Correlation analysis of mandarin fish (Siniperca chuatsi) growth hormone gene polymorphisms and growth traits.

Abstract:

:Screening of trait-associated molecular markers can be used to enhance the efficiency of selective breeding. Previously, we produced the first high-density genetic linkage map for the mandarin fish (Siniperca chuatsi) and identified 11 quantitative-trait loci significantly associated with growth, of which one is located within the growth hormone (GH) gene. To investigate the GH gene polymorphisms and their correlation with growth, the complete sequence was cloned and 32 single-nucleotide polymorphisms (SNPs) and one simple-sequence repeat (SSR) were identified. Of which, eight SNPs (G1-G8) and the SSR (GH-AG)were selected for genotyping and correlation analysis with growth traits in a random population. The results showed that the four novel polymorphicloci (G1, G2, G3 and GH-AG) were significantly correlated with growth traits of mandarin fish (P < 0.05). Of these, G1, G3 and GH-AG showed highly significant correlations with multiple growth traits (P < 0.01) and the combined SNP analysis showed that G1-G3 formed four effective diplotypes (D1-D4), among which D1 was highly significantly greater than D4 (P < 0.01) for some important growth traits. In conclusion, our results show that the four polymorphic loci G1-G3 and GH-AG within the mandarin fish GH gene are significantly correlated with growth traits and could be used as candidate molecular markers for selective breedingof superior varieties of mandarin fish.

journal_name

J Genet

journal_title

Journal of genetics

authors

Sun CF,Sun HL,Dong JJ,Tian YY,Hu J,Ye X

subject

Has Abstract

pub_date

2019-06-01 00:00:00

issue

2

eissn

0022-1333

issn

0973-7731

journal_volume

98

pub_type

杂志文章
  • Analysis of novel domain-specific mutations in the zebrafish ndr2/cyclops gene generated using CRISPR-Cas9 RNPs.

    abstract::Nodal-related protein (ndr2) is amember of the transforming growth factor type β superfamily of factors and is required for ventral midline patterning of the embryonic central nervous system in zebrafish. In humans, mutations in the gene encoding nodal cause holoprosencephaly and heterotaxy. Mutations in the ndr2 gene...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:

    authors: Turner AN,Andersen RS,Bookout IE,Brashear LN,Davis JC,Gahan DM,Davis JC,Gotham JP,Hijaz BA,Kaushik AS,Mcgill JB,Miller VL,Moseley ZP,Nowell CL,Patel RK,Rodgers MC,Patel RK,Shihab YA,Walker AP,Glover SR,Foster SD,

    更新日期:2018-12-01 00:00:00

  • Cloning, characterization and promoter analysis of common carp hairy/Enhancer-of-split-related gene, her6.

    abstract::Some members of hairy/Enhancer-of-split-related gene (HES) family have important effects on axial mesoderm segmentation and the establishment and maintenance of the somite fringe. In fishes, the her6 gene, a member of the HES family, is the homologue of hes1 in mammals and chicken. In this study, the her6 gene and its...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:10.1007/BF02935327

    authors: Liu J,Sun YH,Wang N,Wang YP,Zhu ZY

    更新日期:2006-12-01 00:00:00

  • Variants in the interleukin-1 alpha and beta genes, and the risk for periodontal disease in dogs.

    abstract::Elevated levels of interleukin-1 (IL-1) have been shown to amplify the inflammatory response against periodontopathogenic bacteria.In humans,polymorphisms in the IL1A and IL1B genes are the most well-studied genetic polymorphisms associated with periodontal disease (PD). In contrast to human, there is a lack of knowle...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:10.1007/s12041-015-0576-z

    authors: Albuquerque C,Morinha F,Magalhães J,Requicha J,Dias I,Guedes-Pinto H,Bastos E,Viegas C

    更新日期:2015-12-01 00:00:00

  • Accelerated molecular evolution of insect orthologues of ERG28/C14orf1: a link with ecdysteroid metabolism?

