Epidemiology of rotavirus electropherotypes determined by a simplified diagnostic technique with RNA analysis.

Abstract:

:The incidence and RNA electropherotypes of rotavirus in stools or rectal swabs of children with diarrhea were studied for three rotavirus seasons (1981 through 1984) in Philadelphia, Pa. We used a simplified RNA analysis method involving polyacrylamide gel electrophoresis followed by silver staining. Phosphate-buffered saline suspensions of the stools and swab eluates were examined directly by polyacrylamide gel electrophoresis-silver staining analysis and enzyme-linked immunoadsorbent assay (Rotazyme; Abbott Laboratories); electron microscopy was performed on solid stool specimens. The RNA analysis results were compared with electron microscopy and enzyme-linked immunosorbent assay results and exhibited a sensitivity and specificity greater than or equal to that of electron microscopy or the enzyme-linked immunosorbent assay. Ten different electropherotypes were detected among the 68 rotavirus RNA-positive specimens examined over the 3-year study. The predominant electropherotype was different in each season. Our results indicate that the polyacrylamide gel electrophoresis-silver nitrate strain RNA analysis of simple unextracted stool suspensions is a uniquely useful diagnostic technique; it rapidly provides both a definitive positive result and immediate determination of the RNA electropherotype, which is of value for epidemiological study.

journal_name

J Clin Microbiol

authors

Dolan KT,Twist EM,Horton-Slight P,Forrer C,Bell LM Jr,Plotkin SA,Clark HF

doi

10.1128/JCM.21.5.753-758.1985

subject

Has Abstract

pub_date

1985-05-01 00:00:00

pages

753-8

issue

5

eissn

0095-1137

issn

1098-660X

journal_volume

21

pub_type

杂志文章
  • Detecting bunyaviruses of the Bunyamwera and California serogroups by a PCR technique.

    abstract::Many bunyaviruses of the Bunyamwera and California serogroups are medically important human pathogens. The development of an effective technique to detect the viruses by using molecular biologic tools, such as PCR, improves not only clinical diagnosis but also virologic surveillance of mosquito vectors in the field. I...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.34.5.1184-1188.1996

    authors: Kuno G,Mitchell CJ,Chang GJ,Smith GC

    更新日期:1996-05-01 00:00:00

  • Dabigatran inhibits Staphylococcus aureus coagulase activity.

    abstract::The ability of Staphylococcus aureus to clot plasma through conformational activation of prothrombin by staphylocoagulase is used to distinguish S. aureus from coagulase-negative staphylococci. We show that while the direct thrombin inhibitor dabigatran inhibits staphylocoagulase activity, the clinical use of dabigatr...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.00896-10

    authors: Vanassche T,Verhaegen J,Peetermans WE,Hoylaerts MF,Verhamme P

    更新日期:2010-11-01 00:00:00

  • Mannheimia species associated with ovine mastitis.

    abstract::Mannheimia glucosida, M. haemolytica, and M. ruminalis were isolated from cases of acute mastitis in ewes. M. glucosida was found to be a common cause of clinical mastitis in sheep. Selected phenotypic tests in addition to genotyping were needed to definitively identify Mannheimia species causing ovine mastitis. ...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.01145-10

    authors: Omaleki L,Barber SR,Allen JL,Browning GF

    更新日期:2010-09-01 00:00:00

  • Enteric adenovirus infection among infants with diarrhea in rural Bangladesh.

    abstract::A total of 4,409 stool specimens from infants less than 5 years of age seeking treatment for diarrhea in Matlab, Bangladesh, were tested for the presence of adenoviruses by using an enzyme immunoassay (EIA). EIA-positive stool samples were serotyped with monoclonal antibodies specific for adenovirus type 40 (Ad40) and...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.31.3.484-489.1993

    authors: Jarecki-Khan K,Tzipori SR,Unicomb LE

    更新日期:1993-03-01 00:00:00

  • Preliminary evaluation of a rapid colorimetric method for identification of pathogenic Neisseria.

