Sensitive mutant detection by concentrating mutant DNA with allele-specific capture and its application to analysis of contaminated grains in rice.

Abstract:

KEY MESSAGE:We developed a method for detection of mutants in a large number of plants, and found this method to be applicable to detection of a mutant allele at a concentration of 1/1000. Many techniques for SNP analysis have been developed, but most of these techniques are not so sensitive to be used for detection of mutants in a large number of plants. Although some highly sensitive methods of SNP analysis have been reported, they are costly. In the present study, a method for concentrating mutant DNA was examined for sensitive detection of an SNP allele in a bulked DNA sample. PCR products of mutant alleles were captured by biotin-labeled oligonucleotide conjugated with streptavidin-coated magnetic beads. By repeated captures of each strand and combining both strands, mutant alleles with a concentration of 1/1000 in wild-type alleles were detectable by CAPS or dCAPS analysis. Indirect capture of a mutant allele was possible, but efficiency was slightly lower than that of the direct capture. The developed method was applied to detection of contamination of rice grains by grains of a different cultivar. Possible applications of this method are discussed.

journal_name

Plant Cell Rep

journal_title

Plant cell reports

authors

Kohata R,Koitabashi K,Kitashiba H,Nishio T

doi

10.1007/s00299-018-2274-9

subject

Has Abstract

pub_date

2018-06-01 00:00:00

pages

865-872

issue

6

eissn

0721-7714

issn

1432-203X

pii

10.1007/s00299-018-2274-9

journal_volume

37

pub_type

杂志文章
  • Introduction of a chimeric gene encoding an oryzacystatin-β-glucuronidase fusion protein into rice protoplasts and regeneration of transformed plants.

    abstract::In order to construct transgenic rice plant with an introduced oryzacystatin (OC)-β-glucuronidase (GUS) fusion gene, we first introduced it into rice protoplasts by electroporation, together with a marker gene conferring hygromycinresistance (pUC-HPH). In a transient assay using the transfected protoplasts, both OC an...

    journal_title:Plant cell reports

    pub_type: 杂志文章

    doi:10.1007/BF00193714

    authors: Hosoyama H,Irie K,Abe K,Arai S

    更新日期:1995-12-01 00:00:00

  • Shoot apex explants for induction of somatic embryogenesis in mature Quercus robur L. trees.

    abstract::A procedure for inducing somatic embryos in shoot apex explants (2 mm) excised from shoot proliferation cultures established from adult oak trees (Quercus robur) was investigated. Embryogenesis was induced in shoot tip as well as leaf explants in three out of the five genotypes evaluated. Somatic embryos were formed b...

    journal_title:Plant cell reports

    pub_type: 杂志文章

    doi:10.1007/s00299-010-0852-6

    authors: San-José MC,Corredoira E,Martínez MT,Vidal N,Valladares S,Mallón R,Vieitez AM

    更新日期:2010-06-01 00:00:00

  • A novel strategy for the induction and maintenance of shoot regeneration from callus derived from established shoots of apple [Malus×Domestica Borkh.] cv. Golden Delicious.

    abstract::A novel strategy for the production and maintenance of morphogenic callus for 1 year from mature leaf explants of apple has been developed using micropropagated primary leaves of cv. Golden Delicious. The technique required second generation adventitious buds produced from cultured primary leaves also produced from es...

    journal_title:Plant cell reports

    pub_type: 杂志文章

    doi:10.1007/s002990050446

    authors: Rugini E,Muganu M

    更新日期:1998-04-01 00:00:00

  • Improving the efficiency of isolated microspore culture in six-row spring barley: I-optimization of key physical factors.

    abstract::An improved isolated microspore culture protocol alleviating the recalcitrance typically observed in six-row spring barley was developed by optimizing four key physical factors to increase embryogenesis and reduce albinism. Doubled haploid (DH) plants are completely homozygous individuals that can be generated in just...

    journal_title:Plant cell reports

    pub_type: 杂志文章

    doi:10.1007/s00299-014-1583-x

    authors: Esteves P,Belzile F

    更新日期:2014-06-01 00:00:00

  • T-DNA length variability in mannopine hairy root: more than 50 kilobasepairs of pRi T-DNA can integrate in plant cells.

    abstract::Independent carrot (Daucus carota) hairy root lines were established by inoculation of discs taken from the same carrot with Agrobacterium rhizogenes 8196 and A. tumefaciens C58C1(pRi8196) carrying pRi8196. Several lines were compared with respect to T-DNA length. One of them was found to have integrated sequences cov...

