Novel alternatively spliced isoforms of MEF2A and their mRNA expression patterns in pigs.

Abstract:

:The present study aimed to identify the alternatively spliced isoforms of pig MEF2A gene and to determine theirmRNA expression patterns. Four alternatively spliced isoforms of pig MEF2A gene (i.e. MEF2A1, MEF2A2, MEF2A3 and MEF2A4) were cloned according to the results of transcriptome sequencing. The fifth to eighth exons of MEF2A1 were normally spliced. In MEF2A2, the fifth exon was missing; the sixth exon had an extra 138 bp at its 5' end, and the seventh exon had an extra 102 bp at its 3' end. In MEF2A3, the fifth exon was missing, and the sixth exon had an additional 138 bp at its 5' end. In MEF2A4, the seventh exon had an extra 102 bp at its 3' end. Quantitative real-time polymerase chain reaction (qPCR) analysis indicated that the expression profiles of the four alternatively spliced transcripts in the longissimus dorsi differed between the Mashen and Large White pigs. MEF2A1 and MEF2A2 expression levels were the highest at 90 days of age and lowest at 180 days of age. MEF2A3 and MEF2A4 expression levels increased with age (in days). The four alternatively spliced isoforms of MEF2A were also expressed in the small intestine, cerebellum, pancreas, heart and lung. The discovery of new alternatively spliced transcripts of the MEF2A gene may be utilized in understanding its biological functions.

journal_name

J Genet

journal_title

Journal of genetics

authors

Guo XH,Zhang Q,Li M,Gao PF,Cao GQ,Cheng ZM,Zhang NF,Yu Le B,Liu JF,Liu XJ,Li BG

subject

Has Abstract

pub_date

2018-09-01 00:00:00

pages

977-985

issue

4

eissn

0022-1333

issn

0973-7731

journal_volume

97

pub_type

杂志文章
  • Genetic analysis of amino acid content in wheat grain.

    abstract::Complete diallel crosses with five parents of common wheat (Triticum aestivum L.) were conducted to analyse inheritance of 17 amino acid contents by using the genetic model including seed, cytoplasmic, maternal and environment interaction effects on quantitative traits of seeds in cereal crops. The results showed that...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:10.1007/s12041-014-0408-6

    authors: Jiang X,Wu P,Tian J

    更新日期:2014-08-01 00:00:00

  • Narrow gene pool can threaten the survival of Calamus nagbettai R. R. Fernald & Dey: a highly, endemic dioecious rattan species in the Western Ghats of India.

    abstract::Rattans, the spiny climbing palms of Arecaceae (Palmae) family exhibit high endemism to the biodiversity hot spots in India. Of the five rattan genera, Calamus is the only genus found in peninsular India with 15 of 21 species, endemic to the Western Ghats. The extensive utilization of rattans owing to their strength, ...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:

    authors: Dev SA,Balakrishnan S,Kurian A,Sreekumar VB

    更新日期:2019-11-01 00:00:00

  • Novel mutation of type-1 insulin-like growth factor receptor (IGF-1R) gene in a severe short stature pedigree identified by targeted next-generation sequencing.

    abstract::Insulin-like growth factor receptor (IGF-1R) deficiency is a rare form of short stature, and is difficult to clinically diagnose. Targeted next-generation sequencing (NGS) allows for the rapid and inexpensive assessment of short stature. We identified mutations in the pedigree of a Chinese boy with severe short statur...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:

    authors: Yang Y,Huang H,Chen K,Yang L,Xie LL,Xiong T,Wu X

    更新日期:2019-03-01 00:00:00

  • Mitogenome analysis of dwarf pufferfish (Carinotetraodon travancoricus) endemic to southwest India and its implications in the phylogeny of Tetraodontidae.

