Tumour hypoxia causes DNA hypermethylation by reducing TET activity.

Abstract:

:Hypermethylation of the promoters of tumour suppressor genes represses transcription of these genes, conferring growth advantages to cancer cells. How these changes arise is poorly understood. Here we show that the activity of oxygen-dependent ten-eleven translocation (TET) enzymes is reduced by tumour hypoxia in human and mouse cells. TET enzymes catalyse DNA demethylation through 5-methylcytosine oxidation. This reduction in activity occurs independently of hypoxia-associated alterations in TET expression, proliferation, metabolism, hypoxia-inducible factor activity or reactive oxygen species, and depends directly on oxygen shortage. Hypoxia-induced loss of TET activity increases hypermethylation at gene promoters in vitro. In patients, tumour suppressor gene promoters are markedly more methylated in hypoxic tumour tissue, independent of proliferation, stromal cell infiltration and tumour characteristics. Our data suggest that up to half of hypermethylation events are due to hypoxia, with these events conferring a selective advantage. Accordingly, increased hypoxia in mouse breast tumours increases hypermethylation, while restoration of tumour oxygenation abrogates this effect. Tumour hypoxia therefore acts as a novel regulator of DNA methylation.

journal_name

Nature

journal_title

Nature

authors

Thienpont B,Steinbacher J,Zhao H,D'Anna F,Kuchnio A,Ploumakis A,Ghesquière B,Van Dyck L,Boeckx B,Schoonjans L,Hermans E,Amant F,Kristensen VN,Peng Koh K,Mazzone M,Coleman M,Carell T,Carmeliet P,Lambrechts D

doi

10.1038/nature19081

subject

Has Abstract

pub_date

2016-09-01 00:00:00

pages

63-68

issue

7618

eissn

0028-0836

issn

1476-4687

journal_volume

537

pub_type

杂志文章

相关文献

NATURE文献大全
  • Mutations in Cu/Zn superoxide dismutase gene are associated with familial amyotrophic lateral sclerosis.

    abstract::Amyotrophic lateral sclerosis (ALS) is a degenerative disorder of motor neurons in the cortex, brainstem and spinal cord. Its cause is unknown and it is uniformly fatal, typically within five years. About 10% of cases are inherited as an autosomal dominant trait, with high penetrance after the sixth decade. In most in...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/362059a0

    authors: Rosen DR,Siddique T,Patterson D,Figlewicz DA,Sapp P,Hentati A,Donaldson D,Goto J,O'Regan JP,Deng HX

    更新日期:1993-03-04 00:00:00

  • Molecular modifiers reveal a mechanism of pathological crystal growth inhibition.

    abstract::Crystalline materials are crucial to the function of living organisms, in the shells of molluscs, the matrix of bone, the teeth of sea urchins, and the exoskeletons of coccoliths. However, pathological biomineralization can be an undesirable crystallization process associated with human diseases. The crystal growth of...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature19062

    authors: Chung J,Granja I,Taylor MG,Mpourmpakis G,Asplin JR,Rimer JD

    更新日期:2016-08-25 00:00:00

  • The mammalian sodium channel BNC1 is required for normal touch sensation.

    abstract::Of the vertebrate senses, touch is the least understood at the molecular level The ion channels that form the core of the mechanosensory complex and confer touch sensitivity remain unknown. However, the similarity of the brain sodium channel 1 (BNC1) to nematode proteins involved in mechanotransduction indicated that ...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/35039512

    authors: Price MP,Lewin GR,McIlwrath SL,Cheng C,Xie J,Heppenstall PA,Stucky CL,Mannsfeldt AG,Brennan TJ,Drummond HA,Qiao J,Benson CJ,Tarr DE,Hrstka RF,Yang B,Williamson RA,Welsh MJ

    更新日期:2000-10-26 00:00:00

  • Author Correction: The evolutionary history of lethal metastatic prostate cancer.

    abstract::An amendment to this paper has been published and can be accessed via a link at the top of the paper. ...

    journal_title:Nature

    pub_type: 已发布勘误

    doi:10.1038/s41586-020-2581-5

    authors: Gundem G,Van Loo P,Kremeyer B,Alexandrov LB,Tubio JMC,Papaemmanuil E,Brewer DS,Kallio HML,Hägnäs G,Annala M,Kivinummi K,Goody V,Latimer C,O'Meara S,Dawson KJ,Isaacs W,Emmert-Buck MR,Nykter M,Foster C,Kote-Jarai Z,

    更新日期:2020-08-01 00:00:00

  • Identification of the electron transfers in cytochrome oxidase that are coupled to proton-pumping.

