An RNA Aptamer Capable of Forming a Hydrogel by Self-Assembly.

Abstract:

:Hydrogels are supramolecular assemblies with both solute transport properties like liquids and mechanical properties like elastomers. To date, every type of biomolecules except ribonucleic acid (RNA), is capable of forming a hydrogel. Here, we report an RNA that forms a hydrogel by self-assembly. This RNA is originally identified by systematic evolution of ligands by exponential enrichment (SELEX) to enhance the activity of α-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid (AMPA) receptors as a potential RNA drug for the treatment of cognitive disorders. The RNA hydrogel exhibits an elastic modulus plateau on the order of 102 Pa and shows dynamic RNA chain interactions with relaxation behaviors similar to living wormlike micellar solutions. Small-angle X-ray scattering and cryogenic electron microscopy characterization support the RNA network structures. By sequence mutation and rheological measurements, we reveal two key sequence motifs in the RNA responsible for intermolecular recognition and the formation of a polymer network by self-assembly.

journal_name

Biomacromolecules

journal_title

Biomacromolecules

authors

Huang Z,Kangovi GN,Wen W,Lee S,Niu L

doi

10.1021/acs.biomac.7b00314

subject

Has Abstract

pub_date

2017-07-10 00:00:00

pages

2056-2063

issue

7

eissn

1525-7797

issn

1526-4602

journal_volume

18

pub_type

杂志文章
  • Peptides at the Interface: Self-Assembly of Amphiphilic Designer Peptides and Their Membrane Interaction Propensity.

    abstract::Self-assembling amphiphilic designer peptides have been successfully applied as nanomaterials in biomedical applications. Understanding molecular interactions at the peptide-membrane interface is crucial, since interactions at this site often determine (in)compatibility. The present study aims to elucidate how model m...

    journal_title:Biomacromolecules

    pub_type: 杂志文章

    doi:10.1021/acs.biomac.6b01089

    authors: Kornmueller K,Lehofer B,Meindl C,Fröhlich E,Leitinger G,Amenitsch H,Prassl R

    更新日期:2016-11-14 00:00:00

  • Noncovalent liposome linkage and miniaturization of capsosomes for drug delivery.

    abstract::We report the synthesis of poly(methacrylic acid)-co-(oleyl methacrylate) with three different amounts of oleyl methacrylate and compare the ability of these polymers with that of poly(methacrylic acid)-co-(cholesteryl methacrylate) (PMA(c)) to noncovalently anchor liposomes to polymer layers. We subsequently assemble...

    journal_title:Biomacromolecules

    pub_type: 杂志文章

    doi:10.1021/bm101020e

    authors: Hosta-Rigau L,Chandrawati R,Saveriades E,Odermatt PD,Postma A,Ercole F,Breheney K,Wark KL,Städler B,Caruso F

    更新日期:2010-12-13 00:00:00

  • Fluorescence-tagged monolignols: synthesis, and application to studying in vitro lignification.

    abstract::Fluorescence-tagged coniferyl alcohols, coniferyl alcohol γ-coupled by ethylenediamine spacers to dimethylaminocoumarin or nitrobenzofuran fluorophores, were tested as photoprobes to study the oxidase-mediated polymerization of monolignols. The fluorescent coniferyl alcohol derivatives readily underwent peroxidase-cat...

    journal_title:Biomacromolecules

    pub_type: 杂志文章

    doi:10.1021/bm200136x

    authors: Tobimatsu Y,Davidson CL,Grabber JH,Ralph J

    更新日期:2011-05-09 00:00:00

  • Environmentally Benign Nanoantibiotics with a Built-in Deactivation Switch Responsive to Natural Habitats.

    abstract::The massive use of antibiotics in healthcare and agriculture has led to their artificial accumulation in natural habitats, which risks the structure and function of the microbial communities in ecosystems, threatens food and water security, and accelerates the development of resistome. Ideally, antibiotics should rema...

    journal_title:Biomacromolecules

    pub_type: 杂志文章

    doi:10.1021/acs.biomac.0c00163

    authors: Zheng W,Anzaldua M,Arora A,Jiang Y,McIntyre K,Doerfert M,Winter T,Mishra A,Ma H,Liang H

    更新日期:2020-06-08 00:00:00

  • Polarity and motility of large polymer-actin complexes.