    abstract::A rapid colorimetric method for the identification of pathogenic Neisseria (Identicult-Neisseria; Scott Laboratories, Inc.) based on beta-galactosidase, gamma-glutamylaminopeptidase, and gamma-prolylaminopeptidase is described. All 82 clinical isolates of Neisseria gonorrhoeae, 9 clinical isolates of N. meningitidis, ...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.24.1.141-142.1986

    authors: Hosmer ME,Cohenford MA,Ellner PD

    更新日期:1986-07-01 00:00:00

  • Comparison of blood agar, ampicillin blood agar, MacConkey-ampicillin-Tween agar, and modified cefsulodin-Irgasan-novobiocin agar for isolation of Aeromonas spp. from stool specimens.

    abstract::The performance of four media for the isolation of Aeromonas strains from stool specimens, the importance of ampicillin-susceptible Aeromonas strains in the selection of culture media, and the usefulness of beta-hemolysis in screening blood-containing media for Aeromonas strains were evaluated in two phases. In the fi...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.26.9.1738-1740.1988

    authors: Kelly MT,Stroh EM,Jessop J

    更新日期:1988-09-01 00:00:00

  • Development of a rapid enzyme immunoassay for Clostridium difficile toxin A and its use in the diagnosis of C. difficile-associated disease.

    abstract::A rapid (2.5 h) direct enzyme immunoassay (EIA) for Clostridium difficile toxin A was developed for clinical use. Specimen centrifugation and filtration were not required. The EIA detected toxin A levels in patient stool as low as 20 pg (2 ng/ml of stool). The test was 5,000 times more sensitive for toxin A than it wa...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.29.12.2724-2730.1991

    authors: DiPersio JR,Varga FJ,Conwell DL,Kraft JA,Kozak KJ,Willis DH

    更新日期:1991-12-01 00:00:00

  • G8 rotavirus strains isolated in the Democratic Republic of Congo belong to the DS-1-like genogroup.

    abstract::Several G8P[6] and G8P[8] rotavirus strains were isolated from hospitalized patients in the Democratic Republic of Congo in 2003. To investigate their overall genomic relatedness and to determine to which genogroup they belonged, the complete genomes of strains DRC88 (G8P[8]) and DRC86 (G8P[6]) were determined. Genomi...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.44.5.1801-1809.2006

    authors: Matthijnssens J,Rahman M,Yang X,Delbeke T,Arijs I,Kabue JP,Muyembe JJ,Van Ranst M

    更新日期:2006-05-01 00:00:00

  • DNA probe array for the simultaneous identification of herpesviruses, enteroviruses, and flaviviruses.

    abstract::Viral infections of the central nervous system (CNS) are caused by a variety of viruses, namely, herpesviruses, enteroviruses, and flaviviruses. The similar clinical signs provoked by these viruses make the diagnosis difficult. We report on the simultaneous detection of these major CNS pathogens using amplification by...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.43.8.3779-3787.2005

    authors: Korimbocus J,Scaramozzino N,Lacroix B,Crance JM,Garin D,Vernet G

    更新日期:2005-08-01 00:00:00

  • Point-Counterpoint: Large Multiplex PCR Panels Should Be First-Line Tests for Detection of Respiratory and Intestinal Pathogens.

    abstract::The first FDA-approved multiplex PCR panel for a large number of respiratory pathogens was introduced in 2008. Since then, other PCR panels for detection of several respiratory and gastrointestinal pathogens have been approved by the FDA and are commercially available, and more such panels are likely to become availab...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.00382-15

    authors: Schreckenberger PC,McAdam AJ

    更新日期:2015-10-01 00:00:00

  • Interlaboratory comparison of the toluidine red unheated serum test antigen preparation.

