Abstract:
:In genome editing with CRISPR-Cas9, transgene integration often remains challenging. Here, we present an approach for increasing the efficiency of transgene integration by homology-dependent repair (HDR). CtIP, a key protein in early steps of homologous recombination, is fused to Cas9 and stimulates transgene integration by HDR at the human AAVS1 safe harbor locus. A minimal N-terminal fragment of CtIP, designated HE for HDR enhancer, is sufficient to stimulate HDR and this depends on CDK phosphorylation sites and the multimerization domain essential for CtIP activity in homologous recombination. HDR stimulation by Cas9-HE, however, depends on the guide RNA used, a limitation that may be overcome by testing multiple guides to the locus of interest. The Cas9-HE fusion is simple to use and allows obtaining twofold or more efficient transgene integration than that with Cas9 in several experimental systems, including human cell lines, iPS cells, and rat zygotes.
journal_name
Nat Communjournal_title
Nature communicationsauthors
Charpentier M,Khedher AHY,Menoret S,Brion A,Lamribet K,Dardillac E,Boix C,Perrouault L,Tesson L,Geny S,De Cian A,Itier JM,Anegon I,Lopez B,Giovannangeli C,Concordet JPdoi
10.1038/s41467-018-03475-7subject
Has Abstractpub_date
2018-03-19 00:00:00pages
1133issue
1issn
2041-1723pii
10.1038/s41467-018-03475-7journal_volume
9pub_type
杂志文章abstract::Cotton is an important natural fiber crop, however, its comprehensive and high-resolution gene map is lacking. Here we integrate four complementary high-throughput techniques, including Pacbio long read Iso-seq, strand-specific RNA-seq, CAGE-seq, and PolyA-seq, to systematically explore the transcription landscape acr...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/s41467-019-12575-x
更新日期:2019-10-17 00:00:00
abstract::Although brain functionality is often remarkably robust to lesions and other insults, it may be fragile when these take place in specific locations. Previous attempts to quantify robustness and fragility sought to understand how the functional connectivity of brain networks is affected by structural changes, using eit...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/s41467-019-12915-x
更新日期:2019-10-30 00:00:00
abstract::Mucosal-associated invariant T (MAIT) cells are thought to detect microbial antigens presented by the HLA-Ib molecule MR1 through the exclusive use of a TRAV1-2-containing TCRα. Here we use MR1 tetramer staining and ex vivo analysis with mycobacteria-infected MR1-deficient cells to demonstrate the presence of function...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/ncomms12506
更新日期:2016-08-16 00:00:00
abstract::The NASA MErcury Surface, Space ENvironment, GEochemistry and Ranging (MESSENGER) spacecraft entered orbital phase around Mercury on 18 March 2011. A surprising consistent feature in the data returned is large-scale vortices that form exclusively on the dusk side of the magnetosphere. Here we present global kinetic hy...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/ncomms2676
更新日期:2013-01-01 00:00:00
abstract::MicroRNAs (miRNAs) are endogenous small RNAs of ∼21 nt that regulate multiple biological pathways in multicellular organisms. They derive from longer transcripts that harbor an imperfect stem-loop structure. In plants, the ribonuclease type III DICER-LIKE1 assisted by accessory proteins cleaves the precursor to releas...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/s41467-020-19129-6
更新日期:2020-10-21 00:00:00
abstract::1T-MoS2 and single-atom modified analogues represent a highly promising class of low-cost catalysts for hydrogen evolution reaction (HER). However, the role of single atoms, either as active species or promoters, remains vague despite its essentiality toward more efficient HER. In this work, we report the unambiguous ...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/s41467-020-17904-z
更新日期:2020-08-17 00:00:00
abstract::Epigenomic data sets provide critical information about the dynamic role of chromatin states in gene regulation, but a key question of how chromatin state segmentations vary under different conditions across the genome has remained unaddressed. Here we present ChromDiff, a group-wise chromatin state comparison method ...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/ncomms8973
更新日期:2015-08-18 00:00:00
abstract::Transthyretin (TTR) is a plasma homotetrameric protein implicated in fatal systemic amyloidoses. TTR tetramer dissociation precedes pathological TTR aggregation. Native state stabilizers are promising drugs to treat TTR amyloidoses. Here we repurpose tolcapone, an FDA-approved molecule for Parkinson's disease, as a po...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/ncomms10787
更新日期:2016-02-23 00:00:00
abstract::Recently, surface-enhanced Raman scattering nanoprobes have shown tremendous potential in oncological imaging owing to the high sensitivity and specificity of their fingerprint-like spectra. As current Raman scanners rely on a slow, point-by-point spectrum acquisition, there is an unmet need for faster imaging to cove...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/s41467-019-09173-2
更新日期:2019-04-26 00:00:00