    abstract::Mitochondrial cytochrome oxidase is a functionally complex, membrane-bound respiratory enzyme which catalyses both the reduction of O2 to water and proton-pumping. During respiration, an exogenous donor, cytochrome c, donates four electrons to O2 bound at the bimetallic haem alpha 3 Fe-Cu centre within the enzyme. The...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/338776a0

    authors: Wikström M

    更新日期:1989-04-27 00:00:00

  • Peierls distortion as a route to high thermoelectric performance in In(4)Se(3-delta) crystals.

    abstract::Thermoelectric energy harvesting-the transformation of waste heat into useful electricity-is of great interest for energy sustainability. The main obstacle is the low thermoelectric efficiency of materials for converting heat to electricity, quantified by the thermoelectric figure of merit, ZT. The best available n-ty...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature08088

    authors: Rhyee JS,Lee KH,Lee SM,Cho E,Kim SI,Lee E,Kwon YS,Shim JH,Kotliar G

    更新日期:2009-06-18 00:00:00

  • Publisher Correction: Programmable base editing of A•T to G•C in genomic DNA without DNA cleavage.

    abstract::In this Article, owing to an error during the production process, in Fig. 1a, the dark blue and light blue wedges were incorrectly labelled as 'G•C → T•A' and 'G•C → A•T', instead of 'C•G → T•A' and 'C•G → A•T', respectively. Fig. 1 has been corrected online. ...

    journal_title:Nature

    pub_type: 杂志文章,已发布勘误

    doi:10.1038/s41586-018-0070-x

    authors: Gaudelli NM,Komor AC,Rees HA,Packer MS,Badran AH,Bryson DI,Liu DR

    更新日期:2018-07-01 00:00:00

  • Erratum: Genetic effects on gene expression across human tissues.

    abstract::This corrects the article DOI: 10.1038/nature24277. ...

    journal_title:Nature

    pub_type: 杂志文章,已发布勘误

    doi:10.1038/nature25160

    authors: GTEx Consortium.

    更新日期:2018-01-25 00:00:00

  • PTEN maintains haematopoietic stem cells and acts in lineage choice and leukaemia prevention.

    abstract::Haematopoietic stem cells (HSCs) must achieve a balance between quiescence and activation that fulfils immediate demands for haematopoiesis without compromising long-term stem cell maintenance, yet little is known about the molecular events governing this balance. Phosphatase and tensin homologue (PTEN) functions as a...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature04747

    authors: Zhang J,Grindley JC,Yin T,Jayasinghe S,He XC,Ross JT,Haug JS,Rupp D,Porter-Westpfahl KS,Wiedemann LM,Wu H,Li L

    更新日期:2006-05-25 00:00:00

  • Phosphorylation of histone H3T6 by PKCbeta(I) controls demethylation at histone H3K4.

    abstract::Demethylation at distinct lysine residues in histone H3 by lysine-specific demethylase 1 (LSD1) causes either gene repression or activation. As a component of co-repressor complexes, LSD1 contributes to target gene repression by removing mono- and dimethyl marks from lysine 4 of histone H3 (H3K4). In contrast, during ...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature08839

    authors: Metzger E,Imhof A,Patel D,Kahl P,Hoffmeyer K,Friedrichs N,Müller JM,Greschik H,Kirfel J,Ji S,Kunowska N,Beisenherz-Huss C,Günther T,Buettner R,Schüle R

    更新日期:2010-04-01 00:00:00

  • Cloning and structure of a yeast gene encoding a general transcription initiation factor TFIID that binds to the TATA box.

    abstract::The TATA sequence-binding factor TFIID plays a central role both in promoter activation by RNA polymerase II and other common initiation factors, and in promoter regulation by gene-specific factors. The sequence of yeast TFIID, which seems to be encoded by a single gene, contains interesting structural motifs that are...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/341299a0

    authors: Horikoshi M,Wang CK,Fujii H,Cromlish JA,Weil PA,Roeder RG

    更新日期:1989-09-28 00:00:00

  • Greenland supraglacial lake drainages triggered by hydrologically induced basal slip.

    abstract::Water-driven fracture propagation beneath supraglacial lakes rapidly transports large volumes of surface meltwater to the base of the Greenland Ice Sheet. These drainage events drive transient ice-sheet acceleration and establish conduits for additional surface-to-bed meltwater transport for the remainder of the melt ...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature14480

    authors: Stevens LA,Behn MD,McGuire JJ,Das SB,Joughin I,Herring T,Shean DE,King MA

    更新日期:2015-06-04 00:00:00

  • Limb alterations in brachypodism mice due to mutations in a new member of the TGF beta-superfamily.

