Characterization and tissue distribution of Lhx9 and Lhx9α in Chinese giant salamander Andrias davidianus.

Abstract:

:Lhx9 is an LIM (named for the first three proteins in which the domain was found, Lin-11, Isl1 and Mec-3) homeodomain protein involved in development and differentiation of the gonad. In this study, we isolated the full-length Lhx9 and Lhx9α from Andrias davidianus, detected the tissue distribution and analysed the methylation of the promoters. We identified Lhx9 of 1411 bp and Lhx9α of 1153-bp length, differing in the 3'-flanking region, encoding 399 and 330 amino acids, respectively. The Lhx9 gene was detected primarily in liver, ovary and heart with moderate expression in brain, pituitary, intestine and spleen, and low expression in the remaining examined tissues, while Lhx9α expression was high in heart, pituitary and liver, and low in spleen and stomach. Significantly higher Lhx9 expression was observed in ovary than in testis, with no differences in Lhx9α expression between testis and ovary observed. Bisulphite sequencing revealed significantly higher methylation in testis compared to ovary. The methylation level of CpG sites -733, -673, -615 and -594 exhibited significantly higher levels in testis than in ovary, which was negatively correlated with Lhx9 expression. The methylation and expression patterns suggested that promoter methylation suppressed expression of Lhx9 in A. davidianus.

journal_name

J Genet

journal_title

Journal of genetics

authors

Hu Q,Tian H,Meng Y,Xiao H

doi

10.1007/s12041-016-0685-3

subject

Has Abstract

pub_date

2016-09-01 00:00:00

pages

683-90

issue

3

eissn

0022-1333

issn

0973-7731

journal_volume

95

pub_type

杂志文章
  • Isolation and characterization of microsatellite markers in Garcinia gummi-gutta by next-generation sequencing and cross-species amplification.

    abstract::Garcinia gummi-gutta (L.) Roxb. (Clusiaceae) is an endemic, semidomesticated, fruit-yielding tree species distributed in the Western Ghats of India and Sri Lanka. Various bioactive phytochemicals, such as garcinol, benzophenones and xanthones are isolated from G. gummi-gutta and have shown antibacterial, antiviral and...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:10.1007/s12041-017-0756-0

    authors: Ravishankar KV,Vasudeva R,Hemanth B,Sandya BS,Sthapit BR,Parthasarathy VA,Rao VR

    更新日期:2017-06-01 00:00:00

  • Neuro-fuzzy model of homocysteine metabolism.

    abstract::In view of well-documented association of hyperhomocysteinaemia with a wide spectrum of diseases and higher incidence of vitamin deficiencies in Indians, we proposed a mathematical model to forecast the role of demographic and genetic variables in influencing homocysteinemetabolism and investigated the influence of li...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:10.1007/s12041-017-0856-x

    authors: Naushad SM,Rama Devi AR,Nivetha S,Lakshmitha G,Stanley AB,Hussain T,Kutala VK

    更新日期:2017-12-01 00:00:00

  • Identification of a human ABCC10 orthologue in Catharanthus roseus reveals a U12-type intron determinant for the N-terminal domain feature.

    abstract::ABC (ATP-binding cassette) transporters are members of a large superfamily of proteins that utilize ATP hydrolysis to translocate a wide range of substrates across biological membranes. In general, members of C subfamily (ABCC) are structurally characterized by an additional (N-terminal) transmembrane domain (TMD0). P...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:10.1007/s12041-014-0327-6

    authors: El-Guizani T,Guibert C,Triki S,St-Pierre B,Ducos E

    更新日期:2014-04-01 00:00:00

  • Characterizing miRNA and mse-tsRNA in fertile and subfertile yak bull spermatozoa from Arunachal Pradesh.