abstract::As in human speech acquisition, songbird vocal learning depends on early auditory experience. During development, juvenile songbirds listen to and form auditory memories of adult tutor songs, which they use to shape their own vocalizations in later sensorimotor learning. The higher-level auditory cortex, called the ca...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/ncomms11946
更新日期:2016-06-21 00:00:00
abstract::Ensuring that one gene's transcription does not inappropriately affect the expression of its neighbors is a fundamental challenge to gene regulation in a genomic context. In plants, which lack homologs of animal insulator proteins, the mechanisms that prevent transcriptional interference are not well understood. Here ...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/s41467-019-12328-w
更新日期:2019-09-25 00:00:00
abstract::Polarization-driven resistive switching in ferroelectric tunnel junctions (FTJs)--structures composed of two electrodes separated by an ultrathin ferroelectric barrier--offers new physics and materials functionalities, as well as exciting opportunities for the next generation of non-volatile memories and logic devices...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/ncomms6518
更新日期:2014-11-24 00:00:00
abstract::In all known examples of metal-ligand (M-L) δ and φ bonds, the metal orbitals are aligned to the ligand orbitals in a "head-to-head" or "side-to-head" fashion. Here, we report two fundamentally new types of M-L δ and φ interactions; "head-to-side" δ and "side-to-side" φ back-bonding, found in complexes of metallacyclo...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/s41467-020-15197-w
更新日期:2020-03-25 00:00:00
abstract::The Tie receptors with their Angiopoietin ligands act as regulators of angiogenesis and vessel maturation. Tie2 exerts its functions through its supposed endothelial-specific expression. Yet, Tie2 is also expressed at lower levels by pericytes and it has not been unravelled through which mechanisms pericyte Angiopoiet...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/ncomms16106
更新日期:2017-07-18 00:00:00
abstract::The quantum spin Hall (QSH) phase is an exotic phenomena in condensed-matter physics. Here we show that a minimal basis of three orbitals (s, px, py) is required to produce a QSH phase via nearest-neighbour hopping in a two-dimensional trigonal lattice. Tight-binding model analyses and calculations show that the QSH p...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/ncomms12746
更新日期:2016-09-07 00:00:00
abstract::Mutations in the gene coding for membrane-bound fatty aldehyde dehydrogenase (FALDH) lead to toxic accumulation of lipid species and development of the Sjögren-Larsson Syndrome (SLS), a rare disorder characterized by skin defects and mental retardation. Here, we present the crystallographic structure of human FALDH, t...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/ncomms5439
更新日期:2014-07-22 00:00:00
abstract::In response to brain injury, microglia rapidly extend processes that isolate lesion sites and protect the brain from further injury. Here we report that microglia carrying a pathogenic mutation in the Parkinson's disease (PD)-associated gene, G2019S-LRRK2 (GS-Tg microglia), show retarded ADP-induced motility and delay...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/ncomms9255
更新日期:2015-09-14 00:00:00
abstract::Activation of the NLRP3 inflammasome and subsequent maturation of IL-1β have been implicated in acute lung injury (ALI), resulting in inflammation and fibrosis. We investigated the role of vimentin, a type III intermediate filament, in this process using three well-characterized murine models of ALI known to require N...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/ncomms7574
更新日期:2015-03-12 00:00:00
abstract::It is a relatively new insight of classical statistics that empirical data can contain information about causation rather than mere correlation. First algorithms have been proposed that are capable of testing whether a presumed causal relationship is compatible with an observed distribution. However, no systematic met...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/ncomms6766
更新日期:2015-01-06 00:00:00
abstract::Polyps of the cnidarian Hydra maintain their adult anatomy through two developmental organizers, the head organizer located apically and the foot organizer basally. The head organizer is made of two antagonistic cross-reacting components, an activator, driving apical differentiation and an inhibitor, preventing ectopi...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/s41467-018-08242-2
更新日期:2019-01-18 00:00:00
abstract::Thin films comprising semiconductor nanocrystals are emerging for applications in electronic and optoelectronic devices including light emitting diodes and solar cells. Achieving high charge carrier mobility in these films requires the identification and elimination of electronic traps on the nanocrystal surfaces. Her...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/ncomms6822
更新日期:2014-12-19 00:00:00
abstract::An amendment to this paper has been published and can be accessed via a link at the top of the paper. ...