    journal_title:Plant cell reports

    pub_type: 杂志文章

    doi:10.1007/BF00270112

    authors: David C,Petit A,Tempé J

    更新日期:1988-03-01 00:00:00

  • Interspecific hybridization of Phaseolus vulgaris L. and Phaseolus angustissimus A. Gray using in vitro embryo culture.

    abstract::The introgression of new desirable characters is very necessary in common bean (Phaseolus vulgaris L.)Interspecific hybridization of P. vulgaris L. with P. angustissimus A. Gray, a wild species with narrow leaves, could be successfully achieved for the first time using embryo culture. Sixteen to twenty-three-day old e...

    journal_title:Plant cell reports

    pub_type: 杂志文章

    doi:10.1007/BF00268593

    authors: Belivanis T,Doré C

    更新日期:1986-10-01 00:00:00

  • Molecular cloning and characterization of the light-regulation and circadian-rhythm of the VDE gene promoter from Zingiber officinale.

    abstract::Ginger (Zingiber officinale Rosc.) is prone to photoinhibition under intense sunlight. Excessive light can be dissipated by the xanthophyll cycle, where violaxanthin de-epoxidase (VDE) plays a critical role in protecting the photosynthesis apparatus from the damage of excessive light. We isolated ~2.0 kb of ginger VDE...

    journal_title:Plant cell reports

    pub_type: 杂志文章

    doi:10.1007/s00299-012-1254-8

    authors: Zhao W,Wang S,Li X,Huang H,Sui X,Zhang Z

    更新日期:2012-08-01 00:00:00

  • Desiccation of microspore derived embryos of oilseed rape (Brassica napus L.).

    abstract::Microspore-derived embryos from Brassica napus L. were dried to less than 15% moisture and stored dry for a minimum of 7 days. Successful plant regeneration was observed when embryos at the cotyledonary stage of development were treated with 50 uM ABA for 7 days prior to desiccation. Solid agar or liquid medium gave s...

    journal_title:Plant cell reports

    pub_type: 杂志文章

    doi:10.1007/BF00193155

    authors: Senaratna T,Kott L,Beversdorf WD,McKersie BD

    更新日期:1991-09-01 00:00:00

  • Production of flavanone-neohesperidosides in Citrus embryos.

    abstract::Grapefruit (Citrus paradisi) tissue cultures were examined for qualitative and quantitative changes in flavanone-neohesperidoside content during somatic embryogenesis. Embryos cultured in vitro contain naringin and a rhamnosyl-transferase activity which is capable of rhamnosylating position 2 on the flavanone glucosid...

    journal_title:Plant cell reports

    pub_type: 杂志文章

    doi:10.1007/BF00270076

    authors: Gavish H,Lewinsohn E,Vardi A,Fluhr R

    更新日期:1989-10-01 00:00:00

  • Medium salt strength induced changes in growth, physiology and secondary metabolite content in adventitious roots of Morinda citrifolia: the role of antioxidant enzymes and phenylalanine ammonia lyase.

    abstract::In an attempt to improve growth and secondary metabolite production, and to understand the possible mechanism involved in relation to the changes in physiology and activities of antioxidant enzymes, we cultured Morinda citrifolia adventitious roots in different strength (0.25, 0.50, 0.75, 1.0, 1.5 and 2.0) of Murashig...

    journal_title:Plant cell reports

    pub_type: 杂志文章

    doi:10.1007/s00299-010-0854-4

    authors: Abdullahil Baque M,Lee EJ,Paek KY

    更新日期:2010-07-01 00:00:00

  • Ultrastructural changes associated with cryopreservation of banana ( Musa spp.) highly proliferating meristems.

    abstract::Cryopreservation has been shown to improve the frequency of virus elimination - specifically cucumber mosaic virus and banana streak virus - from banana ( Musa spp.) plants. To understand the mode of action of cryopreservation for the eradication of viral particles, we examined the ultrastructure of meristem tips at e...

    journal_title:Plant cell reports

    pub_type: 杂志文章

    doi:10.1007/s00299-002-0537-x

    authors: Helliot B,Swennen R,Poumay Y,Frison E,Lepoivre P,Panis B

    更新日期:2003-03-01 00:00:00

  • Expression of a salt-induced protein (SALT) in suspension-cultured cells and leaves of rice following exposure to fungal elicitor and phytohormones.

