Abstract:
:Histone acts as the core for nucleosomes and is a key protein component of chromatin. Among different histone variants, histone H3 (HH3) variants have been reported to play vital roles in plant development. However, biological information and evolutionary relationships of HH3 genes in cotton remain to be elucidated. The current study identified 34 HH3 genes in Gossypium hirsutum. Phylogenetic analysis classified HH3 genes of 19 plant species into eight distinct clades. Sequence logos analysis among Arabidopsis, rice, and G. hirsutum amino acid residues showed higher conservation in amino acids. Using collinearity analysis, we identified 81 orthologous/paralogous gene pairs among the four genomes (A, D, At, and Dt) of cotton. Further, orthologous/paralogous and the Ka/Ks ratio demonstrated that cotton HH3 genes experienced strong purifying selection pressure with restricted functional divergence resulting from segmental and whole genome duplication. Expression pattern analysis indicated that GhHH3 genes were preferentially expressed in cotton ovule tissues. Additionally, GhHH3 gene expression can be regulated by abiotic stresses (cold, heat, sodium chloride (NaCl), and polyethylene glycol (PEG)) and phytohormonal (brassinolide (BL), gibberellic acid (GA), indole-3-acetic acid (IAA), salicylic acid (SA), and methyl jasmonate (MeJA)) treatments, suggesting that GhHH3 genes might play roles in abiotic and hormone stress resistance. Taken together, this work provides important information to decipher complete molecular and physiological functions of HH3 genes in cotton.
journal_name
Genes (Basel)journal_title
Genesauthors
Qanmber G,Ali F,Lu L,Mo H,Ma S,Wang Z,Yang Zdoi
10.3390/genes10050355subject
Has Abstractpub_date
2019-05-09 00:00:00issue
5issn
2073-4425pii
genes10050355journal_volume
10pub_type
杂志文章相关文献
Genes文献大全abstract::Ubiquitous exposure to bisphenol A (BPA), an endocrine disruptor (ED), has raised concerns for both human and ecosystem health. Epigenetic factors, including microRNAs (miRNAs), are key regulators of gene expression during cancer. The effect of BPA exposure on the zebrafish epigenome remains poorly characterized. Zebr...
journal_title:Genes
pub_type: 杂志文章
doi:10.3390/genes8100269
更新日期:2017-10-13 00:00:00
abstract::Prostate-derived extracellular vesicles (pEVs) may represent a way to selectively transport cargo molecules from the producing cells to the target cells to allow biological events, both in physiological and pathological circumstances. pEVs cargo participates in the modulation of the inflammatory responses in physiolog...
journal_title:Genes
pub_type: 杂志文章
doi:10.3390/genes11121495
更新日期:2020-12-12 00:00:00
abstract::Cystic fibrosis (CF) is an inherited monogenic disorder, amenable to gene-based therapies. Because CF lung disease is currently the major cause of mortality and morbidity, and the lung airway is readily accessible to gene delivery, the major CF gene therapy effort at present is directed to the lung. Although airway ep...
journal_title:Genes
pub_type: 杂志文章
doi:10.3390/genes10010039
更新日期:2019-01-11 00:00:00
abstract::Keratin-associated proteins (KAPs) are structural components of wool and hair fibers. To date, eight high glycine/tyrosine KAP (HGT-KAP) families have been identified in humans, but only three have been identified in sheep. In this study, the putative ovine homolog of the human KAP22-1 gene (KRTAP22-1) was amplified u...
journal_title:Genes
pub_type: 杂志文章
doi:10.3390/genes8010027
更新日期:2017-01-11 00:00:00
abstract::Meat eating quality with a healthy composition hinges on intramuscular fat (IMF), fat melting point (FMP), tenderness, juiciness, flavour and omega-3 long-chain polyunsaturated fatty acids (n-3 LC-PUFA) content. These health-beneficial n-3 LC-PUFA play significant roles in optimal cardiovascular, retinal, maternal and...
journal_title:Genes
pub_type: 杂志文章,评审
doi:10.3390/genes11050587
更新日期:2020-05-25 00:00:00
abstract::Deinococcus species display a high degree of resistance to radiation and desiccation due to their ability to protect critical proteome from oxidatively generated damage; however, the underlying mechanisms are not understood. Comparative analysis of DNA repair proteins reported here has identified 22 conserved signatur...
journal_title:Genes
pub_type: 杂志文章
doi:10.3390/genes9030149
更新日期:2018-03-08 00:00:00
abstract::Soil salinity is a serious threat to plant growth and crop productivity. Tall fescue utilization in saline areas is limited by its inferior salt tolerance. Thus, a transcriptome study is a prerequisite for future research aimed at providing deeper insights into the molecular mechanisms of tall fescue salt tolerance as...
