbodactyla and Pseudis tocantins, which possess a ZZ/ZW sex determination system. A pericentromeric inversion was inferred to have occurred during W chromosome evolution, moving a chromosomal cluster enriched by the PcP190 from the short arm (as observed in P. bolbodactyla) to the NOR-bearing long arm (as observed in P. tocantins). However, whether such an inversion happened in P. tocantins or in the common ancestor of Pseudis fusca and P. tocantins remained unclear. To assess this question, we mapped PcP190 in the karyotype of P. fusca from three distinct localities. Southern blotting was used to compare males and females. The mitochondrial H1 fragment (which contains the 12S ribosomal RNA (rRNA), tRNAval, and 16S rRNA genes) and cytochrome b gene were partially sequenced, and a species tree was inferred to guide our analysis. Pseudis fusca specimens were placed together as the sister group of P. tocantins, but based on genetic distance, one of the analyzed populations is probably an undescribed species. A cluster of PcP190, located in the long arm of chromosome 7, is sex linked in this putative new species but not in the remaining P. fusca. We could infer that the pericentromeric inversion that moved the PcP190 site to the NOR-bearing chromosome arm (long arm) occurred in the common ancestor of P. fusca, the putative undescribed species, and P. tocantins.

journal_name

Genes (Basel)

journal_title

Genes

authors

Gatto KP,Seger KR,Garcia PCA,Lourenço LB

doi

10.3390/genes10020160

subject

Has Abstract

pub_date

2019-02-19 00:00:00

issue

2

issn

2073-4425

pii

genes10020160

journal_volume

10

pub_type

杂志文章

相关文献

Genes文献大全
  • Genome-Wide Identification of Na+/H+ Antiporter (NHX) Genes in Sugar Beet (Beta vulgaris L.) and Their Regulated Expression under Salt Stress.

    abstract::Salinity is one of the major environment factors that limits the growth of plants and the productivity of crops worldwide. It has been shown that Na+ transporters play a central role in salt tolerance and development of plants. The objective of this study was to identify Na+/H+ antiporter (NHX) genes and investigate t...

    journal_title:Genes

    pub_type: 杂志文章

    doi:10.3390/genes10050401

    authors: Wu GQ,Wang JL,Li SJ

    更新日期:2019-05-27 00:00:00

  • A Wheat β-Patchoulene Synthase Confers Resistance Against Herbivory in Transgenic Arabidopsis.

    abstract::Terpenoids play important roles in plant defense. Although some terpene synthases have been characterized, terpenoids and their biosynthesis in wheat (Triticumaestivum L.) still remain largely unknown. Here, we describe the identification of a terpene synthase gene in wheat. It encodes a sesquiterpene synthase that ca...

    journal_title:Genes

    pub_type: 杂志文章

    doi:10.3390/genes10060441

    authors: Pu Q,Liang J,Shen Q,Fu J,Pu Z,Liu J,Wang X,Wang Q

    更新日期:2019-06-10 00:00:00

  • The Global Hepatitis B Virus Genotype Distribution Approximated from Available Genotyping Data.

    abstract::Hepatitis B virus (HBV) is divided into nine genotypes, A to I. Currently, it remains unclear how the individual genotypes contribute to the estimated 250 million chronic HBV infections. We performed a literature search on HBV genotyping data throughout the world. Over 900 publications were assessed and data were extr...

    journal_title:Genes

    pub_type: 杂志文章

    doi:10.3390/genes9100495

    authors: Velkov S,Ott JJ,Protzer U,Michler T

    更新日期:2018-10-15 00:00:00

  • Pervasive Modulation of Obesity Risk by the Environment and Genomic Background.

    abstract::The prevalence of the so-called diseases of affluence, such as type 2 diabetes or hypertension, has increased dramatically in the last two generations. Although genome-wide association studies (GWAS) have discovered hundreds of genes involved in disease etiology, the sudden increase in disease incidence suggests a maj...

    journal_title:Genes

    pub_type: 杂志文章

    doi:10.3390/genes9080411

    authors: Nagpal S,Gibson G,Marigorta UM

    更新日期:2018-08-14 00:00:00

  • Genome-Wide Identification, Characterization and Expression Profiling of ADF Family Genes in Solanum lycopersicum L.

