cDNA cloning, structural analysis, SNP detection and tissue expression profile of the IGF1 gene in Malabari and Attappady Black goats of India.

Abstract:

:Insulin-like growth factor 1 (IGF1) plays an important role in growth, reproduction, foetal development and cell proliferation. The present study was conducted to clone and sequence the full-length coding sequence of the caprine IGF1 gene from Attappady Black and Malabari breeds, two indigenous goat breeds of south India, to analyse its structure, and to ascertain the relative abundance of IGF1 mRNA in different tissues. The caprine IGF1 cDNA (GenBank accession nos: KJ549851 and KJ549852) contained a 465-bp open reading frame encoding IGF1 protein with 154 amino acid residues. A novel SNP was detected in the 3'UTR region, g.931A>G. Genotyping was performed in 277 goats from the two genetic groups using the PCR-single strand conformational polymorphism (SSCP) and two genotypes, AA and AG were observed at this locus. IGF1 is a secretary pathway protein with 49 amino acid-long signal peptide with 19 phosphorylation sites. Caprine IGF1 amino acid sequence was 83-99% identical to other species with highest identity with the ruminants. Relative expression of IGF1 was highest in uterus and liver (P < 0.05), followed by oviduct and muscle. This work provided an important experimental basis for further research on the functions of IGF1 in goats.

journal_name

J Genet

journal_title

Journal of genetics

authors

Naicy T,Venkatachalapathy T,Aravindakshan T,Raghavan KC,Mini M,Shyama K

doi

10.1007/s12041-017-0762-2

subject

Has Abstract

pub_date

2017-06-01 00:00:00

pages

307-312

issue

2

eissn

0022-1333

issn

0973-7731

journal_volume

96

pub_type

杂志文章
  • Shared mechanisms among neurodegenerative diseases: from genetic factors to gene networks.

    abstract::Neurodegenerative diseases such as Alzheimer's disease, Parkinson's disease, and amyotrophic lateral sclerosis are pressing health concerns in modern societies for which effective therapies are still lacking. Recent high-throughput genomic technologies have enabled genome-scale, multidimensional investigations to faci...

    journal_title:Journal of genetics

    pub_type: 杂志文章,评审

    doi:

    authors: Arneson D,Zhang Y,Yang X,Narayanan M

    更新日期:2018-07-01 00:00:00

  • Novel alternatively spliced isoforms of MEF2A and their mRNA expression patterns in pigs.

    abstract::The present study aimed to identify the alternatively spliced isoforms of pig MEF2A gene and to determine theirmRNA expression patterns. Four alternatively spliced isoforms of pig MEF2A gene (i.e. MEF2A1, MEF2A2, MEF2A3 and MEF2A4) were cloned according to the results of transcriptome sequencing. The fifth to eighth e...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:

    authors: Guo XH,Zhang Q,Li M,Gao PF,Cao GQ,Cheng ZM,Zhang NF,Yu Le B,Liu JF,Liu XJ,Li BG

    更新日期:2018-09-01 00:00:00

  • Mitochondrial DNA sequence variation in Drosophilid species (Diptera: Drosophilidae) along altitudinal gradient from Central Himalayan region of India.

    abstract::Central Himalayan region of India encompasses varied ecological habitats ranging from near tropics to the mid-elevation forests dominated by cool-temperate taxa. In past, we have reported several new records and novel species from Uttarakhand state of India. Here, we assessed genetic variations in three mitochondrial ...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:10.1007/s12041-016-0646-x

    authors: Sarswat M,Dewan S,Fartyal RS

    更新日期:2016-06-01 00:00:00

  • Phenotypic effects of genetic variability in human clock genes on circadian and sleep parameters.

    abstract::Circadian rhythms and sleep are two separate but intimately related processes. Circadian rhythms are generated through the precisely controlled, cyclic expression of a number of genes designated clock genes. Genetic variability in these genes has been associated with a number of phenotypic differences in circadian as ...

    journal_title:Journal of genetics

    pub_type: 杂志文章,评审

    doi:10.1007/s12041-008-0074-7

    authors: von Schantz M

    更新日期:2008-12-01 00:00:00

  • Molecular population genetics of the beta-esterase gene cluster of Drosophila melanogaster.

    abstract::We have investigated nucleotide polymorphism at the beta-esterase gene cluster including the Est-6 gene and psiEst-6 putative pseudogene in four samples of Drosophila melanogaster derived from natural populations of southern Africa (Zimbabwe), Europe (Spain), North America (USA: California), and South America (Venezue...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:10.1007/BF02715813

    authors: Balakirev ES,Ayala FJ

    更新日期:2003-12-01 00:00:00

  • Genetic diversity, population structure and marker trait associations for seed quality traits in cotton (Gossypium hirsutum).