    abstract::The polarity of polymer-actin complexes obtained by mixing F-actin with synthetic polymers carrying positive charges such as poly(L-lysine), x,y-ionene bromide polymers, and poly(N-[3-(dimethylamino)propyl]acrylamide) (PDMAPAA-Q) have been investigated. Actin complexes formed with poly(L-lysine) and PDMAPAA-Q, which c...

    journal_title:Biomacromolecules

    pub_type: 杂志文章

    doi:10.1021/bm0494038

    authors: Kakugo A,Shikinaka K,Takekawa N,Sugimoto S,Osada Y,Gong JP

    更新日期:2005-03-01 00:00:00

  • Microstructure and rheological behavior of pure and mixed pectin gels.

    abstract::The microstructure and the rheological properties of pure HM (high methoxyl) and LM (low methoxyl) pectin gels and of mixed HM/LM pectin gels have been investigated. Gel formation of either the HM or LM pectin, or both, was initiated in the mixed gels by varying the sucrose and Ca(2+) content. The microstructure was c...

    journal_title:Biomacromolecules

    pub_type: 杂志文章

    doi:10.1021/bm020044v

    authors: Löfgren C,Walkenström P,Hermansson AM

    更新日期:2002-11-01 00:00:00

  • Customizing the hydrolytic degradation rate of stereocomplex PLA through different PDLA architectures.

    abstract::Stereocomplexation of poly(L-lactide) (PLLA) with star shaped D-lactic acid (D-LA) oligomers with different architectures and end-groups clearly altered the degradation rate and affected the degradation product patterns. Altogether, nine materials were studied: standard PLLA and eight blends of PLLA with either 30 or ...

    journal_title:Biomacromolecules

    pub_type: 杂志文章

    doi:10.1021/bm300196h

    authors: Andersson SR,Hakkarainen M,Inkinen S,Södergård A,Albertsson AC

    更新日期:2012-04-09 00:00:00

  • Design and biophysical characterization of bioresponsive degradable poly(dimethylaminoethyl methacrylate) based polymers for in vitro DNA transfection.

    abstract::Water-soluble, degradable polymers based on poly(N,N-dimethylaminoethyl methacrylate) (PDMAEMA) with low cytotoxicity and good p-DNA transfection efficiency are highlighted in this article. To solve the nondegradability issue of PDMAEMA, new polymers based on DMAEMA and 5,6-benzo-2-methylene-1,3-dioxepane (BMDO) for g...

    journal_title:Biomacromolecules

    pub_type: 杂志文章

    doi:10.1021/bm2015174

    authors: Zhang Y,Zheng M,Kissel T,Agarwal S

    更新日期:2012-02-13 00:00:00

  • Synthesis, characterization, and preliminary biological study of poly(3-(tert-butoxycarbonyl)-N-vinyl-2-pyrrolidone).

    abstract::Poly(3-(tert-butoxycarbonyl)-N-vinyl-2-pyrrolidone) has been synthesized and characterized by gel permeation chromatography, Fourier transform infrared spectroscopy, NMR spectroscopy, and thermal analysis. The polymer is a chemically amplified photoresist. Arrays of lines with 25 microm width and 25 microm spacing wer...

    journal_title:Biomacromolecules

    pub_type: 杂志文章

    doi:10.1021/bm0256505

    authors: He W,Gonsalves KE,Pickett JH,Halberstadt C

    更新日期:2003-01-01 00:00:00

  • Synthesis and characterization of glycopolymer-polypeptide triblock copolymers.

    abstract::Glycopolymer-polypeptide triblock copolymers of the structure, poly(l-alanine)-b-poly(2-acryloyloxyethyl-lactoside)-b-poly(l-alanine) (AGA), have been synthesized by sequential atom transfer radical polymerization (ATRP) and ring-opening polymerization (ROP). Controlled free radical polymerization of 2-O-acryloyl-oxye...

    journal_title:Biomacromolecules

    pub_type: 杂志文章

    doi:10.1021/bm0343500

    authors: Dong CM,Sun XL,Faucher KM,Apkarian RP,Chaikof EL

    更新日期:2004-01-01 00:00:00

  • Accounting for Substrate Interactions in the Measurement of the Dimensions of Cellulose Nanofibrils.

    abstract::Mechanically fibrillated cellulose nanofibrils (CNFs) have attracted special attention as building blocks for the development of advanced materials and composites. A correlation exists between CNF morphology and the properties of the materials they form. However, this correlation is often evaluated indirectly by proce...