    abstract::The Tetraodontidae (pufferfishes), is primarily a family of marine and estuarine fishes with a limited number of freshwater species. Freshwater invasions can be observed in South America, Southeast Asia and central Africa. In the present study, we have analysed the complete mitogenome of freshwater pufferfish, Carinot...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:

    authors: Sathyajith C,Yamanoue Y,Yokobori SI,Thampy S,Vattiringal Jayadradhan RK

    更新日期:2019-12-01 00:00:00

  • Association between genetic polymorphisms of long noncoding RNA H19 and cancer risk: a meta-analysis.

    abstract::Long noncoding RNA (lncRNA) H19, a well-known oncogenic lncRNA, is overexpressed in various cancers. Several studies have investigated the association between polymorphisms in lncRNA H19 and the risk of various cancer types; however, the findings were inconsistent. In this study, we performed a meta-analysis to identi...

    journal_title:Journal of genetics

    pub_type: 杂志文章,meta分析,评审

    doi:

    authors: Hashemi M,Moazeni-Roodi A,Sarabandi S,Karami S,Ghavami S

    更新日期:2019-09-01 00:00:00

  • Detection of QTL for panicle architecture in F2 population of rice.

    abstract::Panicle traits are the most important agronomic characters which directly relate to yield in rice. Panicle length (PL) being one of the major components of rice panicle structure is controlled by quantitative trait loci (QTLs). In our research, conducted at Research Farm of SKUAST-J, crosses of parental lines K343 and...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:

    authors: Bhat R,Singh AK,Salgotra RK,Sharma M,Mushtaq M,Bagati S,Hangloo S,Singh A

    更新日期:2019-06-01 00:00:00

  • Three novel and two known androgen receptor gene mutations associated with androgen insensitivity syndrome in sex-reversed XY female patients.

    abstract::Molecular characterization of 23 cytogenetically confirmed XY females was attempted by screening coding regions of SRY and androgen receptor (AR) genes. Five of the index cases showed sequence variations in various exons of the AR gene: a deletion (n.1911delG) and substitutions n.1761G>A and n.1317C>T in exon 1; n.351...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:10.1007/s12041-016-0716-0

    authors: Saranya B,Bhavani G,Arumugam B,Jayashankar M,Santhiya ST

    更新日期:2016-12-01 00:00:00

  • Genetics of fruit yield and its component traits under different fruiting habit backgrounds in chilli (Capsicum annuum L.).

    abstract::The six basic generations (two parents, F1, F2 and backcrosses) of 14 crosses developed from nine parents differing in fruits node-1 and fruit orientation were evaluated to decipher the genetics of three quantitative traits (average fruit weight, fruits plant-1 and green fruit yield plant-1) during the rainly season o...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:

    authors: Anilkumar C,Mohan Rao A,Ramesh S,Bhavani B,Pranesh

    更新日期:2019-09-01 00:00:00

  • Intraspecific chromosomal and genetic polymorphism in Brassica napus L. detected by cytogenetic and molecular markers.

    abstract::The application of DNA intercalator 9-aminoacridine allowed us to increase the resolution of chromosome C-banding and DAPI-banding patterns and to investigate chromosomal polymorphism in karyotypes of seven spring and six winter rape varieties. It was shown that the pericentromeric and intercalary C-bands of most of t...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:10.1007/s12041-014-0351-6

    authors: Amosova AV,Zemtsova LV,Grushetskaya ZE,Samatadze TE,Mozgova GV,Pilyuk YE,Volovik VT,Melnikova NV,Zelenin AV,Lemesh VA,Muravenko OV

    更新日期:2014-04-01 00:00:00

  • Mining of expressed sequence tag libraries of cacao for microsatellite markers using five computational tools.