    abstract::Cottonseed contains 16% seed oil and 23% seed protein by weight. High levels of palmitic acid provides a degree of stability to the oil, while the presence of bound gossypol in proteins considerably changes their properties, including their biological value. This study uses genetic principles to identify genomic regio...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:10.1007/s12041-015-0489-x

    authors: Badigannavar A,Myers GO

    更新日期:2015-03-01 00:00:00

  • Intraspecific chromosomal and genetic polymorphism in Brassica napus L. detected by cytogenetic and molecular markers.

    abstract::The application of DNA intercalator 9-aminoacridine allowed us to increase the resolution of chromosome C-banding and DAPI-banding patterns and to investigate chromosomal polymorphism in karyotypes of seven spring and six winter rape varieties. It was shown that the pericentromeric and intercalary C-bands of most of t...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:10.1007/s12041-014-0351-6

    authors: Amosova AV,Zemtsova LV,Grushetskaya ZE,Samatadze TE,Mozgova GV,Pilyuk YE,Volovik VT,Melnikova NV,Zelenin AV,Lemesh VA,Muravenko OV

    更新日期:2014-04-01 00:00:00

  • Genetics of fruit yield and its component traits under different fruiting habit backgrounds in chilli (Capsicum annuum L.).

    abstract::The six basic generations (two parents, F1, F2 and backcrosses) of 14 crosses developed from nine parents differing in fruits node-1 and fruit orientation were evaluated to decipher the genetics of three quantitative traits (average fruit weight, fruits plant-1 and green fruit yield plant-1) during the rainly season o...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:

    authors: Anilkumar C,Mohan Rao A,Ramesh S,Bhavani B,Pranesh

    更新日期:2019-09-01 00:00:00

  • A genetic system on chromosome arm 1BL of wild emmer causes distorted segregation in common wheat.

    abstract::Nonrandom segregation ratios of alleles 'segregation distortion' can have a striking impact on transmission genetics, and with widespread availability of genetic markers has been shown to be a frequent phenomenon. To investigate the possible effect of genetic interaction on segregation distortion and genetic map const...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:

    authors: Miao Y,Yang S,Jiang Y,Rong J,Yu J

    更新日期:2018-12-01 00:00:00

  • Genes involved in the deformations of the shoot apical meristem in somatic embryos of Capsicum chinense Jacq.

    abstract::Somatic embryos (SE) of habanero pepper (Capsicum chinense Jacq.) represent persistent deformations in the shoot apical meristem (SAM), which inhibits their capacity to form organs and subsequently plants. In dicotyledonous plants, SAM is formed in the apex, between cotyledons and it plays a central role in postembryo...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:

    authors: Regla-Márquez CF,Avilés-Viñas SA,Canto-Flick A,Muñoz-Ramírez LS,Peña-Yam LP,Valle-Gough RE,Osorio-Montalvo PM,Pérez-Pastrana J,Santana-Buzzy N

    更新日期:2019-09-01 00:00:00

  • Axial distortion as a sensor of supercoil changes: a molecular model for the homeostatic regulation of DNA gyrase.

    abstract::Negative supercoiling stimulates transcription of many genes. In contrast, transcription of the genes coding for DNA gyrase is subject to a novel mechanism of autoregulation, wherein relaxation of the template DNA stimulates their transcription. Since DNA gyrase is the sole supercoiling activity in the eubacterial cel...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:10.1007/BF02717907

    authors: Unniraman S,Nagaraja V

    更新日期:2001-12-01 00:00:00

  • Association between KIAA0319 SNPs and risk of dyslexia: a meta-analysis.

    abstract::The aetiology of developmental dyslexia (DD) is complex; although candidate genes have been suggested, the molecular mechanism and risk factors remain unknown. The KIAA0319 gene is functionally related to neuronal migration and axon growth, and several studies have examined associations between KIAA0319 polymorphisms ...

    journal_title:Journal of genetics

    pub_type: 杂志文章,meta分析

    doi:

    authors: Deng KG,Zhao H,Zuo PX

    更新日期:2019-06-01 00:00:00

  • Association between genetic polymorphisms of long noncoding RNA H19 and cancer risk: a meta-analysis.

    abstract::Long noncoding RNA (lncRNA) H19, a well-known oncogenic lncRNA, is overexpressed in various cancers. Several studies have investigated the association between polymorphisms in lncRNA H19 and the risk of various cancer types; however, the findings were inconsistent. In this study, we performed a meta-analysis to identi...

    journal_title:Journal of genetics

    pub_type: 杂志文章,meta分析,评审

    doi:

    authors: Hashemi M,Moazeni-Roodi A,Sarabandi S,Karami S,Ghavami S

    更新日期:2019-09-01 00:00:00

  • Mediators of ocular angiogenesis.