    abstract::Male fertility in farm animals is considered as an important economic trait. The phenomenon of spermatogenesis plays a dynamic functional role in determining the viability of sperm and thereby can impact on fertility-driven complications. The process of spermatogenesis is controlled by numerous molecular factors and r...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:

    authors: Pratim Das P,Sultana Begum S,Choudhury M,Medhi D,Paul V,Jyoti Das P

    更新日期:2020-01-01 00:00:00

  • Screening and identification of a microsatellite marker associated with sex in Wami tilapia, Oreochromis urolepis hornorum.

    abstract::In this study, primer pairs of 15 microsatellite markers associated with sex determination of tilapia were selected and amplified in Wami tilapia, Oreochromis urolepis hornorum. While one marker, UNH168, on linkage group 3 (LG3) was associated (P <0.001) with the phenotypic sex in the experimental population, nine gen...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:10.1007/s12041-016-0653-y

    authors: Zhu H,Liu Z,Lu M,Gao F,Ke X,Ma D,Huang Z,Cao J,Wang M

    更新日期:2016-06-01 00:00:00

  • Genetic analysis of signal peptides in amphibian antimicrobial secretions.

    abstract::Amphibian secretion is an important source of bioactive molecules that naturally protect the skin against noxious microorganisms. Collectively called antimicrobial peptides (AMPs), these molecules have a wide spectrum of action, targeting viruses, bacteria and fungi. Like many membrane and secreted proteins, AMPs have...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:

    authors: Pérez LO,Cancelarich NL,Aguilar S,Basso NG,Marani MM

    更新日期:2018-12-01 00:00:00

  • Nucleotide variation at the dopa decarboxylase (Ddc) gene in natural populations of Drosophila melanogaster.

    abstract::We studied nucleotide sequence variation at the gene coding for dopa decarboxylase (Ddc) in seven populations of Drosophila melanogaster. Strength and pattern of linkage disequilibrium are somewhat distinct in the extensively sampled Spanish and Raleigh populations. In the Spanish population, a few sites are in strong...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:10.1007/s12041-007-0017-8

    authors: Tatarenkov A,Ayala FJ

    更新日期:2007-08-01 00:00:00

  • Genetic diversity and population structure of two endemic Cupressus (Cupressaceae) species on the Qinghai-Tibetan plateau.

    abstract::Cupressus gigantea and C. torulosa are ecologically and economically important endemic species of the conifer family Cupressaceae on the Qinghai-Tibetan plateau. C. gigantea was previously classified as a subspecies of C. torulosa because of their similar morphological characteristics and close distribution. In this s...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:

    authors: Fu Y,Li S,Guo Q,Zheng W,Yang R,Li H

    更新日期:2019-03-01 00:00:00

  • Case report of newborn with de novo partial trisomy 2q31.2-37.3 and monosomy 9p24.3.

    abstract::We describe a newborn female with a de novo duplication of chromosomes 2q31.2 and 2q37.3, and a de novo monosomy 9p24.3. The clinical findings of this patient include congenital heart defects, dysmorphic facial features, hypotonia, feeding difficulties and microcephaly. Ultrasonographic prenatal findings were negative...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:

    authors: Colangelo M,Alfonsi M,Palka C,Zio EZ,Renzo SD,Guanciali-Franchi P,Palka G

    更新日期:2018-03-01 00:00:00

  • Association between KIAA0319 SNPs and risk of dyslexia: a meta-analysis.

    abstract::The aetiology of developmental dyslexia (DD) is complex; although candidate genes have been suggested, the molecular mechanism and risk factors remain unknown. The KIAA0319 gene is functionally related to neuronal migration and axon growth, and several studies have examined associations between KIAA0319 polymorphisms ...

    journal_title:Journal of genetics

    pub_type: 杂志文章,meta分析

    doi:

    authors: Deng KG,Zhao H,Zuo PX

    更新日期:2019-06-01 00:00:00

  • Identification of anthocyanin biosynthesis related microRNAs and total microRNAs in Lonicera edulis by high-throughput sequencing.