    abstract::The actin depolymerizing factor (ADF) proteins have growth, development, defense-related and growth regulatory functions in plants. The present study used genome-wide analysis to investigate ADF family genes in tomato. Eleven tomato ADF genes were identified and differential expression patterns were found in different...

    journal_title:Genes

    pub_type: 杂志文章

    doi:10.3390/genes7100079

    authors: Khatun K,Robin AH,Park JI,Kim CK,Lim KB,Kim MB,Lee DJ,Nou IS,Chung MY

    更新日期:2016-09-29 00:00:00

  • MicroRNA-106a-5p Inhibited C2C12 Myogenesis via Targeting PIK3R1 and Modulating the PI3K/AKT Signaling.

    abstract::The microRNA (miR)-17 family is widely expressed in mammalian tissues and play important roles in various physiological and pathological processes. Here, the functions of miR-106a-5p, a member of miR-17 family, were explored during myogenic differentiation in C2C12 cell line. First, miR-106a-5p was found to be relativ...

    journal_title:Genes

    pub_type: 杂志文章

    doi:10.3390/genes9070333

    authors: Li X,Zhu Y,Zhang H,Ma G,Wu G,Xiang A,Shi X,Yang GS,Sun S

    更新日期:2018-07-02 00:00:00

  • RNA Modifications Modulate Activation of Innate Toll-Like Receptors.

    abstract::Self/foreign discrimination by the innate immune system depends on receptors that identify molecular patterns as associated to pathogens. Among others, this group includes endosomal Toll-like receptors, among which Toll-like receptors (TLR) 3, 7, 8, and 13 recognize and discriminate mammalian from microbial, potential...

    journal_title:Genes

    pub_type: 杂志文章,评审

    doi:10.3390/genes10020092

    authors: Freund I,Eigenbrod T,Helm M,Dalpke AH

    更新日期:2019-01-29 00:00:00

  • The Puzzling Fate of a Lupin Chromosome Revealed by Reciprocal Oligo-FISH and BAC-FISH Mapping.

    abstract::Old World lupins constitute an interesting model for evolutionary research due to diversity in genome size and chromosome number, indicating evolutionary genome reorganization. It has been hypothesized that the polyploidization event which occurred in the common ancestor of the Fabaceae family was followed by a lineag...

    journal_title:Genes

    pub_type: 杂志文章

    doi:10.3390/genes11121489

    authors: Bielski W,Książkiewicz M,Šimoníková D,Hřibová E,Susek K,Naganowska B

    更新日期:2020-12-10 00:00:00

  • Targeting MDM4 Splicing in Cancers.

    abstract::MDM4, an essential negative regulator of the P53 tumor suppressor, is frequently overexpressed in cancer cells that harbor a wild-type P53. By a mechanism based on alternative splicing, the MDM4 gene generates two mutually exclusive isoforms: MDM4-FL, which encodes the full-length MDM4 protein, and a shorter splice va...

    journal_title:Genes

    pub_type: 杂志文章,评审

    doi:10.3390/genes8020082

    authors: Bardot B,Toledo F

    更新日期:2017-02-20 00:00:00

  • Next generation DNA sequencing and the future of genomic medicine.

    abstract::In the years since the first complete human genome sequence was reported, there has been a rapid development of technologies to facilitate high-throughput sequence analysis of DNA (termed "next-generation" sequencing). These novel approaches to DNA sequencing offer the promise of complete genomic analysis at a cost fe...

    journal_title:Genes

    pub_type: 杂志文章

    doi:10.3390/genes1010038

    authors: Anderson MW,Schrijver I

    更新日期:2010-05-25 00:00:00

  • In Vitro Fertilisation (IVF) Associated with Preimplantation Genetic Testing for Monogenic Diseases (PGT-M) in a Romanian Carrier Couple for Congenital Disorder of Glycosylation Type Ia (CDG-Ia): A Case Report.

    abstract::Background: Congenital disorder of glycosylation (CDG) is a severe morphogenic and metabolic disorder that affects all of the systems of organs and is caused by a mutation of the gene PMM2, having a mortality rate of 20% during the first months of life. Results: Here we report the outcome of an in vitro fertilisation ...