    abstract::Phytohormones are essential signal compounds in the regulation of stress-related and defense-related genes. However, there is no clear evidence for any effect of these signal molecules and biotic elicitors on the regulation of the SALT gene in suspension-cultured rice cells. We characterized the expression of a SALT g...

    journal_title:Plant cell reports

    pub_type: 杂志文章

    doi:10.1007/s00299-004-0836-5

    authors: Kim ST,Kim SG,Hwang DH,Kang SY,Koo SC,Cho MJ,Kang KY

    更新日期:2004-10-01 00:00:00

  • The salicylic acid-induced protection of non-climacteric unripe pepper fruit against Colletotrichum gloeosporioides is similar to the resistance of ripe fruit.

    abstract::The anthracnose fungus Colletotrichum gloeosporioides deleteriously affects unripe pepper fruit, but not ripe fruit. Here, we show that the induction of local acquired resistance (LAR) by salicylic acid (SA), 2,6-dichloroisonicotinic acid, or benzo-(1,2,3)-thiadiazole-7-carbothioic acid S-methyl ester pretreatment pro...

    journal_title:Plant cell reports

    pub_type: 杂志文章

    doi:10.1007/s00299-009-0756-5

    authors: Lee S,Hong JC,Jeon WB,Chung YS,Sung S,Choi D,Joung YH,Oh BJ

    更新日期:2009-10-01 00:00:00

  • Plant lipid environment and membrane enzymes: the case of the plasma membrane H+-ATPase.

    abstract::Several lipid classes constitute the universal matrix of the biological membranes. With their amphipathic nature, lipids not only build the continuous barrier that confers identity to every cell and organelle, but they are also active actors that modulate the activity of the proteins immersed in the lipid bilayer. The...

    journal_title:Plant cell reports

    pub_type: 杂志文章,评审

    doi:10.1007/s00299-014-1735-z

    authors: Morales-Cedillo F,González-Solís A,Gutiérrez-Angoa L,Cano-Ramírez DL,Gavilanes-Ruiz M

    更新日期:2015-04-01 00:00:00

  • Asymmetric somatic hybridization between UV-irradiated Citrus unshiu and C. sinensis: regeneration and characterization of hybrid shoots.

    abstract::In the present paper, attempts were made to explore the possibility of employing ultraviolet (UV) irradiation in citrus asymmetric fusion for transfer of limited amount of favorable traits from a desirable cultivar to a target one. Exposure of Satsuma mandarin (Citrus unshiu Marc.) embryogenic protoplasts to UV at an ...

    journal_title:Plant cell reports

    pub_type: 杂志文章

    doi:10.1007/s00299-007-0350-7

    authors: Xu XY,Hu ZY,Li JF,Liu JH,Deng XX

    更新日期:2007-08-01 00:00:00

  • Alfalfa MsCBL4 enhances calcium metabolism but not sodium transport in transgenic tobacco under salt and saline-alkali stress.

    abstract:KEY MESSAGE:MsCBL4 expression in tobacco enhanced its salt and saline-alkali stress tolerance by regulating calcium accumulation in roots, indicating the important role of calcium metabolism in plant saline-alkali stress tolerance The calcineurin B-like (CBL) family of proteins play important roles in plant abiotic str...

    journal_title:Plant cell reports

    pub_type: 杂志文章

    doi:10.1007/s00299-020-02543-x

    authors: An Y,Yang XX,Zhang L,Zhang J,Du B,Yao L,Li XT,Guo C

    更新日期:2020-08-01 00:00:00

  • Sunflower germin-like protein HaGLP1 promotes ROS accumulation and enhances protection against fungal pathogens in transgenic Arabidopsis thaliana.

    abstract:KEY MESSAGE:The novel sunflower gene HaGLP1 is the first germin-like protein characterized from the family Asteraceae. It alters the host redox status and confers protection against Sclerotinia sclerotiorum and Rhizoctonia solani. Germin-like proteins (GLPs) are a large, diverse and ubiquitous family of plant glycoprot...

    journal_title:Plant cell reports

    pub_type: 杂志文章

    doi:10.1007/s00299-015-1819-4

    authors: Beracochea VC,Almasia NI,Peluffo L,Nahirñak V,Hopp EH,Paniego N,Heinz RA,Vazquez-Rovere C,Lia VV