    abstract::Angiogenesis is the formation of new blood vessels from pre-existing vasculature. Pathologic angiogenesis in the eye can lead to severe visual impairment. In our review, we discuss the roles of both pro-angiogenic and anti-angiogenic molecular players in corneal angiogenesis, proliferative diabetic retinopathy, exudat...

    journal_title:Journal of genetics

    pub_type: 杂志文章,评审

    doi:10.1007/s12041-009-0068-0

    authors: Qazi Y,Maddula S,Ambati BK

    更新日期:2009-12-01 00:00:00

  • Cloning, characterization and promoter analysis of common carp hairy/Enhancer-of-split-related gene, her6.

    abstract::Some members of hairy/Enhancer-of-split-related gene (HES) family have important effects on axial mesoderm segmentation and the establishment and maintenance of the somite fringe. In fishes, the her6 gene, a member of the HES family, is the homologue of hes1 in mammals and chicken. In this study, the her6 gene and its...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:10.1007/BF02935327

    authors: Liu J,Sun YH,Wang N,Wang YP,Zhu ZY

    更新日期:2006-12-01 00:00:00

  • Coexistence of three different Drosophila species by rescheduling their life history traits in a natural population.

    abstract::We present evidence for coexistence of three different Drosophila species by rescheduling their life history traits in a natural population using the same resource, at the same time and same place. D. ananassae has faster larval development time (DT) and faster DT(egg-fly) than other two species thus utilizing the res...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:10.1007/BF02715798

    authors: Yadav JP,Singh BN

    更新日期:2005-12-01 00:00:00

  • Correlation analysis of mandarin fish (Siniperca chuatsi) growth hormone gene polymorphisms and growth traits.

    abstract::Screening of trait-associated molecular markers can be used to enhance the efficiency of selective breeding. Previously, we produced the first high-density genetic linkage map for the mandarin fish (Siniperca chuatsi) and identified 11 quantitative-trait loci significantly associated with growth, of which one is locat...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:

    authors: Sun CF,Sun HL,Dong JJ,Tian YY,Hu J,Ye X

    更新日期:2019-06-01 00:00:00

  • Multidimensional analysis of Drosophila wing variation in Evolution Canyon.

    abstract::Environmental stress has been suggested to be a major evolutionary force, both through inducing strong selection and because of its direct impact on developmental buffering processes that alter the evolvability of organisms. In particular, temperature has attracted much attention because of its importance as an ecolog...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:10.1007/s12041-008-0063-x

    authors: Debat V,Cornette R,Korol AB,Nevo E,Soulet D,David JR

    更新日期:2008-12-01 00:00:00

  • Genomewide association study for economic traits in the large yellow croaker with different numbers of extreme phenotypes.

    abstract::A traditional genomewide association study (GWAS) detects genotype-phenotype associations by the vast number of genotyped individuals. This method requires large-scale samples and considerable sequencing costs. Extreme phenotypic sampling proposes make GWAS more cost-efficient and are applied more widely. With extreme...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:

    authors: Wan L,Dong L,Xiao S,Han Z,Wang X,Wang Z

    更新日期:2018-09-01 00:00:00

  • Allelic variations in Glu-1 and Glu-3 loci of historical and modern Iranian bread wheat (Triticum aestivum L.) cultivars.

    abstract::Proline and glutamine-rich wheat seed endosperm proteins are collectively referred to as prolamins. They are comprised of HMW-GSs, LMW-GSs and gliadins. HMW-GSs are major determinants of gluten elasticity and LMW-GSs considerably affect dough extensibility and maximum dough resistance. The inheritance of glutenin subu...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:10.1007/s12041-010-0025-y

    authors: Izadi-Darbandi A,Yazdi-Samadi B,Shanejat-Boushehri AA,Mohammadi M

    更新日期:2010-08-01 00:00:00

  • Allele mining across DREB1A and DREB1B in diverse rice genotypes suggest a highly conserved pathway inducible by low temperature.

    abstract::Low temperature stress is one of the major limiting factors affecting rice productivity in higher altitudes. DREB1A and DREB1B, are two transcription factors that have been reported to play key regulatory role in low temperature tolerance. In order to understand whether natural genetic variation in these two loci lead...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:10.1007/s12041-015-0507-z

    authors: Challam C,Ghosh T,Rai M,Tyagi W

    更新日期:2015-06-01 00:00:00

  • Genetic analysis of amino acid content in wheat grain.

    abstract::Complete diallel crosses with five parents of common wheat (Triticum aestivum L.) were conducted to analyse inheritance of 17 amino acid contents by using the genetic model including seed, cytoplasmic, maternal and environment interaction effects on quantitative traits of seeds in cereal crops. The results showed that...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:10.1007/s12041-014-0408-6

    authors: Jiang X,Wu P,Tian J

    更新日期:2014-08-01 00:00:00

  • CDKN2A and MC1R variants found in Cypriot patients diagnosed with cutaneous melanoma.