    journal_title:Genes

    pub_type:

    doi:10.3390/genes11060697

    authors: Doroftei B,Nemtanu L,Ilie OD,Simionescu G,Ivanov I,Anton E,Puiu M,Maftei R

    更新日期:2020-06-25 00:00:00

  • Combining Random Forests and a Signal Detection Method Leads to the Robust Detection of Genotype-Phenotype Associations.

    abstract::Genome wide association studies (GWAS) are a well established methodology to identify genomic variants and genes that are responsible for traits of interest in all branches of the life sciences. Despite the long time this methodology has had to mature the reliable detection of genotype-phenotype associations is still ...

    journal_title:Genes

    pub_type: 杂志文章

    doi:10.3390/genes11080892

    authors: Ramzan F,Gültas M,Bertram H,Cavero D,Schmitt AO

    更新日期:2020-08-05 00:00:00

  • Cytogenetics in Arctica islandica (Bivalvia, Arctidae): the Longest Lived Non-Colonial Metazoan.

    abstract::Due to its extraordinary longevity and wide distribution, the ocean quahog Arctica islandica has become an important species model in both aging and environmental change research. Notwithstanding that, most genetic studies on ocean quahogs have been focused on fishery related, phylogeographic and phylogenetic aspects ...

    journal_title:Genes

    pub_type: 杂志文章

    doi:10.3390/genes9060299

    authors: García-Souto D,Pasantes JJ

    更新日期:2018-06-13 00:00:00

  • CircRNA-006258 Sponge-Adsorbs miR-574-5p to Regulate Cell Growth and Milk Synthesis via EVI5L in Goat Mammary Epithelial Cells.

    abstract::The development of the udder and the milk yield are closely related to the number and vitality of mammary epithelial cells. Many previous studies have proved that non-coding RNAs (ncRNAs) are widely involved in mammary gland development and the physiological activities of lactation. Our laboratory previous sequencing ...

    journal_title:Genes

    pub_type: 杂志文章

    doi:10.3390/genes11070718

    authors: Zhang M,Ma L,Liu Y,He Y,Li G,An X,Cao B

    更新日期:2020-06-28 00:00:00

  • Genome-Wide Identification and Analysis of P-Type Plasma Membrane H+-ATPase Sub-Gene Family in Sunflower and the Role of HHA4 and HHA11 in the Development of Salt Stress Resistance.

    abstract::The P-type plasma membrane (PM) H+-ATPase plays a major role during the growth and development of a plant. It is also involved in plant resistance to a variety of biotic and abiotic factors, including salt stress. The PM H+-ATPase gene family has been well characterized in Arabidopsis and other crop plants such as ric...

    journal_title:Genes

    pub_type: 杂志文章

    doi:10.3390/genes11040361

    authors: Xu Z,Marowa P,Liu H,Du H,Zhang C,Li Y

    更新日期:2020-03-27 00:00:00

  • An Independent Locus Upstream of ASIP Controls Variation in the Shade of the Bay Coat Colour in Horses.

    abstract::Novel coat colour phenotypes often emerge during domestication, and there is strong evidence of genetic selection for the two main genes that control base coat colour in horses-ASIP and MC1R. These genes direct the type of pigment produced, red pheomelanin (MC1R) or black eumelanin (ASIP), as well as the relative conc...

    journal_title:Genes

    pub_type: 杂志文章

    doi:10.3390/genes11060606

    authors: Corbin LJ,Pope J,Sanson J,Antczak DF,Miller D,Sadeghi R,Brooks SA

    更新日期:2020-05-30 00:00:00

  • Comparison of the fecal microbiota in feral and domestic goats.

    abstract::Animals have co-evolved with mutualistic microbial communities, known as the microbiota, which are essential for organ development and function. We hypothesize that modern animal husbandry practices exert an impact on the intestinal microbiota. In this study, we compared the structure of the fecal microbiota between f...

    journal_title:Genes

    pub_type: 杂志文章

    doi:10.3390/genes3010001

    authors: De Jesús-Laboy KM,Godoy-Vitorino F,Piceno YM,Tom LM,Pantoja-Feliciano IG,Rivera-Rivera MJ,Andersen GL,Domínguez-Bello MG