    abstract::The toluidine red unheated serum test (TRUST) antigen, a macroscopic flocculation test antigen developed by Pettit et al. (J. Clin. Microbiol. 18:1141-1145, 1983) by modifying the color-coded antigen of Kasatiya and Lambert (Appl. Microbiol. 28:317-318, 1974), was compared with the Venereal Disease Research Laboratory...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.20.3.434-437.1984

    authors: Parham CE,Pettit DE,Larsen SA,Hambie EA,Perryman MW,McGrew BE

    更新日期:1984-09-01 00:00:00

  • Serological cross-reaction between Legionella spp. and Capnocytophaga ochracea by using latex agglutination test.

    abstract::Cross-reactivity between Legionella spp. and Capnocytophaga ochracea was noted by latex agglutination tests (Serobact Legionella; Disposable Products, Adelaide, Australia). Four of 11 (36%) C. ochracea isolates agglutinated with latex reagents designed to identify Legionella pneumophila serogroups. C. ochracea isolate...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.32.12.3054-3055.1994

    authors: Chen S,Hicks L,Yuen M,Mitchell D,Gilbert GL

    更新日期:1994-12-01 00:00:00

  • Predictive fluorescent amplified-fragment length polymorphism analysis of Escherichia coli: high-resolution typing method with phylogenetic significance.

    abstract::The fluorescent amplified-fragment length polymorphism (FAFLP) assay potentially amplifies a unique set of genome fragments from each bacterial clone. It uses stringently hybridizing primers which carry a fluorescent label. Precise fragment sizing is achieved by the inclusion of an internal size standard in every lane...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.37.5.1274-1279.1999

    authors: Arnold C,Metherell L,Willshaw G,Maggs A,Stanley J

    更新日期:1999-05-01 00:00:00

  • Rapid detection of Mycoplasma pneumoniae by an assay based on PCR and probe hybridization in a nonradioactive microwell plate format.

    abstract::A new molecular assay, based on a rapid DNA extraction protocol, PCR, and hybridization to a specific probe in a nonradioactive microwell plate format was used to detect Mycoplasma pneumoniae in bronchoalveolar fluid specimens. The sensitivity of the assay was determined to be 10 to 100 organisms with M. pneumoniae re...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.35.6.1592-1594.1997

    authors: Kessler HH,Dodge DE,Pierer K,Young KK,Liao Y,Santner BI,Eber E,Roeger MG,Stuenzner D,Sixl-Voigt B,Marth E

    更新日期:1997-06-01 00:00:00

  • Mycobacterial cross contamination during radiometric culturing.

    abstract::Pseudobacteremias in blood cultures performed on the BACTEC radiometric blood culture system have been reported. We report three cases of cross contamination with Mycobacterium avium that occurred when mycobacteria were cultured with the BACTEC 460 TB system. Malfunction of the needle sterilization heating block was d...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.26.9.1867-1868.1988

    authors: Vannier AM,Tarrand JJ,Murray PR

    更新日期:1988-09-01 00:00:00

  • Clinical evaluation of BioPlex 2200 HIV Ag-Ab, an automated screening method providing discrete detection of HIV-1 p24 antigen, HIV-1 antibody, and HIV-2 antibody.

    abstract::Early and accurate diagnosis is essential for optimal therapeutic outcomes in patients infected with HIV. Currently, none of the commercially available fourth-generation assays differentiate HIV-1 and HIV-2 antibodies (Ab) or the HIV-1 p24 antigen (Ag). The aim of this study was to evaluate the performance of a novel ...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.02460-13

    authors: Salmona M,Delarue S,Delaugerre C,Simon F,Maylin S

    更新日期:2014-01-01 00:00:00

  • Reduced virulence of Pseudomonas aeruginosa grown in the presence of benzalkonium chloride.