    abstract::The prevalence of genetic variants associated to cutaneous melanoma (CM) has never been determined within Cypriot melanomas. This study evaluates the frequency of variants in cyclin-dependent kinase inhibitor 2A (CDKN2A) and melanocortin-1 receptor (MC1R) in 32 patients diagnosed with CM. Other characteristics and ris...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:10.1007/s12041-017-0742-6

    authors: Koulermou G,Shammas C,Vassiliou A,Kyriakides TC,Costi C,Neocleous V,Phylactou LA,Pantelidou M

    更新日期:2017-03-01 00:00:00

  • Identification of QTLs in oil palm (Elaeis guineensis Jacq.) using SSR markers through association mapping.

    abstract::Oil palm (Elaeis guineensis Jacq.) is a perennial vegetable and a high oil-yielding crop (4-6 t/ha). There is a large scope for increasing the oil yield by selecting elite planting material for breeding programme in germplasm evaluation, characterization and utilization. In the present study, a diverse range of 150 oi...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:

    authors: Bhagya HP,Kalyana Babu B,Gangadharappa PM,Naika MBN,Satish D,Mathur RK

    更新日期:2020-01-01 00:00:00

  • Detection of QTL for panicle architecture in F2 population of rice.

    abstract::Panicle traits are the most important agronomic characters which directly relate to yield in rice. Panicle length (PL) being one of the major components of rice panicle structure is controlled by quantitative trait loci (QTLs). In our research, conducted at Research Farm of SKUAST-J, crosses of parental lines K343 and...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:

    authors: Bhat R,Singh AK,Salgotra RK,Sharma M,Mushtaq M,Bagati S,Hangloo S,Singh A

    更新日期:2019-06-01 00:00:00

  • J. B. S. Haldane and the origin of life.

    abstract::In 1929 the British biologist John Burdon Sanderson Haldane published a hypothesis on the origin of life on earth, which was one of the most emblematic of the interwar period. It was a scenario describing the progressive evolution of matter on the primitive earth and the emergence of life. Firstly, this paper presents...

    journal_title:Journal of genetics

    pub_type: 传,历史文章,杂志文章

    doi:10.1007/s12041-017-0831-6

    authors: Tirard S

    更新日期:2017-11-01 00:00:00

  • Genetics of ulcerative colitis: putting into perspective the incremental gains from Indian studies.

    abstract::Ulcerative colitis (UC), one of the two clinical subtypes of inflammatory bowel disease is perceived as a potential 'sleeping giant' in the Indian subcontinent. Clinical manifestation is overall believed to be the same across ethnic groups but overwhelming genetics from large European and fewer non-European studies ha...

    journal_title:Journal of genetics

    pub_type: 杂志文章,评审

    doi:

    authors: Juyal G,Sood A,Midha V,Thelma BK

    更新日期:2018-12-01 00:00:00

  • Study of the association of forkhead box P3 (FOXP3) gene polymorphisms with unexplained recurrent spontaneous abortions in Indian population.

    abstract::Recurrent spontaneous abortions (RSA) is defined as three or more consecutive pregnancy losses before 20 weeks of gestation. Various causes of RSA have been identified, still 50% cases remain unexplained after evaluation. One of the causes of unexplained recurrent spontaneous abortions (URSA) is supposed to be the dis...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:

    authors: Mishra S,Srivastava A,Mandal K,Phadke SR

    更新日期:2018-06-01 00:00:00

  • Neuro-fuzzy model of homocysteine metabolism.

    abstract::In view of well-documented association of hyperhomocysteinaemia with a wide spectrum of diseases and higher incidence of vitamin deficiencies in Indians, we proposed a mathematical model to forecast the role of demographic and genetic variables in influencing homocysteinemetabolism and investigated the influence of li...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:10.1007/s12041-017-0856-x

    authors: Naushad SM,Rama Devi AR,Nivetha S,Lakshmitha G,Stanley AB,Hussain T,Kutala VK

    更新日期:2017-12-01 00:00:00

  • Characterization and tissue distribution of Lhx9 and Lhx9α in Chinese giant salamander Andrias davidianus.

    abstract::Lhx9 is an LIM (named for the first three proteins in which the domain was found, Lin-11, Isl1 and Mec-3) homeodomain protein involved in development and differentiation of the gonad. In this study, we isolated the full-length Lhx9 and Lhx9α from Andrias davidianus, detected the tissue distribution and analysed the me...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:10.1007/s12041-016-0685-3

    authors: Hu Q,Tian H,Meng Y,Xiao H

    更新日期:2016-09-01 00:00:00