    更新日期:2011-12-21 00:00:00

  • Properties and Therapeutic Implications of an Enigmatic D477G RPE65 Variant Associated with Autosomal Dominant Retinitis Pigmentosa.

    abstract::RPE65 isomerase, expressed in the retinal pigmented epithelium (RPE), is an enzymatic component of the retinoid cycle, converting all-trans retinyl ester into 11-cis retinol, and it is essential for vision, because it replenishes the photon capturing 11-cis retinal. To date, almost 200 loss-of-function mutations have ...

    journal_title:Genes

    pub_type: 杂志文章,评审

    doi:10.3390/genes11121420

    authors: Kiang AS,Kenna PF,Humphries MM,Ozaki E,Koenekoop RK,Campbell M,Farrar GJ,Humphries P

    更新日期:2020-11-27 00:00:00

  • Special Issue: Fungal Pathogenesis in Humans: The Growing Threat.

    abstract::Approximately 150 fungal species are considered as primary pathogens of humans and animals[...]. ...

    journal_title:Genes

    pub_type: 社论

    doi:10.3390/genes10020136

    authors: Leal F

    更新日期:2019-02-12 00:00:00

  • DynSig: Modelling Dynamic Signaling Alterations along Gene Pathways for Identifying Differential Pathways.

    abstract::Although a number of methods have been proposed for identifying differentially expressed pathways (DEPs), few efforts consider the dynamic components of pathway networks, i.e., gene links. We here propose a signaling dynamics detection method for identification of DEPs, DynSig, which detects the molecular signaling ch...

    journal_title:Genes

    pub_type: 杂志文章

    doi:10.3390/genes9070323

    authors: Shi M,Chong Y,Shen W,Xie XP,Wang HQ

    更新日期:2018-06-27 00:00:00

  • Structure and Sequence of the Sex Determining Locus in Two Wild Populations of Nile Tilapia.

    abstract::In domesticated strains of the Nile tilapia, phenotypic sex has been linked to genetic variants on linkage groups 1, 20 and 23. This diversity of sex-loci might reflect a naturally polymorphic sex determination system in Nile tilapia, or it might be an artefact arising from the process of domestication. Here, we searc...

    journal_title:Genes

    pub_type: 杂志文章

    doi:10.3390/genes11091017

    authors: Triay C,Conte MA,Baroiller JF,Bezault E,Clark FE,Penman DJ,Kocher TD,D'Cotta H

    更新日期:2020-08-29 00:00:00

  • DNA Replication Through Strand Displacement During Lagging Strand DNA Synthesis in Saccharomyces cerevisiae.

    abstract::This review discusses a set of experimental results that support the existence of extended strand displacement events during budding yeast lagging strand DNA synthesis. Starting from introducing the mechanisms and factors involved in leading and lagging strand DNA synthesis and some aspects of the architecture of the ...

    journal_title:Genes

    pub_type: 杂志文章,评审

    doi:10.3390/genes10020167

    authors: Giannattasio M,Branzei D

    更新日期:2019-02-21 00:00:00

  • Constructing the Microbial Association Network from Large-Scale Time Series Data Using Granger Causality.

    abstract::The increasing availability of large-scale time series data allows the inference of microbial community dynamics by association network analysis. However, correlation-based association network analyses are noninformative of causal, mediating and time-dependent relationships between microbial community functional facto...

    journal_title:Genes

    pub_type: 杂志文章

    doi:10.3390/genes10030216

    authors: Ai D,Li X,Liu G,Liang X,Xia LC

    更新日期:2019-03-14 00:00:00

  • Genome Maintenance by DNA Helicase B.

    abstract::DNA Helicase B (HELB) is a conserved helicase in higher eukaryotes with roles in the initiation of DNA replication and in the DNA damage and replication stress responses. HELB is a predominately nuclear protein in G1 phase where it is involved in initiation of DNA replication through interactions with DNA topoisomeras...

    journal_title:Genes

    pub_type: 杂志文章,评审

    doi:10.3390/genes11050578

    authors: Hazeslip L,Zafar MK,Chauhan MZ,Byrd AK

    更新日期:2020-05-21 00:00:00

  • The POU Transcription Factor POU-M2 Regulates Vitellogenin Receptor Gene Expression in the Silkworm, Bombyx mori.