    abstract::We have analysed the evolution of ERG28/C14orf1, a gene coding for a protein involved in sterol biosynthesis. While primary sequence of the protein is well conserved in all organisms able to synthesize sterols de novo, strong divergence is noticed in insects, which are cholesterol auxotrophs. In spite of this virtual ...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:10.1007/BF02811414

    authors: Veitia RA,Hurst LD

    更新日期:2001-04-01 00:00:00

  • Identification and introgression of QTLs implicated in resistance to sorghum downy mildew (Peronosclerospora sorghi (Weston and Uppal) C. G. Shaw) in maize through marker-assisted selection.

    abstract::Sorghum downy mildew caused by Peronosclerospora sorghi is a major disease of maize and resistance is under the control of polygenes which necessitated identification of quantitative-trait loci (QTLs) for initiating marker-assisted introgression of resistant QTLs in elite susceptible inbred lines. In the present study...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:10.1007/s12041-015-0590-1

    authors: Lohithaswa HC,Jyothi K,Sunil Kumar KR,Puttaramanaik,Hittalmani S

    更新日期:2015-12-01 00:00:00

  • Identification of genes involved in cold-shock response in rainbow trout (Oncorhynchus mykiss).

    abstract::A rapid decline in temperature poses a major challenge for poikilothermic fish, as their entire metabolism depends on ambient temperature. The gene expression of rainbow trout Oncorhynchus mykiss having undergone such a cold shock (0◦C) was compared to a control (5◦C) in a microarray and quantitative real-time PCR bas...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:10.1007/s12041-017-0811-x

    authors: Borchel A,Verleih M,Rebl A,Goldammer T

    更新日期:2017-09-01 00:00:00

  • Molecular genetic analysis of consanguineous families with primary microcephaly identified pathogenic variants in the ASPM gene.

    abstract::Autosomal recessive primary microcephaly is a rare genetic disorder that is characterized by reduced head circumference and a varying degree of intellectual disability. Genetic studies on consanguineous families with primary microcephaly have identified 15 (MCPH) causative genes that include MCPH1, WDR62, CDK5RAP2, CA...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:10.1007/s12041-017-0759-x

    authors: Khan MA,Windpassinger C,Ali MZ,Zubair M,Gul H,Abbas S,Khan S,Badar M,Mohammad RM,Nawaz Z

    更新日期:2017-06-01 00:00:00

  • Allele mining across DREB1A and DREB1B in diverse rice genotypes suggest a highly conserved pathway inducible by low temperature.

    abstract::Low temperature stress is one of the major limiting factors affecting rice productivity in higher altitudes. DREB1A and DREB1B, are two transcription factors that have been reported to play key regulatory role in low temperature tolerance. In order to understand whether natural genetic variation in these two loci lead...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:10.1007/s12041-015-0507-z

    authors: Challam C,Ghosh T,Rai M,Tyagi W

    更新日期:2015-06-01 00:00:00

  • The first complete mitochondrial genome from Bostrychus genus (Bostrychus sinensis) and partitioned Bayesian analysis of Eleotridae fish phylogeny.

    abstract::To understand the phylogenetic position of Bostrychus sinensis in Eleotridae and the phylogenetic relationships of the family, we determined the nucleotide sequence of the mitochondrial (mt) genome of Bostrychus sinensis. It is the first complete mitochondrial genome sequence of Bostrychus genus. The entire mtDNA sequ...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:10.1007/s12041-013-0259-6

    authors: Wei T,Jin XX,Xu TJ

    更新日期:2013-01-01 00:00:00

  • A genome scan for quantitative trait loci affecting average daily gain and Kleiber ratio in Baluchi Sheep.

    abstract::Genomewide association study (GWAS) is an efficient tool for the detection of SNPs and candidate genes in quantitative traits. Growth rate is an important trait for increasing the meat production in sheep. A total of 96 Baluchi sheep were genotyped using Illumina Ovine SNP50 BeadChip to run a GWAS for an average daily...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:

    authors: Pasandideh M,Rahimi-Mianji G,Gholizadeh M

    更新日期:2018-06-01 00:00:00

  • Allelic structure and distribution of 103 STR loci in a Southern Tunisian population.