    abstract::The mutation brachypodism (bp) alters the length and number of bones in the limbs of mice but spares the axial skeleton. It illustrates the importance of specific genes in controlling the morphogenesis of individual skeletal elements in the tetrapod limb. We now report the isolation of three new members of the transfo...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/368639a0

    authors: Storm EE,Huynh TV,Copeland NG,Jenkins NA,Kingsley DM,Lee SJ

    更新日期:1994-04-14 00:00:00

  • Macrophage migration inhibitory factor stimulates AMP-activated protein kinase in the ischaemic heart.

    abstract::Understanding cellular response to environmental stress has broad implications for human disease. AMP-activated protein kinase (AMPK) orchestrates the regulation of energy-generating and -consuming pathways, and protects the heart against ischaemic injury and apoptosis. A role for circulating hormones such as adiponec...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature06504

    authors: Miller EJ,Li J,Leng L,McDonald C,Atsumi T,Bucala R,Young LH

    更新日期:2008-01-31 00:00:00

  • Recent Northern Hemisphere stratospheric HCl increase due to atmospheric circulation changes.

    abstract::The abundance of chlorine in the Earth's atmosphere increased considerably during the 1970s to 1990s, following large emissions of anthropogenic long-lived chlorine-containing source gases, notably the chlorofluorocarbons. The chemical inertness of chlorofluorocarbons allows their transport and mixing throughout the t...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature13857

    authors: Mahieu E,Chipperfield MP,Notholt J,Reddmann T,Anderson J,Bernath PF,Blumenstock T,Coffey MT,Dhomse SS,Feng W,Franco B,Froidevaux L,Griffith DW,Hannigan JW,Hase F,Hossaini R,Jones NB,Morino I,Murata I,Nakajima H,Pa

    更新日期:2014-11-06 00:00:00

  • Receptor binding redefined by a structural switch in a mutant human insulin.

    abstract::Crystal structures of insulin have been determined in various distinct forms, the relevance of which to receptor recognition has long been the subject of speculation. Recently the crystal structure of an inactive insulin analogue has been determined and, surprisingly, found to have a conformation identical to native i...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/354238a0

    authors: Hua QX,Shoelson SE,Kochoyan M,Weiss MA

    更新日期:1991-11-21 00:00:00

  • Evolution of ageing.

    abstract::An evolutionary view of ageing suggests that mortality may be due to an energy-saving strategy of reduced error regulation in somatic cells. This supports Orgel's 'error catastrophe' hypothesis and offers a new basis for the study of normal and abnormal ageing syndromes and of apparently immortal transformed cell line...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/270301a0

    authors: Kirkwood TB

    更新日期:1977-11-24 00:00:00

  • Interleukin-4 mediates CD8 induction on human CD4+ T-cell clones.

    abstract::CD4 and CD8 antigens are simultaneously expressed on most of the cortical thymocytes, that weakly express the T-cell antigen receptor(TCR)/CD3 complex. Mature peripheral T cells, however, strongly express the TCR complex and are positive for either CD4 or CD8. Nevertheless, a small percentage of peripheral CD3+ T cell...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/335642a0

    authors: Paliard X,Malefijt RW,de Vries JE,Spits H

    更新日期:1988-10-13 00:00:00

  • A Crohn's disease variant in Atg16l1 enhances its degradation by caspase 3.

    abstract::Crohn's disease is a debilitating inflammatory bowel disease (IBD) that can involve the entire digestive tract. A single-nucleotide polymorphism (SNP) encoding a missense variant in the autophagy gene ATG16L1 (rs2241880, Thr300Ala) is strongly associated with the incidence of Crohn's disease. Numerous studies have dem...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature13044

    authors: Murthy A,Li Y,Peng I,Reichelt M,Katakam AK,Noubade R,Roose-Girma M,DeVoss J,Diehl L,Graham RR,van Lookeren Campagne M

    更新日期:2014-02-27 00:00:00

  • Origin of the orbital architecture of the giant planets of the Solar System.

    abstract::Planetary formation theories suggest that the giant planets formed on circular and coplanar orbits. The eccentricities of Jupiter, Saturn and Uranus, however, reach values of 6 per cent, 9 per cent and 8 per cent, respectively. In addition, the inclinations of the orbital planes of Saturn, Uranus and Neptune take maxi...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature03539

    authors: Tsiganis K,Gomes R,Morbidelli A,Levison HF

    更新日期:2005-05-26 00:00:00

  • The neuropeptide Pth2 dynamically senses others via mechanosensation.

    abstract::Species that depend on membership in social groups for survival exhibit changes in neuronal gene expression and behaviour when they face restricted social interactions or isolation1-3. Here we show that, across the lifespan of zebrafish (Danio rerio), social isolation specifically decreased the level of transcription ...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/s41586-020-2988-z

    authors: Anneser L,Alcantara IC,Gemmer A,Mirkes K,Ryu S,Schuman EM

    更新日期:2020-12-01 00:00:00

  • Neurons that regulate mouse torpor.