    abstract::miRNAs are important regulators of plant gene expression. There are few studies on the regulation of miRNAs in Lonicera edulis. We used high-throughput sequencing technology to analyse miRNAs in L. edulis, aiming to identify miRNAs and elucidate their function in L. edulis. In the present study, we employed the high-t...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:

    authors: Cui J,Gao Z,Li B,Li J,Li X,Wang C,Cheng D,Dai C

    更新日期:2020-01-01 00:00:00

  • The use of a genetic relationship matrix biases the best linear unbiased prediction.

    abstract::The best linear unbiased prediction (BLUP), derived from the linear mixed model (LMM), has been popularly used to estimate animal and plant breeding values (BVs) for a few decades. Conventional BLUP has a constraint that BVs are estimated from the assumed covariance among unknown BVs, namely conventional BLUP assumes ...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:

    authors: Kim B

    更新日期:2020-01-01 00:00:00

  • Association of PPARγ gene polymorphisms with osteoarthritis in a southeast Chinese population.

    abstract::Primary osteoarthritis (OA) is a leading cause of disability in developed countries. Currently no satisfactory treatment to stop disease progression exists. Recent studies suggest that activation of the transcription factor peroxisome proliferator-activated receptor gamma (PPARγ) is an interesting therapeutic target f...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:10.1007/s12041-014-0444-2

    authors: Zheru D,Peiliang F,Yuli W,Haishan W,Qirong Q,Xiaohua L,Hui Z,Bo W,Qiwei F

    更新日期:2014-12-01 00:00:00

  • Coexistence of three different Drosophila species by rescheduling their life history traits in a natural population.

    abstract::We present evidence for coexistence of three different Drosophila species by rescheduling their life history traits in a natural population using the same resource, at the same time and same place. D. ananassae has faster larval development time (DT) and faster DT(egg-fly) than other two species thus utilizing the res...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:10.1007/BF02715798

    authors: Yadav JP,Singh BN

    更新日期:2005-12-01 00:00:00

  • Eucalyptus microsatellites mined in silico: survey and evaluation.

    abstract::Eucalyptus is an important short rotation pulpy woody plant, grown widely in the tropics. Recently, many genomic programmes are underway leading to the accumulation of voluminous genomic and expressed sequence tag sequences in public databases. These sequences can be utilized for analysis of simple sequence repeats (S...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:10.1007/s12041-008-0003-9

    authors: Yasodha R,Sumathi R,Chezhian P,Kavitha S,Ghosh M

    更新日期:2008-04-01 00:00:00

  • Genes involved in the deformations of the shoot apical meristem in somatic embryos of Capsicum chinense Jacq.

    abstract::Somatic embryos (SE) of habanero pepper (Capsicum chinense Jacq.) represent persistent deformations in the shoot apical meristem (SAM), which inhibits their capacity to form organs and subsequently plants. In dicotyledonous plants, SAM is formed in the apex, between cotyledons and it plays a central role in postembryo...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:

    authors: Regla-Márquez CF,Avilés-Viñas SA,Canto-Flick A,Muñoz-Ramírez LS,Peña-Yam LP,Valle-Gough RE,Osorio-Montalvo PM,Pérez-Pastrana J,Santana-Buzzy N

    更新日期:2019-09-01 00:00:00

  • Allele mining across DREB1A and DREB1B in diverse rice genotypes suggest a highly conserved pathway inducible by low temperature.

    abstract::Low temperature stress is one of the major limiting factors affecting rice productivity in higher altitudes. DREB1A and DREB1B, are two transcription factors that have been reported to play key regulatory role in low temperature tolerance. In order to understand whether natural genetic variation in these two loci lead...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:10.1007/s12041-015-0507-z

    authors: Challam C,Ghosh T,Rai M,Tyagi W

    更新日期:2015-06-01 00:00:00

  • Evolution of increased larval competitive ability in Drosophila melanogaster without increased larval feeding rate.