    abstract::Genotypes of 103 short tandem repeat (STR) markers distributed at an average of 40 cM intervals throughout the genome were determined for 40 individuals from the village of BirEl Hfai (BEH). This village of approximately 31,000 individuals is localized in the south-west of Tunisia. The allele frequency distributions i...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:10.1007/BF02715830

    authors: Maalej A,Rebai A,Ayadi A,Jouida J,Makni H,Ayadi H

    更新日期:2004-04-01 00:00:00

  • Study of the association of forkhead box P3 (FOXP3) gene polymorphisms with unexplained recurrent spontaneous abortions in Indian population.

    abstract::Recurrent spontaneous abortions (RSA) is defined as three or more consecutive pregnancy losses before 20 weeks of gestation. Various causes of RSA have been identified, still 50% cases remain unexplained after evaluation. One of the causes of unexplained recurrent spontaneous abortions (URSA) is supposed to be the dis...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:

    authors: Mishra S,Srivastava A,Mandal K,Phadke SR

    更新日期:2018-06-01 00:00:00

  • Intraspecific chromosomal and genetic polymorphism in Brassica napus L. detected by cytogenetic and molecular markers.

    abstract::The application of DNA intercalator 9-aminoacridine allowed us to increase the resolution of chromosome C-banding and DAPI-banding patterns and to investigate chromosomal polymorphism in karyotypes of seven spring and six winter rape varieties. It was shown that the pericentromeric and intercalary C-bands of most of t...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:10.1007/s12041-014-0351-6

    authors: Amosova AV,Zemtsova LV,Grushetskaya ZE,Samatadze TE,Mozgova GV,Pilyuk YE,Volovik VT,Melnikova NV,Zelenin AV,Lemesh VA,Muravenko OV

    更新日期:2014-04-01 00:00:00

  • Genetic mapping and QTL analysis of agronomic traits in Indian Mucuna pruriens using an intraspecific F₂population.

    abstract::Mucuna pruriens is a well-recognized agricultural and horticultural crop with important medicinal use. However, antinutritional factors in seed and adverse morphological characters have negatively affected its cultivation. To elucidate the genetic control of agronomic traits, an intraspecific genetic linkage map of In...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:10.1007/s12041-015-0602-1

    authors: Mahesh S,Leelambika M,Jaheer M,Anithakumari AM,Sathyanarayana N

    更新日期:2016-03-01 00:00:00

  • Allelic variations in Glu-1 and Glu-3 loci of historical and modern Iranian bread wheat (Triticum aestivum L.) cultivars.

    abstract::Proline and glutamine-rich wheat seed endosperm proteins are collectively referred to as prolamins. They are comprised of HMW-GSs, LMW-GSs and gliadins. HMW-GSs are major determinants of gluten elasticity and LMW-GSs considerably affect dough extensibility and maximum dough resistance. The inheritance of glutenin subu...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:10.1007/s12041-010-0025-y

    authors: Izadi-Darbandi A,Yazdi-Samadi B,Shanejat-Boushehri AA,Mohammadi M

    更新日期:2010-08-01 00:00:00

  • Genetics of ulcerative colitis: putting into perspective the incremental gains from Indian studies.

    abstract::Ulcerative colitis (UC), one of the two clinical subtypes of inflammatory bowel disease is perceived as a potential 'sleeping giant' in the Indian subcontinent. Clinical manifestation is overall believed to be the same across ethnic groups but overwhelming genetics from large European and fewer non-European studies ha...

    journal_title:Journal of genetics

    pub_type: 杂志文章,评审

    doi:

    authors: Juyal G,Sood A,Midha V,Thelma BK

    更新日期:2018-12-01 00:00:00

  • Physicochemical evolution and positive selection of the gymnosperm matK proteins.