    abstract::The advent of endothermy, which is achieved through the continuous homeostatic regulation of body temperature and metabolism1,2, is a defining feature of mammalian and avian evolution. However, when challenged by food deprivation or harsh environmental conditions, many mammalian species initiate adaptive energy-conser...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/s41586-020-2387-5

    authors: Hrvatin S,Sun S,Wilcox OF,Yao H,Lavin-Peter AJ,Cicconet M,Assad EG,Palmer ME,Aronson S,Banks AS,Griffith EC,Greenberg ME

    更新日期:2020-07-01 00:00:00

  • Dynamic fracture by large extraterrestrial impacts as the origin of shatter cones.

    abstract::A large impact by a comet or meteorite releases an enormous amount of energy, which evaporates, melts and fractures the surrounding rocks. Distinctive features of such impacts are 'shatter cones', deformed rocks characterized by hierarchical striated features. Although such features have been used for decades as unequ...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature00903

    authors: Sagy A,Reches Z,Fineberg J

    更新日期:2002-07-18 00:00:00

  • Evidence against dust-mediated control of glacial-interglacial changes in atmospheric CO2.

    abstract::The low concentration of atmospheric CO2 inferred to have been present during glacial periods is thought to have been partly caused by an increased supply of iron-bearing dust to the ocean surface. This is supported by a recent model that attributes half of the CO2 reduction during past glacial stages to iron-stimulat...

    journal_title:Nature

    pub_type: 历史文章,杂志文章

    doi:10.1038/35075543

    authors: Maher BA,Dennis PF

    更新日期:2001-05-10 00:00:00

  • A route to high surface area, porosity and inclusion of large molecules in crystals.

    abstract::One of the outstanding challenges in the field of porous materials is the design and synthesis of chemical structures with exceptionally high surface areas. Such materials are of critical importance to many applications involving catalysis, separation and gas storage. The claim for the highest surface area of a disord...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature02311

    authors: Chae HK,Siberio-Pérez DY,Kim J,Go Y,Eddaoudi M,Matzger AJ,O'Keeffe M,Yaghi OM

    更新日期:2004-02-05 00:00:00

  • Resolution of recombination intermediates generated during yeast mating type switching.

    abstract::Interchromosomal gene conversion between alleles has been shown in yeast frequently to be associated with the recombination of flanking genetic markers. Although this also holds true for gene conversion between two alleles of the yeast mating-type (MAT) locus, initiated by the homothallic switching system, we find no ...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/310744a0

    authors: Klar AJ,Strathern JN

    更新日期:1984-08-30 00:00:00

  • Author Correction: Anti-tumour immunity controlled through mRNA m6A methylation and YTHDF1 in dendritic cells.

    abstract::In this Letter, a citation to 'Fig. 1e' has been corrected to 'Fig. 1d' in the sentence starting "By contrast, the anti-tumour response…". This has been corrected online. ...

    journal_title:Nature

    pub_type: 已发布勘误

    doi:10.1038/s41586-019-1046-1

    authors: Han D,Liu J,Chen C,Dong L,Liu Y,Chang R,Huang X,Liu Y,Wang J,Dougherty U,Bissonnette MB,Shen B,Weichselbaum RR,Xu MM,He C

    更新日期:2019-04-01 00:00:00

  • A simple gadget nudges people to save energy in the shower.

    abstract:: ...

    journal_title:Nature

    pub_type: 新闻

    doi:10.1038/d41586-018-07471-1

    authors:

    更新日期:2018-11-01 00:00:00

  • Ecosystem stability and compensatory effects in the Inner Mongolia grassland.

    abstract::Numerous studies have suggested that biodiversity reduces variability in ecosystem productivity through compensatory effects; that is, a species increases in its abundance in response to the reduction of another in a fluctuating environment. But this view has been challenged on several grounds. Because most studies ha...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature02850

    authors: Bai Y,Han X,Wu J,Chen Z,Li L

    更新日期:2004-09-09 00:00:00

  • Maximized electron interactions at the magic angle in twisted bilayer graphene.

    abstract::The electronic properties of heterostructures of atomically thin van der Waals crystals can be modified substantially by moiré superlattice potentials from an interlayer twist between crystals1,2. Moiré tuning of the band structure has led to the recent discovery of superconductivity3,4 and correlated insulating phase...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/s41586-019-1431-9

    authors: Kerelsky A,McGilly LJ,Kennes DM,Xian L,Yankowitz M,Chen S,Watanabe K,Taniguchi T,Hone J,Dean C,Rubio A,Pasupathy AN

    更新日期:2019-08-01 00:00:00