journal_title:Nature communications
pub_type: 已发布勘误
doi:10.1038/s41467-019-11219-4
更新日期:2019-07-10 00:00:00
abstract::Biological clocks have evolved as an adaptation to life on a rhythmic planet, synchronising physiological processes to the environmental light-dark cycle. Here we examine circadian clock function in Mexican blind cavefish Astyanax mexicanus and its surface counterpart. In the lab, adult surface fish show robust circad...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/ncomms3769
更新日期:2013-01-01 00:00:00
abstract::The laboratory mouse serves as an important model system for studying gene, brain and behavioural interactions. Powerful methods of gene targeting have helped to decipher gene-function associations in human diseases. Yet, the laboratory mouse, obtained after decades of human-driven artificial selection, inbreeding, an...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/ncomms5569
更新日期:2014-08-05 00:00:00
abstract::Transgenerational epigenetic inheritance refers to the transmission of epigenetic information through the germline. While it has been observed in plants, nematodes and fruit flies, its occurrence in mammals-and humans in particular-is the matter of controversial debate, mostly because the study of transgenerational ep...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/s41467-018-05445-5
更新日期:2018-07-30 00:00:00
abstract::In vitro fabrication of functional vascularized three-dimensional tissues has been a long-standing objective in the field of tissue engineering. Here we report a technique to engineer cardiac tissues with perfusable blood vessels in vitro. Using resected tissue with a connectable artery and vein as a vascular bed, we ...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/ncomms2406
更新日期:2013-01-01 00:00:00
abstract::Gene regulation and metabolism are two fundamental processes that coordinate the self-renewal and differentiation of neural precursor cells (NPCs) in the developing mammalian brain. However, little is known about how metabolic signals instruct gene expression to control NPC homeostasis. Here, we show that methylglyoxa...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/s41467-020-15941-2
更新日期:2020-04-24 00:00:00
abstract::Adult neural stem cells reside in a specialized niche in the subventricular zone (SVZ). Throughout life they give rise to adult-born neurons in the olfactory bulb (OB), thus contributing to neural plasticity and pattern discrimination. Here, we show that the neurovascular protein EGFL7 is secreted by endothelial cells...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/ncomms15922
更新日期:2017-06-28 00:00:00
abstract::The development of transistors with high gain is essential for applications ranging from switching elements and drivers to transducers for chemical and biological sensing. Organic transistors have become well-established based on their distinct advantages, including ease of fabrication, synthetic freedom for chemical ...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/ncomms3133
更新日期:2013-01-01 00:00:00
abstract::The Clp protease complex degrades a multitude of substrates, which are engaged by a AAA+ chaperone such as ClpX and subsequently digested by the dynamic, barrel-shaped ClpP protease. Acyldepsipeptides (ADEPs) are natural product-derived antibiotics that activate ClpP for chaperone-independent protein digestion. Here w...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/ncomms7320
更新日期:2015-02-19 00:00:00