    abstract::It is not clear whether matK evolves under Darwinian selection. In this study, the gymnosperm Taxaceae, Cephalotaxaceae and Pinaceae were used to illustrate the physicochemical evolution, molecular adaptation and evolutionary dynamics of gene divergence in matKs. matK sequences were amplified from 27 Taxaceae and 12 C...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:10.1007/s12041-010-0014-1

    authors: Hao da C,Mu J,Chen SL,Xiao PG

    更新日期:2010-04-01 00:00:00

  • Genetics of sex determination in the haplodiploid wasp Nasonia vitripennis (Hymenoptera: Chalcidoidea).

    abstract::The parasitoid wasp Nasonia vitripennis reproduces by haplodiploidy; males are haploid and females are diploid. Sex determination in Nasonia is not governed by complementary alleles at one or more sex loci. As in most other insects, the sex-determining pathway consists of the basal switch doublesex that is sex-specifi...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:10.1007/s12041-010-0045-7

    authors: Beukeboom LW,van de Zande L

    更新日期:2010-09-01 00:00:00

  • Case report of newborn with de novo partial trisomy 2q31.2-37.3 and monosomy 9p24.3.

    abstract::We describe a newborn female with a de novo duplication of chromosomes 2q31.2 and 2q37.3, and a de novo monosomy 9p24.3. The clinical findings of this patient include congenital heart defects, dysmorphic facial features, hypotonia, feeding difficulties and microcephaly. Ultrasonographic prenatal findings were negative...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:

    authors: Colangelo M,Alfonsi M,Palka C,Zio EZ,Renzo SD,Guanciali-Franchi P,Palka G

    更新日期:2018-03-01 00:00:00

  • The placental gateway of maternal transgenerational epigenetic inheritance.

    abstract::While much of our understanding of genetic inheritance is based on the genome of the organism, it is becoming clear that there is an ample amount of epigenetic inheritance, which though reversible, escapes erasing process during gametogenesis and goes on to the next generation. Several examples of transgenerational in...

    journal_title:Journal of genetics

    pub_type: 杂志文章,评审

    doi:10.1007/s12041-017-0788-5

    authors: Sailasree SP,Srivastava S,Mishra RK

    更新日期:2017-07-01 00:00:00

  • Mitogenome analysis of dwarf pufferfish (Carinotetraodon travancoricus) endemic to southwest India and its implications in the phylogeny of Tetraodontidae.

    abstract::The Tetraodontidae (pufferfishes), is primarily a family of marine and estuarine fishes with a limited number of freshwater species. Freshwater invasions can be observed in South America, Southeast Asia and central Africa. In the present study, we have analysed the complete mitogenome of freshwater pufferfish, Carinot...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:

    authors: Sathyajith C,Yamanoue Y,Yokobori SI,Thampy S,Vattiringal Jayadradhan RK

    更新日期:2019-12-01 00:00:00

  • Remarkable evolutionary conservation of SOX14 orthologues.

    abstract::SOX proteins constitute a large family of diverse, well-conserved transcription factors present in vertebrates and invertebrates, and also implicated in control of many developmental processes. Our objectives have been to identify Sox14 gene of goat (Capra hircus), cow (Bos taurus) and rat (Rattus norvegicus), and to ...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:10.1007/s12041-009-0003-4

    authors: Popovic J,Stevanovic M

    更新日期:2009-04-01 00:00:00

  • Association of IL-10 gene (-1082A>G, -819C>T and -592C>A) polymorphism and its serum level with metabolic syndrome of north Indian subjects.

    abstract::Metabolic syndrome (MetS) is an inflammatory disorder, in which various cytokines play important role in tilting balance towards disease state. Interleukin-10 (IL-10) is an important antiinflammatory cytokine, but its genetic polymorphisms and serum levels in Indian MetS subjects are unknown. Three IL-10 gene polymorp...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:10.1007/s12041-016-0738-7

    authors: Madeshiya AK,Singh S,Dwivedi S,Konwar R,Natu SM,Ghatak A

    更新日期:2017-03-01 00:00:00

  • Whitefly and aphid inducible promoters of Arabidopsis thaliana L.