    abstract::Expressed sequence tags (ESTs) provide researchers with a quick and inexpensive route for discovering new genes, data on gene expression and regulation, and also provide genic markers that help in constructing genome maps. Cacao is an important perennial crop of humid tropics. Cacao EST sequences, as available in the ...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:10.1007/s12041-009-0030-1

    authors: Riju A,Rajesh MK,Sherin PT,Chandrasekar A,Apshara SE,Arunachalam V

    更新日期:2009-08-01 00:00:00

  • Correlation analysis of mandarin fish (Siniperca chuatsi) growth hormone gene polymorphisms and growth traits.

    abstract::Screening of trait-associated molecular markers can be used to enhance the efficiency of selective breeding. Previously, we produced the first high-density genetic linkage map for the mandarin fish (Siniperca chuatsi) and identified 11 quantitative-trait loci significantly associated with growth, of which one is locat...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:

    authors: Sun CF,Sun HL,Dong JJ,Tian YY,Hu J,Ye X

    更新日期:2019-06-01 00:00:00

  • Association of a common rs9939609 variant in the fat mass and obesity-associated (FTO) gene with obesity and metabolic phenotypes in a Taiwanese population: a replication study.

    abstract::It is a key challenge to conduct reproducibility in genetic research, especially association studies in obesity. While susceptibility of a single-nucleotide polymorphism (SNP), rs9939609, in the fat mass and obesity-associated (FTO) gene to obesity has been reported in various populations, data from Asians is less con...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:10.1007/s12041-016-0671-9

    authors: Hsiao TJ,Lin E

    更新日期:2016-09-01 00:00:00

  • Signatures of positive selection on the hepatic lipase gene in human populations.

    abstract::The hepatic lipase plays a central role in the lipid metabolism, catalyzing the hydrolysis of phospholipids, monoglycerides, diglycerides, and triglycerides, and acyl-CoA. It is also implied in the conversion of very low-density lipoprotein and intermediate density lipoprotein to low density lipoproteins. As a consequ...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:

    authors: Flores SV,Olivari CF,Prado LF

    更新日期:2020-03-01 00:00:00

  • Genetic variants of FOXP1 and FOXF1 are associated with the susceptibility of oesophageal adenocarcinoma in Chinese population.

    abstract::This study aimed to investigate whether the genetic variants of CRTC1, BARX1, FOXP1 and FOXF1 are associated with the development of oesophageal adenocarcinoma (OA) in Chinese population. A total of 744 OA patients and 1138 controls were included in this study. Here we genotyped four SNPs, rs10419226 of CRTC1, rs11789...

    journal_title:Journal of genetics

    pub_type: 杂志文章,多中心研究

    doi:

    authors: Zhang J,Chen J,Ma T,Guo H,Yang B

    更新日期:2018-03-01 00:00:00

  • Genetic analysis of signal peptides in amphibian antimicrobial secretions.

    abstract::Amphibian secretion is an important source of bioactive molecules that naturally protect the skin against noxious microorganisms. Collectively called antimicrobial peptides (AMPs), these molecules have a wide spectrum of action, targeting viruses, bacteria and fungi. Like many membrane and secreted proteins, AMPs have...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:

    authors: Pérez LO,Cancelarich NL,Aguilar S,Basso NG,Marani MM

    更新日期:2018-12-01 00:00:00

  • Characterization of bZIP transcription factors from Dimocarpus longan Lour. and analysis of their tissue-specific expression patterns and response to heat stress.

    abstract::Members of the bZIP transcription factor family play crucial roles in the regulation of plant development, biosynthesis of secondary metabolites, and response to abiotic and biotic stresses. To date, multiple bZIPs have been identified and investigated in numerous plant species. However, few studies have characterized...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:

    authors: Zheng W,Xie T,Yu X,Chen N,Zhang Z

    更新日期:2020-01-01 00:00:00

  • Shared mechanisms among neurodegenerative diseases: from genetic factors to gene networks.

    abstract::Neurodegenerative diseases such as Alzheimer's disease, Parkinson's disease, and amyotrophic lateral sclerosis are pressing health concerns in modern societies for which effective therapies are still lacking. Recent high-throughput genomic technologies have enabled genome-scale, multidimensional investigations to faci...