    abstract::Multiple experimental evolution studies on Drosophila melanogaster in the 1980s and 1990s indicated that enhanced competitive ability evolved primarily through increased larval tolerance to nitrogenous wastes and increased larval feeding and foraging rate, at the cost of efficiency of food conversion to biomass, and t...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:10.1007/s12041-016-0656-8

    authors: Sarangi M,Nagarajan A,Dey S,Bose J,Joshi A

    更新日期:2016-09-01 00:00:00

  • Fitness differences due to allelic variation at Esterase-4 locus in Drosophila ananassae.

    abstract::Esterases are known to play essential role inmetabolism, reproductive physiology and behaviour of Drosophila. Esterases are highly polymorphic enzymes in Drosophila, but the polymorphism of these enzymes is not well studied in Drosophila ananassae. Recent studies on esterase polymorphism in D. ananassae revealed that ...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:10.1007/s12041-017-0814-7

    authors: Krishnamoorti K,Singh AK

    更新日期:2017-09-01 00:00:00

  • Signatures of positive selection on the hepatic lipase gene in human populations.

    abstract::The hepatic lipase plays a central role in the lipid metabolism, catalyzing the hydrolysis of phospholipids, monoglycerides, diglycerides, and triglycerides, and acyl-CoA. It is also implied in the conversion of very low-density lipoprotein and intermediate density lipoprotein to low density lipoproteins. As a consequ...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:

    authors: Flores SV,Olivari CF,Prado LF

    更新日期:2020-03-01 00:00:00

  • Association mapping for partial resistance to Phytophthora sojae in soybean (Glycine max (L.) Merr.).

    abstract::Association mapping is a powerful high-resolution mapping tool for complex traits. The objective of this study was to identify QTLs for partial resistance to Phytophthora sojae. In this study, we evaluated a total of 214 soybean accessions by the hypocotyl inoculation method, and 175 were susceptible. The 175 suscepti...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:10.1007/s12041-014-0383-y

    authors: Sun J,Guo N,Lei J,Li L,Hu G,Xing H

    更新日期:2014-08-01 00:00:00

  • Molecular population genetics of the beta-esterase gene cluster of Drosophila melanogaster.

    abstract::We have investigated nucleotide polymorphism at the beta-esterase gene cluster including the Est-6 gene and psiEst-6 putative pseudogene in four samples of Drosophila melanogaster derived from natural populations of southern Africa (Zimbabwe), Europe (Spain), North America (USA: California), and South America (Venezue...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:10.1007/BF02715813

    authors: Balakirev ES,Ayala FJ

    更新日期:2003-12-01 00:00:00

  • Matrix metalloproteinase gene polymorphisms in chronic periodontitis: a case-control study in the Indian population.

    abstract::Chronic periodontitis (CP) is the common form of inflammatory oral disease. Matrix metalloproteinases (MMPs) play a pivotal role in the progression of CP by degrading gingival tissue and its remodelling. Here, we conducted a case-control study to investigate a possible association of single-nucleotide polymorphism of ...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:

    authors: Majumder P,Ghosh S,Dey SK

    更新日期:2019-03-01 00:00:00

  • Eight paths of ERK1/2 signalling pathway regulating hepatocyte proliferation in rat liver regeneration.

    abstract::Although it is known that hormones, growth factors and integrin promote hepatocyte proliferation in liver regeneration (LR) through ERK1/2 signalling pathway, reports about regulating processes of its intracellular paths in hepatocytes of LR are limited. This study aims at exploring which paths of ERK1/2 signalling pa...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:

    authors: Li JW,Wang GP,Fan JY,Chang CF,Xu CS

    更新日期:2011-12-01 00:00:00

  • Mitogenome analysis of dwarf pufferfish (Carinotetraodon travancoricus) endemic to southwest India and its implications in the phylogeny of Tetraodontidae.