journal_title:Genes
pub_type: 杂志文章
doi:10.3390/genes9100466
更新日期:2018-09-21 00:00:00
abstract::Roan (Rn) horses show a typical seasonal change of color. Their body is covered with colored and white hair. We performed a descriptive statistical analysis of breeding records of Icelandic horses to challenge the hypothesis of roan being lethal in utero under homozygous condition. The roan to non-roan ratio of foals ...
journal_title:Genes
pub_type: 杂志文章
doi:10.3390/genes11060680
更新日期:2020-06-22 00:00:00
abstract::Cytokinin oxidase/dehydrogenases (CKXs) play a critical role in the irreversible degradation of cytokinins, thereby regulating plant growth and development. Brassica napus is one of the most widely cultivated oilseed crops worldwide. With the completion of whole-genome sequencing of B. napus, genome-wide identificatio...
journal_title:Genes
pub_type: 杂志文章
doi:10.3390/genes9030168
更新日期:2018-03-16 00:00:00
abstract::White spot syndrome virus (WSSV), the lone virus of the genus Whispovirus under the family Nimaviridae, is one of the most devastating viruses affecting the shrimp farming industry. Knowledge about this virus, in particular, its evolution history, has been limited, partly due to its large genome and the lack of other ...
journal_title:Genes
pub_type: 杂志文章
doi:10.3390/genes11010094
更新日期:2020-01-14 00:00:00
abstract::Lysosomal storage disorders (LSDs) represent a group of more than 50 severe metabolic diseases caused by the deficiency of specific lysosomal hydrolases, activators, carriers, or lysosomal integral membrane proteins, leading to the abnormal accumulation of substrates within the lysosomes. Numerous mutations have been ...
journal_title:Genes
pub_type: 杂志文章,评审
doi:10.3390/genes9020073
更新日期:2018-02-06 00:00:00
abstract::Maize kernel development is a complex biological process that involves the temporal and spatial expression of many genes and fine gene regulation at a transcriptional and post-transcriptional level, and microRNAs (miRNAs) play vital roles during this process. To gain insight into miRNA-mediated regulation of maize ker...
journal_title:Genes
pub_type: 杂志文章
doi:10.3390/genes8120385
更新日期:2017-12-14 00:00:00
abstract::DNA methylation patterns have been shown to change throughout the normal aging process. Several studies have found epigenetic aging markers using age predictors, but these studies only focused on blood-specific or tissue-common methylation patterns. Here, we constructed nine tissue-specific age prediction models using...
journal_title:Genes
pub_type: 杂志文章
doi:10.3390/genes10110888
更新日期:2019-11-04 00:00:00
abstract::The liver plays a key role in metabolism and affects pig production. However, the functional annotation of noncoding regions of the pig liver remains poorly understood. We revealed the landscape of cis-regulatory elements and their functional characterization in pig liver. We identified 102,373 cis-regulatory elements...
journal_title:Genes
pub_type: 杂志文章
doi:10.3390/genes10050348
更新日期:2019-05-07 00:00:00
abstract::EuAP2 genes are well-known for their role in flower development, a legacy of the founding member of this subfamily of transcription factors, whose mutants lacked petals in Arabidopsis. However, studies of euAP2 genes in several species have accumulated evidence highlighting the diverse roles of euAP2 genes in other as...
journal_title:Genes
pub_type: 杂志文章,评审
doi:10.3390/genes10120994
更新日期:2019-12-01 00:00:00
abstract::In mammals, adenosine (A) to inosine (I) RNA editing is performed by adenosine deaminases acting on RNA (ADAR), ADAR1 and ADAR2 enzymes, encoded by mRNAs that might undergo splicing process. In rat, two splicing events produce several isoforms of ADAR2, called ADAR2a, ADAR2b, ADAR2e, and ADAR2f, but only ADAR2a and AD...
journal_title:Genes
pub_type: 杂志文章
doi:10.3390/genes9020079
更新日期:2018-02-08 00:00:00
abstract::The Muraenidae is one of the largest and most complex anguilliform families. Despite their abundance and important ecological roles, morays are little studied, especially cytogenetically, and both their phylogenetic relationships and the taxonomy of their genera are controversial. With the aim of extending the karyolo...
journal_title:Genes
pub_type: 杂志文章
doi:10.3390/genes11111319
更新日期:2020-11-06 00:00:00
abstract::This special issue of Genes demonstrates clearly that research in epigenetics has proceeded at a very rapid pace in the last decade. [...]. ...
journal_title:Genes
pub_type: 社论
doi:10.3390/genes11010023
更新日期:2019-12-23 00:00:00
abstract::The homeodomain-leucine zipper (HD-Zip) gene family, as plant-specific transcription factors, plays an important role in plant development and growth as well as in the response to diverse stresses. Although HD-Zip genes have been extensively studied in many plants, they had not yet been studied in wheat, especially th...