    journal_title:Biomacromolecules

    pub_type: 杂志文章

    doi:10.1021/acs.biomac.9b00432

    authors: Mattos BD,Tardy BL,Rojas OJ

    更新日期:2019-07-08 00:00:00

  • Structural and rheological properties of methacrylamide modified gelatin hydrogels.

    abstract::Dynamic shear oscillation measurements at small strain were used to characterize the viscoelastic properties and related differences in the molecular structure of hydrogels based on gelatin methacrylamide. Gelatin was derivatized with methacrylamide side groups and was subsequently cross-linked by radical polymerizati...

    journal_title:Biomacromolecules

    pub_type: 杂志文章

    doi:10.1021/bm990017d

    authors: Van Den Bulcke AI,Bogdanov B,De Rooze N,Schacht EH,Cornelissen M,Berghmans H

    更新日期:2000-04-01 00:00:00

  • Aliphatic polyesters: great degradable polymers that cannot do everything.

    abstract::Nowadays the open and the patent literatures propose a large number of polymers whose main chains can be degraded usefully. Among these degradable polymers, aliphatic polyester-based polymeric structures are receiving special attention because they are all more or less sensitive to hydrolytic degradation, a feature of...

    journal_title:Biomacromolecules

    pub_type: 杂志文章,评审

    doi:10.1021/bm0494702

    authors: Vert M

    更新日期:2005-03-01 00:00:00

  • Multifunctional Polymeric Micelles with Amplified Fenton Reaction for Tumor Ablation.

    abstract::Relative to normal cells, tumor cells lack adequate capability of reactive oxygen scavenging. Thus, tumor cells can be selectively killed by increasing the concentration of reactive oxygen species in tumor tissue. In this report, we construct an integrated multifunctional polymeric nanoparticle which can selectively i...

    journal_title:Biomacromolecules

    pub_type: 杂志文章

    doi:10.1021/acs.biomac.7b01777

    authors: Wang Y,Yin W,Ke W,Chen W,He C,Ge Z

    更新日期:2018-06-11 00:00:00

  • Amino acid grafted chitosan for high performance gene delivery: comparison of amino acid hydrophobicity on vector and polyplex characteristics.

    abstract::To develop a safe, effective, and biocompatible gene delivery vector, a series of hydrophobic amino acid grafted chitosan (AGC) derivatives were synthesized by carbodiimide mediated coupling reaction. Chemical characterization of AGC polymers was performed by NMR and elemental analysis. AGC polymers demonstrated excel...

    journal_title:Biomacromolecules

    pub_type: 杂志文章

    doi:10.1021/bm301720g

    authors: Layek B,Singh J

    更新日期:2013-02-11 00:00:00

  • Sulfated glycosaminoglycans exploit the conformational plasticity of bone morphogenetic protein-2 (BMP-2) and alter the interaction profile with its receptor.

    abstract::Sulfated glycosaminoglycans (GAGs) can direct cellular processes by interacting with proteins of the extracellular matrix (ECM). In this study we characterize the interaction profiles of chemically sulfated hyaluronan (HA) and chondroitin sulfate (CS) derivatives with bone morphogenetic protein-2 (BMP-2) and investiga...

    journal_title:Biomacromolecules

    pub_type: 杂志文章

    doi:10.1021/bm5006855

    authors: Hintze V,Samsonov SA,Anselmi M,Moeller S,Becher J,Schnabelrauch M,Scharnweber D,Pisabarro MT

    更新日期:2014-08-11 00:00:00

  • Functionalization of poly(oligo(ethylene glycol) methacrylate) films on gold and Si/SiO2 for immobilization of proteins and cells: SPR and QCM studies.

    abstract::Thin films of a biocompatible and nonbiofouling poly(oligo(ethylene glycol) methacrylate) ( pOEGMA) with various thicknesses were formed on gold and Si/SiO 2 substrates by a combination of the formation of self-assembled monolayers (SAMs) terminating in bromoester-an initiator of atom transfer radical polymerization (...

    journal_title:Biomacromolecules

    pub_type: 杂志文章

    doi:10.1021/bm7009043

    authors: Lee BS,Chi YS,Lee KB,Kim YG,Choi IS

    更新日期:2007-12-01 00:00:00

  • Phase behavior of elastin-like synthetic recombinamers in deep eutectic solvents.