    更新日期:2015-10-01 00:00:00

  • Genetic transformation of lime (Citrus aurantifolia Swing.): factors affecting transformation and regeneration.

    abstract::We have previously developed procedures for the efficient production of sweet orange (Citrus sinensis L. Osbeck) and Carrizo citrange (C. sinensis L. Osbeck×Poncirus trifoliata L. Raf.) transgenic plants using an Agrobacterium tumefaciens-mediated transformation and shoot tip grafting in vitro regeneration system. We ...

    journal_title:Plant cell reports

    pub_type: 杂志文章

    doi:10.1007/s002990050311

    authors: Peña L,Cervera M,Juárez J,Navarro A,Pina JA,Navarro L

    更新日期:1997-09-01 00:00:00

  • Transformation of arctic bramble (Rubus arcticus L.) by Agrobacterium tumefaciens.

    abstract::Genetic transformation of arctic bramble (Rubus arcticus L.) was achieved utilizing a Ti-plasmid vector system of Agrobacterium tumefaciens. Internodal stem segments were inoculated with Agrobacterium strain EHA101 carrying a T-DNA with the CaMV 35 S promoter-gus-int marker gene from which β-glucuronidase (GUS) is exp...

    journal_title:Plant cell reports

    pub_type: 杂志文章

    doi:10.1007/s002990050491

    authors: Kokko HI,Kärenlampi SO

    更新日期:1998-07-01 00:00:00

  • Arabinogalactan-protein epitope Gal4 is differentially regulated and localized in cell lines of hybrid fir (Abies alba x Abies cephalonica) with different embryogenic and regeneration potential.

    abstract::Arabinogalactan proteins (AGPs) are important proteoglycans regulating somatic embryogenesis in diverse plant species. Embryogenic cells of somatic embryos are covered by special extracellular cell wall layer called extracellular surface matrix network (ECMSN) at their early developmental stages. Here we show that hig...

    journal_title:Plant cell reports

    pub_type: 杂志文章

    doi:10.1007/s00299-007-0429-1

    authors: Samaj J,Salaj T,Matúsová R,Salaj J,Takác T,Samajová O,Volkmann D

    更新日期:2008-02-01 00:00:00

  • Isolation, purification and some properties of a lectin from the winged bean (Psophocarpus tetragonolobus).

    abstract::We have isolated by affinity chromatography a lectin from the seeds of the winged bean (Psophocrapus tetragonolobus) which agglutinated human (group A, B and O), sheep and rabbit, but not mouse erythrocytes. A molecular weight of 41,000 was obtained from gel filtration, and on sodium dodecyl sulphate polyacrylamide ge...

    journal_title:Plant cell reports

    pub_type: 杂志文章

    doi:10.1007/BF00269646

    authors: Vijayakumar T,Forrester JA

    更新日期:1986-12-01 00:00:00

  • The promoter of the AlSAP gene from the halophyte grass Aeluropus littoralis directs a stress-inducible expression pattern in transgenic rice plants.

    abstract:KEY MESSAGE:When fused to " Pr AlSAP " promoter, transcripts of gusA exhibited similar accumulation patterns in transgenic rice as AlSAP transcripts in A. littoralis. Pr AlSAP can be used for engineering abiotic stress tolerance. We previously showed that ectopic expression of a stress-associated protein gene from Aelu...

    journal_title:Plant cell reports

    pub_type: 杂志文章

    doi:10.1007/s00299-015-1825-6

    authors: Ben-Saad R,Meynard D,Ben-Romdhane W,Mieulet D,Verdeil JL,Al-Doss A,Guiderdoni E,Hassairi A

    更新日期:2015-10-01 00:00:00

  • Cloning and functional expression of the gene encoding an inhibitor against Aspergillus flavus alpha-amylase, a novel seed lectin from Lablab purpureus (Dolichos lablab).

    abstract::Maize is one of the more important agricultural crops in the world and, under certain conditions, prone to attack from pathogenic fungi. One of these, Aspergillus flavus, produces toxic and carcinogenic metabolites, called aflatoxins, as byproducts of its infection of maize kernels. The alpha-amylase of A. flavus is k...

    journal_title:Plant cell reports

    pub_type: 杂志文章

    doi:10.1007/s00299-006-0250-2

    authors: Kim YH,Woloshuk CP,Cho EH,Bae JM,Song YS,Huh GH

    更新日期:2007-04-01 00:00:00

  • Sugarcane protoplasts: factors affecting division and plant regeneration.

