Abstract:
:The European Nucleotide Archive (ENA; https://www.ebi.ac.uk/ena), provided from EMBL-EBI, has for more than three decades been responsible for archiving the world's public sequencing data and presenting this important resource to the scientific community to support and accelerate the global research effort. Here, we outline ENA services and content in 2018 and provide an overview of a selection of focus areas of development work: extending data coordination services around ENA, sequence submissions through template expansion, early pre-submission validation tools and our move towards a new browser and retrieval infrastructure.
journal_name
Nucleic Acids Resjournal_title
Nucleic acids researchauthors
Harrison PW,Alako B,Amid C,Cerdeño-Tárraga A,Cleland I,Holt S,Hussein A,Jayathilaka S,Kay S,Keane T,Leinonen R,Liu X,Martínez-Villacorta J,Milano A,Pakseresht N,Rajan J,Reddy K,Richards E,Rosello M,Silvester N,Smidoi
10.1093/nar/gky1078subject
Has Abstractpub_date
2019-01-08 00:00:00pages
D84-D88issue
D1eissn
0305-1048issn
1362-4962pii
5160979journal_volume
47pub_type
杂志文章abstract::In this study, we present the DNA-Binding Site Identifier (DBSI), a new structure-based method for predicting protein interaction sites for DNA binding. DBSI was trained and validated on a data set of 263 proteins (TRAIN-263), tested on an independent set of protein-DNA complexes (TEST-206) and data sets of 29 unbound...
journal_title:Nucleic acids research
pub_type: 杂志文章
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更新日期:2013-09-01 00:00:00
abstract::The pattern of preferential DNA repair of UV-induced pyrimidine dimers was studied in repair-deficient Chinese hamster ovary (CHO) cells transfected with the human excision repair gene, ERCC-1. Repair efficiency was measured in the active dihydrofolate reductase (DHFR) gene and in its flanking, non-transcribed sequenc...
journal_title:Nucleic acids research
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更新日期:1993-02-25 00:00:00
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journal_title:Nucleic acids research
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doi:10.1093/nar/gkx690
更新日期:2017-09-29 00:00:00
abstract::Synonymous codon usage significantly impacts translational and transcriptional efficiency, gene expression, the secondary structure of both mRNA and proteins, and has been implicated in various diseases. However, population-specific differences in codon usage biases remain largely unexplored. Here, we present a web se...
journal_title:Nucleic acids research
pub_type: 杂志文章
doi:10.1093/nar/gkaa863
更新日期:2020-11-04 00:00:00
abstract::The gene for the small subunit of human calcium-activated neutral protease was isolated and sequenced. It is 11 kb long and comprises 11 exons. No TATA or CAT box was found upstream of the possible transcription initiation sites, but there are three so-called G-C box sequences and one G-C box-like sequence, which are ...
journal_title:Nucleic acids research
pub_type: 杂志文章
doi:10.1093/nar/14.22.8805
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journal_title:Nucleic acids research
pub_type: 杂志文章
doi:10.1093/nar/gkaa800
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journal_title:Nucleic acids research
pub_type: 杂志文章
doi:10.1093/nar/3.12.3337
更新日期:1976-12-01 00:00:00
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journal_title:Nucleic acids research
pub_type: 杂志文章
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更新日期:2006-07-01 00:00:00
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更新日期:2013-01-01 00:00:00
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journal_title:Nucleic acids research
pub_type: 杂志文章
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更新日期:1990-01-11 00:00:00
abstract::Genomes mutate and evolve in ways simple (substitution or deletion of bases) and complex (e.g. chromosome shattering). We do not fully understand what types of complex mutation occur, and we cannot routinely characterize arbitrarily-complex mutations in a high-throughput, genome-wide manner. Long-read DNA sequencing m...
journal_title:Nucleic acids research
pub_type: 杂志文章
doi:10.1093/nar/gkx1266
更新日期:2018-02-28 00:00:00
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journal_title:Nucleic acids research
pub_type: 杂志文章
doi:10.1093/nar/gkg392
更新日期:2003-06-01 00:00:00
abstract::Ribosome biogenesis is fundamental for cellular life, but surprisingly little is known about the underlying pathway. In eukaryotes a comprehensive collection of experimentally verified ribosome biogenesis factors (RBFs) exists only for Saccharomyces cerevisiae. Far less is known for other fungi, animals or plants, and...
journal_title:Nucleic acids research
pub_type: 杂志文章
doi:10.1093/nar/gkt1137
更新日期:2014-02-01 00:00:00
abstract::PUF proteins, named for Drosophila Pumilio (PUM) and Caenorhabditis elegans fem-3-binding factor (FBF), recognize specific sequences in the mRNAs they bind and control. RNA binding by classical PUF proteins is mediated by a characteristic PUM homology domain (PUM-HD). The Puf1 and Puf2 proteins possess a distinct arch...
journal_title:Nucleic acids research
pub_type: 杂志文章
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更新日期:2019-09-19 00:00:00
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journal_title:Nucleic acids research
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更新日期:2003-05-01 00:00:00
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journal_title:Nucleic acids research
pub_type: 杂志文章
doi:10.1093/nar/25.4.719
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abstract::In eukaryotes, exposure to stress conditions causes a shift from cap-dependent to cap-independent translation. In trypanosomatids, environmental switches are the driving force of a developmental program of gene expression, but it is yet unclear how their translation machinery copes with their constantly changing envir...
journal_title:Nucleic acids research
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doi:10.1093/nar/gkr555
更新日期:2011-10-01 00:00:00
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journal_title:Nucleic acids research
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更新日期:1988-06-10 00:00:00
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journal_title:Nucleic acids research
pub_type: 杂志文章
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更新日期:1990-01-25 00:00:00
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更新日期:1981-12-11 00:00:00
abstract::The thyroid hormone receptor alpha (THRA or c-erbA-1) gene belongs to a family of genes which encode nuclear receptors for various hydrophobic ligands such as steroids, vitamin D, retinoic acid and thyroid hormones. These receptors are composed of several domains important for hormone-binding, DNA-binding, dimerizatio...
journal_title:Nucleic acids research
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journal_title:Nucleic acids research
pub_type: 杂志文章
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更新日期:2017-07-27 00:00:00
abstract::Plastid mRNA stability is tightly regulated by external signals such as light. We have investigated the biochemical mechanism responsible for the dark-induced decrease of relative half-lives for mRNAs encoding photosynthetic proteins. Protein fractions isolated from plastids of light-grown and dark-adapted plants corr...
journal_title:Nucleic acids research
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journal_title:Nucleic acids research
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更新日期:2019-09-26 00:00:00
abstract::Resonances of the water exchangeable iminoprotons of the acceptor and D stem of yeast tRNAPhe have been assigned by means of Nuclear Overhauser Effects (NOE's). Assignments were made for spectra recorded from tRNA dialysed against a buffer with 110 mM sodium and 5 mM magnesium ions and against a buffer with 430 mM sod...
journal_title:Nucleic acids research
pub_type: 杂志文章
doi:10.1093/nar/10.21.6981
更新日期:1982-11-11 00:00:00
abstract::7SK snRNA, an abundant RNA discovered in human nucleus, regulates transcription by RNA polymerase II (RNAPII). It sequesters and inhibits the transcription elongation factor P-TEFb which, by phosphorylation of RNAPII, switches transcription from initiation to processive elongation and relieves pauses of transcription....
journal_title:Nucleic acids research
pub_type: 杂志文章
doi:10.1093/nar/gkq660
更新日期:2010-11-01 00:00:00