    abstract::Resistant cells of Pseudomonas aeruginosa ATCC 9027 which were grown in the presence of 1 mg of benzalkonium chloride (BC) per ml caused only a mild conjunctivitis when they were dropped onto the scratched corneas of rabbits. In contrast, cells of the BC-sensitive parent strain induced a severe keratoconjunctivitis. I...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.1.2.175-179.1975

    authors: Adair FW,Liauw HL,Geftic SG,Gelzer J

    更新日期:1975-02-01 00:00:00

  • Cokeromyces recurvatus isolated from pleural and peritoneal fluid: case report.

    abstract::The zygomycetous mold Cokeromyces recurvatus was isolated from the pleural and peritoneal fluids of a 64-year-old man with a history of peptic ulcer disease and alcohol abuse. The patient presented to the hospital with severe abdominal pain and a ruptured duodenal ulcer. This is one of the few times that C.recurvatus ...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.34.10.2601-2603.1996

    authors: Munipalli B,Rinaldi MG,Greenberg SB

    更新日期:1996-10-01 00:00:00

  • Specific, sensitive, and rapid assay for human immunodeficiency virus type 1 pol mutations associated with resistance to zidovudine and didanosine.

    abstract::The effectiveness of antiretroviral therapy may be limited by the development of human immunodeficiency virus type 1 (HIV-1) resistance. Monitoring for resistance will perhaps allow changes in therapy prior to deterioration in the patient's clinical or immunologic status. Our objective was to develop a rapid, specific...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.33.2.342-347.1995

    authors: Frenkel LM,Wagner LE 2nd,Atwood SM,Cummins TJ,Dewhurst S

    更新日期:1995-02-01 00:00:00

  • Family outbreak of yersiniosis.

    abstract::Yersinia enterocolitica biotype 1, serotype O:21 was isolated from feces or rectal washings of three members of one family in northwestern Saskatchewan. The three isolates gave positive pathogenicity tests in guinea pigs with cultures grown at 22 degrees C as inoculum. All three cases showed clinical symptoms consiste...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.16.4.622-626.1982

    authors: Martin T,Kasian GF,Stead S

    更新日期:1982-10-01 00:00:00

  • Direct identification of bacterial isolates in blood cultures by using a DNA probe.

    abstract::This study involved the rapid, direct identification of Staphylococcus aureus, Streptococcus pneumoniae, Escherichia coli, Haemophilus influenzae, Enterococcus sp., and Streptococcus agalactiae from positive blood culture bottles (BACTEC, Johnston Laboratories, Inc.) by using the AccuProbe (Gen-Probe, San Diego, Calif...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.29.10.2193-2196.1991

    authors: Davis TE,Fuller DD

    更新日期:1991-10-01 00:00:00

  • Enzyme-linked immunosorbent assay for detection of measles antibody.

    abstract::An enzyme-linked immunosorbent assay (ELISA) was developed for the detection of measles immunoglobulin G antibody (MEASELISA). This assay was found to be comparable to the measles hemagglutination inhibition (HAI) test. Approximately 500 sera from three centers were tested by MEASELISA and the HAI test. MEASELISA demo...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.17.5.814-818.1983

    authors: Boteler WL,Luipersbeck PM,Fuccillo DA,O'Beirne AJ

    更新日期:1983-05-01 00:00:00

  • Detection of genomic heterogeneity in Streptococcus suis isolates by DNA restriction fragment length polymorphisms of rRNA genes (ribotyping).

    abstract::Whole-cell chromosomal digests of 54 isolates of Streptococcus suis encompassing all known serotypes from a geographically varied collection were examined by PstI restriction fragment length polymorphisms and then hybridized with a digoxigenin-11-dUTP-labeled cDNA probe transcribed from a mixture of 16S and 23S rRNAs ...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.33.4.968-972.1995

    authors: Okwumabua O,Staats J,Chengappa MM

    更新日期:1995-04-01 00:00:00

  • Rapid molecular detection of extrapulmonary tuberculosis by the automated GeneXpert MTB/RIF system.