    journal_title:Journal of genetics

    pub_type: 杂志文章,评审

    doi:

    authors: Arneson D,Zhang Y,Yang X,Narayanan M

    更新日期:2018-07-01 00:00:00

  • Genetic mapping and QTL analysis of agronomic traits in Indian Mucuna pruriens using an intraspecific F₂population.

    abstract::Mucuna pruriens is a well-recognized agricultural and horticultural crop with important medicinal use. However, antinutritional factors in seed and adverse morphological characters have negatively affected its cultivation. To elucidate the genetic control of agronomic traits, an intraspecific genetic linkage map of In...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:10.1007/s12041-015-0602-1

    authors: Mahesh S,Leelambika M,Jaheer M,Anithakumari AM,Sathyanarayana N

    更新日期:2016-03-01 00:00:00

  • MiR-27b promotes sheep skeletal muscle satellite cell proliferation by targeting myostatin gene.

    abstract::To investigate the role of miR-27b in sheep skeletal muscle development, here we first cloned the sequence of sheep pre-miR-27b, then further investigated its expression pattern in sheep skeletal muscle in vivo, the relationship of miR-27b expression and sheep skeletal muscle satellite cell proliferation and different...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:

    authors: Zhang W,Wang SY,Deng SY,Gao L,Yang LW,Liu XN,Shi GQ

    更新日期:2018-12-01 00:00:00

  • Advances in the discovery of genetic risk factors for complex forms of neurodegenerative disorders: contemporary approaches, success, challenges and prospects.

    abstract::Neurodegenerative diseases constitute a large proportion of disorders in elderly, majority being sporadic in occurrence with ∼5-10% familial. A strong genetic component underlies the Mendelian forms but nongenetic factors together with genetic vulnerability contributes to the complex sporadic forms. Several gene disco...

    journal_title:Journal of genetics

    pub_type: 杂志文章,评审

    doi:

    authors: Kumar S,Yadav N,Pandey S,Thelma BK

    更新日期:2018-07-01 00:00:00

  • Genetic diversity and population structure of two endemic Cupressus (Cupressaceae) species on the Qinghai-Tibetan plateau.

    abstract::Cupressus gigantea and C. torulosa are ecologically and economically important endemic species of the conifer family Cupressaceae on the Qinghai-Tibetan plateau. C. gigantea was previously classified as a subspecies of C. torulosa because of their similar morphological characteristics and close distribution. In this s...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:

    authors: Fu Y,Li S,Guo Q,Zheng W,Yang R,Li H

    更新日期:2019-03-01 00:00:00

  • cDNA cloning, structural analysis, SNP detection and tissue expression profile of the IGF1 gene in Malabari and Attappady Black goats of India.

    abstract::Insulin-like growth factor 1 (IGF1) plays an important role in growth, reproduction, foetal development and cell proliferation. The present study was conducted to clone and sequence the full-length coding sequence of the caprine IGF1 gene from Attappady Black and Malabari breeds, two indigenous goat breeds of south In...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:10.1007/s12041-017-0762-2

    authors: Naicy T,Venkatachalapathy T,Aravindakshan T,Raghavan KC,Mini M,Shyama K

    更新日期:2017-06-01 00:00:00

  • Mediators of ocular angiogenesis.

    abstract::Angiogenesis is the formation of new blood vessels from pre-existing vasculature. Pathologic angiogenesis in the eye can lead to severe visual impairment. In our review, we discuss the roles of both pro-angiogenic and anti-angiogenic molecular players in corneal angiogenesis, proliferative diabetic retinopathy, exudat...

    journal_title:Journal of genetics

    pub_type: 杂志文章,评审

    doi:10.1007/s12041-009-0068-0

    authors: Qazi Y,Maddula S,Ambati BK

    更新日期:2009-12-01 00:00:00

  • Allelic structure and distribution of 103 STR loci in a Southern Tunisian population.