    abstract::Sugarcane cell suspensions were initiated from leaf callus and sub-cultured every 7 to 10 days by alternate transfer to MS based medium with 3.0 and 1.0 mg 1(-1)2,4-D. Suspensions older than 3 months gave the most reproducible yields of protoplasts. Isolated protoplasts required 50 mM Ca(2+) in the washing solution an...

    journal_title:Plant cell reports

    pub_type: 杂志文章

    doi:10.1007/BF00269934

    authors: Chen WH,Davey MR,Power JB,Cocking EC

    更新日期:1988-08-01 00:00:00

  • In vitro plant regeneration of leguminous trees (Albizia spp).

    abstract::Hypocotyl explants of three leguminous forest tree species, Albizia amara, A. lucida and A. richardiana, have differentiated shoot buds on B5 basal medium. Maximum number of shoots per explant developed on basal medium augmented with 2,4-D (0.1 μM) in A. amara (2) and BA (10 μM) for both A. lucida (2) and A. richardia...

    journal_title:Plant cell reports

    pub_type: 杂志文章

    doi:10.1007/BF00269518

    authors: Tomar UK,Gupta SC

    更新日期:1988-10-01 00:00:00

  • Introduction of foreign genes into Pharbitis nil calli using a vector derived from Agrobacterium pTi.

    abstract::Transgenic calli of Pharbitis nil which grow in the presence of kanamycin were obtained by introduction of plasmid pBI121, which carries kanamycin resistance and the gene for beta-glucuronidase. The calli were shown to have fragments of vector DNA in their genome and high levels of beta-glucuronidase activity. This is...

    journal_title:Plant cell reports

    pub_type: 杂志文章

    doi:10.1007/BF00274124

    authors: Araki T,Hirano H,Naito S,Komeda Y

    更新日期:1989-05-01 00:00:00

  • High-efficiency biolistic co-transformation and regeneration of 'Chardonnay' (Vitis vinifera L.) containing npt-II and antimicrobial peptide genes.

    abstract::A reliable and efficient system for transformation and regeneration of 'Chardonnay' (Vitis vinifera L.) plants via microprojectile bombardment was developed. Improvements over the previous biolistic transformation system included: (1) the use of gold particles for bombardment; (2) step-wise selection at 10 then 15 mg/...

    journal_title:Plant cell reports

    pub_type: 杂志文章

    doi:10.1007/s00299-003-0682-x

    authors: Vidal JR,Kikkert JR,Wallace PG,Reisch BI

    更新日期:2003-11-01 00:00:00

  • The rice MAPKK-MAPK interactome: the biological significance of MAPK components in hormone signal transduction.

    abstract::Mitogen-activated protein kinase (MAPK) signaling cascades are evolutionarily conserved fundamental signal transduction pathways. A MAPK cascade consists of many distinct MAPKKK-MAPKK-MAPK modules linked to various upstream receptors and downstream targets through sequential phosphorylation and activation of the casca...

    journal_title:Plant cell reports

    pub_type: 杂志文章,评审

    doi:10.1007/s00299-013-1437-y

    authors: Singh R,Jwa NS

    更新日期:2013-06-01 00:00:00

  • A continuous culture system of direct somatic embryogenesis in microspore-derived embryos of Brassica juncea.

    abstract::An efficient culture system has been developed for repeated cycles of somatic embryogenesis in microspore-derived embryos of Brassica juncea without a callus phase. Haploid embryos produced through anther culture showed a high propensity for direct production of somatic embryos in response to 2 mgL(-1) BA and 0.1 mgL(...

    journal_title:Plant cell reports

    pub_type: 杂志文章

    doi:10.1007/BF00237138

    authors: Prabhudesai V,Bhaskaran S

    更新日期:1993-03-01 00:00:00

  • Transformation of barley scutellum protoplasts: regeneration of fertile transgenic plants.

    abstract:: A system for barley transformation via polyethyleneglycol-mediated DNA uptake into protoplasts isolated directly from scutella and the regeneration of transgenic plants is reported. Scutellum protoplasts (cv. Clipper, an Australian malting cultivar) were co-transformed with plasmids Act 1-DGUS, containing the marker ...

    journal_title:Plant cell reports

    pub_type: 杂志文章

    doi:10.1007/s002990000220

    authors: Nobre J,Davey MR,Lazzeri PA,Cannell ME

    更新日期:2000-10-01 00:00:00