    abstract::In total, 521 nonrespiratory specimens (91 urine, 30 gastric aspirate, 245 tissue, 113 pleural fluid, 19 cerebrospinal fluid [CSF], and 23 stool specimens) submitted to the German National Reference Laboratory for Mycobacteria (NRL) from May 2009 to August 2010 were comparatively investigated with the new molecular-ba...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.02268-10

    authors: Hillemann D,Rüsch-Gerdes S,Boehme C,Richter E

    更新日期:2011-04-01 00:00:00

  • Comparison of human immunodeficiency virus type 1 RNA sequence heterogeneity in cerebrospinal fluid and plasma.

    abstract::The source of human immunodeficiency virus type 1 (HIV-1) RNA in cerebrospinal fluid (CSF) during HIV-1 infection is uncertain. The sequence heterogeneity of HIV-1 RNA in simultaneous CSF and plasma samples was characterized for five patients at the baseline and during the first week of antiretroviral therapy by two c...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.38.12.4637-4639.2000

    authors: Tang YW,Huong JT,Lloyd RM Jr,Spearman P,Haas DW

    更新日期:2000-12-01 00:00:00

  • Rapid identification of Burkholderia pseudomallei in blood cultures by a monoclonal antibody assay.

    abstract::Burkholderia pseudomallei is the causative agent of melioidosis. In northeast Thailand, this gram-negative bacterium is a major cause of mortality from septicemia. The definitive diagnosis of this disease is made by bacterial culture. In this study, we produced a monoclonal antibody (MAb) specific to the 30-kDa protei...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.37.11.3662-3667.1999

    authors: Pongsunk S,Thirawattanasuk N,Piyasangthong N,Ekpo P

    更新日期:1999-11-01 00:00:00

  • Identification, characterization, and distribution of a Shiga toxin 1 gene variant (stx(1c)) in Escherichia coli strains isolated from humans.

    abstract::By using sequence analysis of Shiga toxin 1 (Stx 1) genes from human and ovine Stx-producing Escherichia coli (STEC) strains, we identified an Stx1 variant in STEC of human origin that was identical to the Stx1 variant from ovine STEC, but demonstrated only 97.1 and 96.6% amino acid sequence identity in its A and B su...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/jcm.40.4.1441-1446.2002

    authors: Zhang W,Bielaszewska M,Kuczius T,Karch H

    更新日期:2002-04-01 00:00:00

  • Identification of nocardiae and streptomycetes of medical importance.

    abstract::During a taxonomic investigation of Nocardia spp. and Streptomyces spp., we received 658 isolates from laboratories of both human and veterinary medicine. Our procedure leading to the identification of 92% of these isolates, the species that they represented, and a characteristic pattern of properties of the strains o...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.11.6.728-736.1980

    authors: Mishra SK,Gordon RE,Barnett DA

    更新日期:1980-06-01 00:00:00

  • Isolation of Yersinia enterocolitica from swine.

    abstract::Data pertaining to 20 strains of Yensinia enterocolitica isolated from the cecal content of swine slaughtered at Toronto Abattoirs are presented. Fifteen of 20 cultures belonged to the two predominant human serotypes in Ontario (i.e., serotype O:3 and O:5,27.) Seven cultures of Y. enterocolitica O:3 belonged to the "C...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:

    authors: Toma S,Deidrick VR

    更新日期:1975-12-01 00:00:00

  • Identification of dermatophytes by an oligonucleotide array.

    abstract::Species of dermatophytes are classified into three anamorphic (asexual) genera, Epidermophyton, Microsporum, and Trichophyton. Conventional methods used to identify dermatophytes are often lengthy and may be inconclusive because of atypical microscopic or colony morphology. Based on the internal transcribed spacer 1 (...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.00829-07

    authors: Li HC,Bouchara JP,Hsu MM,Barton R,Chang TC

    更新日期:2007-10-01 00:00:00