    abstract::The Tetraodontidae (pufferfishes), is primarily a family of marine and estuarine fishes with a limited number of freshwater species. Freshwater invasions can be observed in South America, Southeast Asia and central Africa. In the present study, we have analysed the complete mitogenome of freshwater pufferfish, Carinot...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:

    authors: Sathyajith C,Yamanoue Y,Yokobori SI,Thampy S,Vattiringal Jayadradhan RK

    更新日期:2019-12-01 00:00:00

  • Contribution of polymorphisms in ESR1, ESR2, FSHR, CYP19A1, SHBG, and NRIP1 genes to migraine susceptibility in Turkish population.

    abstract::Migraine, a highly prevalent headache disorder, is regarded as a polygenic multifactorial disease. Single-nucleotide polymorphisms (SNPs) in the genes that involved in sex hormone metabolism may comprise risk for migraine, but the results of previous genetic association studies are conflicting. The aim of this study w...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:10.1007/s12041-016-0625-2

    authors: CoŞkun S,Yůcel Y,Çim A,Cengiz B,Oztuzcu S,Varol S,Özdemir HH,Uzar E

    更新日期:2016-03-01 00:00:00

  • Mining genes associated with furanocoumarin biosynthesis in an endangered medicinal plant, Glehnia littoralis.

    abstract::The endangered medicinal plant Glehnia littoralis is one of the important natural source of furanocoumarin, which has been used as mucolytic, antitussive, antitumour and antibacterial. However, the genetic information of furanocoumarin biosynthesis in G. littoralis is scarce at present. The objective of this study was...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:

    authors: Song J,Luo H,Xu Z,Zhang Y,Xin H,Zhu D,Zhu X,Liu M,Wang W,Ren H,Chen H,Gao T

    更新日期:2020-01-01 00:00:00

  • cDNA cloning, structural analysis, SNP detection and tissue expression profile of the IGF1 gene in Malabari and Attappady Black goats of India.

    abstract::Insulin-like growth factor 1 (IGF1) plays an important role in growth, reproduction, foetal development and cell proliferation. The present study was conducted to clone and sequence the full-length coding sequence of the caprine IGF1 gene from Attappady Black and Malabari breeds, two indigenous goat breeds of south In...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:10.1007/s12041-017-0762-2

    authors: Naicy T,Venkatachalapathy T,Aravindakshan T,Raghavan KC,Mini M,Shyama K

    更新日期:2017-06-01 00:00:00

  • Variants in the interleukin-1 alpha and beta genes, and the risk for periodontal disease in dogs.

    abstract::Elevated levels of interleukin-1 (IL-1) have been shown to amplify the inflammatory response against periodontopathogenic bacteria.In humans,polymorphisms in the IL1A and IL1B genes are the most well-studied genetic polymorphisms associated with periodontal disease (PD). In contrast to human, there is a lack of knowle...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:10.1007/s12041-015-0576-z

    authors: Albuquerque C,Morinha F,Magalhães J,Requicha J,Dias I,Guedes-Pinto H,Bastos E,Viegas C

    更新日期:2015-12-01 00:00:00

  • Novel alternatively spliced isoforms of MEF2A and their mRNA expression patterns in pigs.

    abstract::The present study aimed to identify the alternatively spliced isoforms of pig MEF2A gene and to determine theirmRNA expression patterns. Four alternatively spliced isoforms of pig MEF2A gene (i.e. MEF2A1, MEF2A2, MEF2A3 and MEF2A4) were cloned according to the results of transcriptome sequencing. The fifth to eighth e...

    journal_title:Journal of genetics

    pub_type: 杂志文章

    doi:

    authors: Guo XH,Zhang Q,Li M,Gao PF,Cao GQ,Cheng ZM,Zhang NF,Yu Le B,Liu JF,Liu XJ,Li BG

    更新日期:2018-09-01 00:00:00