    abstract::Deep eutectic solvents promoted the stabilization of the collapsed state of elastin-like recombinamers - and the subsequent formation of aggregates - upon the loss of the structural water molecules involved in hydrophobic hydration. Cryo-etch scanning electron microscopy allowed the observation of these aggregates i...

    journal_title:Biomacromolecules

    pub_type: 杂志文章

    doi:10.1021/bm300200e

    authors: Nardecchia S,Gutiérrez MC,Ferrer ML,Alonso M,López IM,Rodríguez-Cabello JC,del Monte F

    更新日期:2012-07-09 00:00:00

  • Construction and assembly of chimeric DNA: oligonucleotide hybrid molecules composed of parallel or antiparallel duplexes and tetrameric i-motifs.

    abstract::Chimeric DNA containing parallel (ps) and antiparallel (aps) duplex elements as well as poly-dC tracts were designed and synthesized. Oligonucleotide duplexes with ps chain orientation containing reverse Watson-Crick dA-dT base pairs and short d(C)2 tails are stabilized under slightly acidic conditions by hemiprotonat...

    journal_title:Biomacromolecules

    pub_type: 杂志文章

    doi:10.1021/bm301471d

    authors: Mei H,Budow S,Seela F

    更新日期:2012-12-10 00:00:00

  • Controlling Enzymatic Polymerization from Surfaces with Switchable Bioaffinity.

    abstract::The affinity of surfaces toward proteins is found to be a key parameter to govern the synthesis of polymer brushes by surface-initiated biocatalytic atom transfer radical polymerization (SI-bioATRP). While the "ATRPase" hemoglobin (Hb) stimulates only a relatively slow growth of protein repellent brushes, the synthesi...

    journal_title:Biomacromolecules

    pub_type: 杂志文章

    doi:10.1021/acs.biomac.7b01313

    authors: Divandari M,Pollard J,Dehghani E,Bruns N,Benetti EM

    更新日期:2017-12-11 00:00:00

  • Heparin as a Bundler in a Self-Assembled Fibrous Network of Functionalized Protein-Based Polymers.

    abstract::Nature shows excellent control over the mechanics of fibrous hydrogels by assembling protein fibers into bundles of well-defined dimensions. Yet, obtaining artificial materials displaying controlled bundling remains a challenge. Here, we developed genetically engineered protein-based polymers functionalized with hepar...

    journal_title:Biomacromolecules

    pub_type: 杂志文章

    doi:10.1021/acs.biomac.6b00276

    authors: Włodarczyk-Biegun MK,Slingerland CJ,Werten MW,van Hees IA,de Wolf FA,de Vries R,Stuart MA,Kamperman M

    更新日期:2016-06-13 00:00:00

  • Oriented immobilization of proteins on hydroxyapatite surface using bifunctional bisphosphonates as linkers.

    abstract::Oriented immobilization of proteins is an important step in creating protein-based functional materials. In this study, a method was developed to orient proteins on hydroxyapatite (HA) surfaces, a widely used bone implant material, to improve protein bioactivity by employing enhanced green fluorescent protein (EGFP) a...

    journal_title:Biomacromolecules

    pub_type: 杂志文章

    doi:10.1021/bm201865r

    authors: Yewle JN,Wei Y,Puleo DA,Daunert S,Bachas LG

    更新日期:2012-06-11 00:00:00

  • Polypeptide-based aerosol nanoparticles: self-assembly and control of conformation by solvent and thermal annealing.

    abstract::Nanoconfined self-assemblies within aerosol nanoparticles and control of the secondary structures are shown here upon ionically complexing poly(L-lysine) (PLL) with dodecylbenzenesulfonic acid (DBSA) surfactant and using solvents chloroform, 1-propanol, or dimethylformamide. Different solvent volatilities and drying t...

    journal_title:Biomacromolecules

    pub_type: 杂志文章

    doi:10.1021/bm500704e

    authors: Rahikkala A,Junnila S,Vartiainen V,Ruokolainen J,Ikkala O,Kauppinen E,Raula J

    更新日期:2014-07-14 00:00:00

  • Solid-solid interface adsorption of proteins and enzymes in nanophase-separated amphiphilic conetworks.

    abstract::Amphiphilic polymer conetworks (APCNs) are materials with a very large interface between their hydrophilic and hydrophobic phases due to their nanophase-separated morphologies. Proteins were found to enrich in APCNs by up to 2 orders of magnitude when incubated in aqueous protein solutions, raising the question of the...