journal_title:Genes
pub_type: 杂志文章
doi:10.3390/genes9020070
更新日期:2018-02-01 00:00:00
abstract::Lower levels of physical activity (PA) have been associated with increased risk of cardiovascular disease. Worldwide, there is a shift towards a lifestyle with less PA, posing a serious threat to public health. One of the suggested mechanisms behind the association between PA and disease development is through systemi...
journal_title:Genes
pub_type: 杂志文章
doi:10.3390/genes10110908
更新日期:2019-11-07 00:00:00
abstract::Hexokinase (HK) is a key enzyme in chitin biosynthesis in insects and plays an important role in development and energy regulation. It also performs a crucial role in the synthesis of Glucose-6-phosphate and its putative functions are studied via injection of dsRNA corresponding to the hexokinase gene from Cnaphalocro...
journal_title:Genes
pub_type: 杂志文章
doi:10.3390/genes11111258
更新日期:2020-10-26 00:00:00
abstract::The large phenotypic variation in the olfactory bulb may be related to heterogeneity in the progenitor cells. Accordingly, the progeny of subventricular zone (SVZ) progenitor cells that are destined for the olfactory bulb is of particular interest, specifically as there are many facets of these progenitors and their m...
journal_title:Genes
pub_type: 杂志文章
doi:10.3390/genes11030305
更新日期:2020-03-13 00:00:00
abstract::Altered melanosome transport in melanocytes, resulting from variants in the melanophilin (MLPH) gene, are associated with inherited forms of coat color dilution in many species. In dogs, the MLPH gene corresponds to the D locus and two variants, c.-22G > A (d1) and c.705G > C (d2), leading to the dilution of coat colo...
journal_title:Genes
pub_type: 杂志文章
doi:10.3390/genes11060639
更新日期:2020-06-10 00:00:00
abstract::Excessive fat deposition in the hepatocytes, associated with excess dietary fat intake, was related to the occurrence of fatty livers in fish. miR-101b plays the important roles in controlling lipid metabolism, but the underlying mechanism at the post-transcriptional level remains unclear. The purpose of this study is...
journal_title:Genes
pub_type: 杂志文章
doi:10.3390/genes11080861
更新日期:2020-07-29 00:00:00
abstract::We studied and compared the nucleolar expression or nucleoli from specific bivalents in spermatocytes of the standard Mus musculus domesticus 2n=40, of Robertsonian (Rb) homozygotes 2n = 24 and heterozygotes 2n = 32. We analyzed 200 nuclear microspreads of each specific nucleolar chromosome and spermatocyte karyotype,...
journal_title:Genes
pub_type: 杂志文章
doi:10.3390/genes10020120
更新日期:2019-02-06 00:00:00
abstract::Individual cells in an organism are variable, which strongly impacts cellular processes. Advances in sequencing technologies have enabled single-cell genomic analysis to become widespread, addressing shortcomings of analyses conducted on populations of bulk cells. While the field of single-cell plant genomics is in it...
journal_title:Genes
pub_type: 杂志文章,评审
doi:10.3390/genes9010050
更新日期:2018-01-22 00:00:00
abstract::Modulated electromagnetic fields (wEMFs), as generated by modern communication technologies, have raised concerns about adverse health effects. The International Agency for Research on Cancer (IARC) classifies them as "possibly carcinogenic to humans" (Group 2B), yet, the underlying molecular mechanisms initiating and...
journal_title:Genes
pub_type: 杂志文章
doi:10.3390/genes11040347
更新日期:2020-03-25 00:00:00
abstract::Fusarium head blight (FHB), caused primarily by the fungus Fusarium graminearum, is one of the most damaging diseases of wheat, causing significant loss of yield and quality worldwide. Warm and wet conditions during flowering, a lack of resistant wheat varieties, and high inoculum pressure from corn stubble contribute...
journal_title:Genes
pub_type: 杂志文章
doi:10.3390/genes11060699
更新日期:2020-06-25 00:00:00
abstract::Small and isolated populations are subject to the loss of genetic variation as a consequence of inbreeding and genetic drift, which in turn, can affect the fitness and long-term viability of populations. Translocations can be used as an effective conservation tool to combat this loss of genetic diversity through estab...
journal_title:Genes
pub_type: 杂志文章
doi:10.3390/genes10110851
更新日期:2019-10-28 00:00:00
abstract::Hepatic lipase (encoded by LIPC) is a glycoprotein in the triacylglycerol lipase family and mainly synthesized in and secreted from the liver. Previous studies demonstrated that hepatic lipase is crucial for reverse cholesterol transport and modulating metabolism and the plasma levels of several lipoproteins. This stu...
journal_title:Genes
pub_type: 杂志文章
doi:10.3390/genes12020148
更新日期:2021-01-22 00:00:00