    abstract::Lack of regulated expression and tissue specificity are the major drawbacks of plant and virus-derived constitutive promoters. A precise tissue or site-specific expression, facilitate regulated expression of proteins at the targeted time and site. Publically available microarray data on whitefly and aphid infested Ara...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:

    authors: Dubey NK,Mishra DK,Idris A,Nigam D,Singh PK,Sawant SV

    更新日期:2018-03-01 00:00:00

  • Nucleotide variation at the dopa decarboxylase (Ddc) gene in natural populations of Drosophila melanogaster.

    abstract::We studied nucleotide sequence variation at the gene coding for dopa decarboxylase (Ddc) in seven populations of Drosophila melanogaster. Strength and pattern of linkage disequilibrium are somewhat distinct in the extensively sampled Spanish and Raleigh populations. In the Spanish population, a few sites are in strong...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:10.1007/s12041-007-0017-8

    authors: Tatarenkov A,Ayala FJ

    更新日期:2007-08-01 00:00:00

  • Advances in the discovery of genetic risk factors for complex forms of neurodegenerative disorders: contemporary approaches, success, challenges and prospects.

    abstract::Neurodegenerative diseases constitute a large proportion of disorders in elderly, majority being sporadic in occurrence with ∼5-10% familial. A strong genetic component underlies the Mendelian forms but nongenetic factors together with genetic vulnerability contributes to the complex sporadic forms. Several gene disco...

    journal_title:Journal of genetics

    pub_type: 杂志文章,评审

    doi:

    authors: Kumar S,Yadav N,Pandey S,Thelma BK

    更新日期:2018-07-01 00:00:00

  • Genetic diversity and population structure of two endemic Cupressus (Cupressaceae) species on the Qinghai-Tibetan plateau.

    abstract::Cupressus gigantea and C. torulosa are ecologically and economically important endemic species of the conifer family Cupressaceae on the Qinghai-Tibetan plateau. C. gigantea was previously classified as a subspecies of C. torulosa because of their similar morphological characteristics and close distribution. In this s...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:

    authors: Fu Y,Li S,Guo Q,Zheng W,Yang R,Li H

    更新日期:2019-03-01 00:00:00

  • Time for the zebrafish ENCODE.

    abstract::Genomics research in recent years, especially the human ENCODE project, have made great strides in understanding the genomic and epigenomic structure and organization of humans. These advances promise a new era of precision medicine, through a better understanding of the genomic correlates of human physiology and prom...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:10.1007/s12041-013-0313-4

    authors: Sivasubbu S,Sachidanandan C,Scaria V

    更新日期:2013-12-01 00:00:00

  • Mediators of ocular angiogenesis.

    abstract::Angiogenesis is the formation of new blood vessels from pre-existing vasculature. Pathologic angiogenesis in the eye can lead to severe visual impairment. In our review, we discuss the roles of both pro-angiogenic and anti-angiogenic molecular players in corneal angiogenesis, proliferative diabetic retinopathy, exudat...

    journal_title:Journal of genetics

    pub_type: 杂志文章,评审

    doi:10.1007/s12041-009-0068-0

    authors: Qazi Y,Maddula S,Ambati BK

    更新日期:2009-12-01 00:00:00

  • Molecular characterization of zeta class glutathione S-transferases from Pinus brutia Ten.

    abstract::Glutathione transferases (GSTs; EC 2.5.1.18) play important roles in stress tolerance and metabolic detoxification in plants.In higher plants, studies on GSTs have focussed largely on agricultural plants. There is restricted information about molecular characterization of GSTs in gymnosperms. To date, only tau class G...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:10.1007/s12041-015-0538-5

    authors: Oztetik E,Kockar F,Alper M,Iscan M

    更新日期:2015-09-01 00:00:00