    journal_title:Biomacromolecules

    pub_type: 杂志文章

    doi:10.1021/bm1015877

    authors: Dech S,Cramer T,Ladisch R,Bruns N,Tiller JC

    更新日期:2011-05-09 00:00:00

  • The unique ribbon morphology of the major ampullate silk of spiders from the genus Loxosceles (recluse spiders).

    abstract::The morphology of silk produced by recluse spiders (Loxosceles arizonica) was investigated by scanning electron microscopy, atomic force microscopy, and transmission electron microscopy. This silk consisted entirely of very long, thin ribbons of width 2-4 microm and thicknesses of no more than 40 nm. The correspondenc...

    journal_title:Biomacromolecules

    pub_type: 杂志文章

    doi:10.1021/bm010108m

    authors: Coddington JA,Chanzy HD,Jackson CL,Raty G,Gardner KH

    更新日期:2002-01-01 00:00:00

  • A study of the chain stiffness and extension of alginates, in vitro epimerized alginates, and periodate-oxidized alginates using size-exclusion chromatography combined with light scattering and viscosity detectors.

    abstract::A series of alginates isolated from the stem and leaf of a brown algae (Laminaria hyperborea), bacterial mannuronan, in vitro epimerized mannuronans, and periodate oxidized alginates were analyzed by size-exclusion chromatography (SEC) combined with online multiangle laser light scattering (MALS) and viscometry (colle...

    journal_title:Biomacromolecules

    pub_type: 杂志文章

    doi:10.1021/bm060099n

    authors: Vold IM,Kristiansen KA,Christensen BE

    更新日期:2006-07-01 00:00:00

  • Minimal Reconstitution of Membranous Web Induced by a Vesicle-Peptide Sol-Gel Transition.

    abstract::Positive strand RNA viruses replicate in specialized niches called membranous web within the cytoplasm of host cells. These virus replication organelles sequester viral proteins, RNA, and a variety of host factors within a fluid, amorphous matrix of clusters of endoplasmic reticulum (ER) derived vesicles. They are tho...

    journal_title:Biomacromolecules

    pub_type: 杂志文章

    doi:10.1021/acs.biomac.9b00081

    authors: Ho JCS,Steininger C,Hiew SH,Kim MC,Reimhult E,Miserez A,Cho N,Parikh AN,Liedberg B

    更新日期:2019-04-08 00:00:00

  • Structure-function relationship in the antifreeze activity of synthetic alanine-lysine antifreeze polypeptides.

    abstract::Recently antifreeze proteins (AFP) have been the subject of many structure-function relationship studies regarding their antifreeze activity. Attempts have been made to elucidate the structure-function relationship by various amino acid substitutions, but to our knowledge there has been no successful from first princi...

    journal_title:Biomacromolecules

    pub_type: 杂志文章

    doi:10.1021/bm000004w

    authors: Wierzbicki A,Knight CA,Rutland TJ,Muccio DD,Pybus BS,Sikes CS

    更新日期:2000-07-01 00:00:00

  • Design and synthesis of water-soluble glycopolymers bearing breast tumor marker and enhanced lipophilicity for solid-phase assays.

    abstract::Water-soluble T-antigen containing glycopolymers [Gal beta(1,3)-GalNAc alpha) having a high degree of lipophilicity were synthesized from poly[N-(acryloxy)succinimide] (6-10) by amidation with an amine-ending T-antigen derivative (3) and various amines of increasing alkyl chain length (ammonia and methyl-, ethyl-, and...

    journal_title:Biomacromolecules

    pub_type: 杂志文章

    doi:10.1021/bm005593k

    authors: Baek MG,Roy R

    更新日期:2000-01-01 00:00:00

  • Reversibly cross-linked polyplexes enable cancer-targeted gene delivery via self-promoted DNA release and self-diminished toxicity.

    abstract::Polycations often suffer from the irreconcilable inconsistency between transfection efficiency and toxicity. Polymers with high molecular weight (MW) and cationic charge feature potent gene delivery capabilities, while in the meantime suffer from strong chemotoxicity, restricted intracellular DNA release, and low stab...

    journal_title:Biomacromolecules

    pub_type: 杂志文章

    doi:10.1021/acs.biomac.5b00180

    authors: He H,Bai Y,Wang J,Deng Q,Zhu L,Meng F,Zhong Z,Yin L

    更新日期:2015-04-13 00:00:00