    abstract::Vitellogenin receptors (VgRs) play critical roles in egg formation by transporting vitellogenin (Vg) into oocytes in insects. Although the function of VgR in insects is well studied, the transcriptional regulation of this gene is still unclear. Here, we cloned the promoter of the VgR gene from Bombyx mori (BmVgR), and...

    journal_title:Genes

    pub_type: 杂志文章

    doi:10.3390/genes11040394

    authors: Shen G,Chen E,Ji X,Liu L,Liu J,Hua X,Li D,Xiao Y,Xia Q

    更新日期:2020-04-06 00:00:00

  • A Hybrid Clustering Algorithm for Identifying Cell Types from Single-Cell RNA-Seq Data.

    abstract::Single-cell RNA sequencing (scRNA-seq) has recently brought new insight into cell differentiation processes and functional variation in cell subtypes from homogeneous cell populations. A lack of prior knowledge makes unsupervised machine learning methods, such as clustering, suitable for analyzing scRNA-seq . However,...

    journal_title:Genes

    pub_type: 杂志文章

    doi:10.3390/genes10020098

    authors: Zhu X,Li HD,Xu Y,Guo L,Wu FX,Duan G,Wang J

    更新日期:2019-01-29 00:00:00

  • Identification of Histone H3 (HH3) Genes in Gossypium hirsutum Revealed Diverse Expression During Ovule Development and Stress Responses.

    abstract::Histone acts as the core for nucleosomes and is a key protein component of chromatin. Among different histone variants, histone H3 (HH3) variants have been reported to play vital roles in plant development. However, biological information and evolutionary relationships of HH3 genes in cotton remain to be elucidated. T...

    journal_title:Genes

    pub_type: 杂志文章

    doi:10.3390/genes10050355

    authors: Qanmber G,Ali F,Lu L,Mo H,Ma S,Wang Z,Yang Z

    更新日期:2019-05-09 00:00:00

  • Identification of an Embryonic Cell-Specific Region within the Pineapple SERK1 Promoter.

    abstract::Plant tissue culture methods, such as somatic embryogenesis, are attractive alternatives to traditional breeding methods for plant propagation. However, they often suffer from limited efficiency. Somatic embryogenesis receptor kinase (SERK)1 is a marker gene of early somatic embryogenesis in several plants, including ...

    journal_title:Genes

    pub_type: 杂志文章

    doi:10.3390/genes10110883

    authors: Luan A,He Y,Xie T,Chen C,Mao Q,Wang X,Li C,Ding Y,Lin W,Liu C,Xia J,He J

    更新日期:2019-11-01 00:00:00

  • Mutational Spectrum and Clinical Features of Patients with LOXHD1 Variants Identified in an 8074 Hearing Loss Patient Cohort.

    abstract::Variants of the LOXHD1 gene, which are expressed in hair cells of the cochlea and vestibule, have been reported to cause a progressive form of autosomal recessive non-syndromic hereditary hearing loss, DFNB77. In this study, genetic screening was conducted on 8074 Japanese hearing loss patients utilizing massively par...

    journal_title:Genes

    pub_type: 杂志文章

    doi:10.3390/genes10100735

    authors: Maekawa K,Nishio SY,Abe S,Goto SI,Honkura Y,Iwasaki S,Kanda Y,Kobayashi Y,Oka SI,Okami M,Oshikawa C,Sakuma N,Sano H,Shirakura M,Uehara N,Usami SI

    更新日期:2019-09-23 00:00:00

  • RNA-Seq Analyses Identify Additivity as the Predominant Gene Expression Pattern in F1 Chicken Embryonic Brain and Liver.

    abstract::The superior performance of hybrids to parents, termed heterosis, has been widely utilized in animal and plant breeding programs, but the molecular mechanism underlying heterosis remains an enigma. RNA-Seq provides a novel way to investigate heterosis at the transcriptome-wide level, because gene expression functions ...

    journal_title:Genes

    pub_type: 杂志文章

    doi:10.3390/genes10010027

    authors: Zhuo Z,Lamont SJ,Abasht B

    更新日期:2019-01-07 00:00:00