    abstract::Genotypes of 103 short tandem repeat (STR) markers distributed at an average of 40 cM intervals throughout the genome were determined for 40 individuals from the village of BirEl Hfai (BEH). This village of approximately 31,000 individuals is localized in the south-west of Tunisia. The allele frequency distributions i...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:10.1007/BF02715830

    authors: Maalej A,Rebai A,Ayadi A,Jouida J,Makni H,Ayadi H

    更新日期:2004-04-01 00:00:00

  • Coexistence of three different Drosophila species by rescheduling their life history traits in a natural population.

    abstract::We present evidence for coexistence of three different Drosophila species by rescheduling their life history traits in a natural population using the same resource, at the same time and same place. D. ananassae has faster larval development time (DT) and faster DT(egg-fly) than other two species thus utilizing the res...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:10.1007/BF02715798

    authors: Yadav JP,Singh BN

    更新日期:2005-12-01 00:00:00

  • Time for the zebrafish ENCODE.

    abstract::Genomics research in recent years, especially the human ENCODE project, have made great strides in understanding the genomic and epigenomic structure and organization of humans. These advances promise a new era of precision medicine, through a better understanding of the genomic correlates of human physiology and prom...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:10.1007/s12041-013-0313-4

    authors: Sivasubbu S,Sachidanandan C,Scaria V

    更新日期:2013-12-01 00:00:00

  • A minimum requirements method to isolate large quantities of highly purified DNA from one drop of poultry blood.

    abstract::Here, we describe a rapid, efficient and noncomplicated method for extracting poultry genomic DNA. This simple method obtains excellent qualities of molecular biology grade DNA in a matter of only about 15 min. A straightforward protocol is followed in this extraction procedure, in which, when the blood cells are plac...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:

    authors: Al-Shuhaib MBS

    更新日期:2018-08-24 00:00:00

  • Analysis of novel domain-specific mutations in the zebrafish ndr2/cyclops gene generated using CRISPR-Cas9 RNPs.

    abstract::Nodal-related protein (ndr2) is amember of the transforming growth factor type β superfamily of factors and is required for ventral midline patterning of the embryonic central nervous system in zebrafish. In humans, mutations in the gene encoding nodal cause holoprosencephaly and heterotaxy. Mutations in the ndr2 gene...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:

    authors: Turner AN,Andersen RS,Bookout IE,Brashear LN,Davis JC,Gahan DM,Davis JC,Gotham JP,Hijaz BA,Kaushik AS,Mcgill JB,Miller VL,Moseley ZP,Nowell CL,Patel RK,Rodgers MC,Patel RK,Shihab YA,Walker AP,Glover SR,Foster SD,

    更新日期:2018-12-01 00:00:00

  • Analysis of regulatory networks constructed based on gene coexpression in pituitary adenoma.

    abstract::Gene coexpression patterns can reveal gene collections with functional consistency. This study systematically constructs regulatory networks for pituitary tumours by integrating gene coexpression, transcriptional and posttranscriptional regulation. Through network analysis, we elaborate the incidence mechanism of pitu...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:10.1007/s12041-013-0299-y

    authors: Gong J,Diao B,Yao GJ,Liu Y,Xu GZ

    更新日期:2013-12-01 00:00:00

  • Mitochondrial DNA sequence variation in Drosophilid species (Diptera: Drosophilidae) along altitudinal gradient from Central Himalayan region of India.

    abstract::Central Himalayan region of India encompasses varied ecological habitats ranging from near tropics to the mid-elevation forests dominated by cool-temperate taxa. In past, we have reported several new records and novel species from Uttarakhand state of India. Here, we assessed genetic variations in three mitochondrial ...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:10.1007/s12041-016-0646-x

    authors: Sarswat M,Dewan S,Fartyal RS

    更新日期:2016-06-01 00:00:00