CT-Finder: A Web Service for CRISPR Optimal Target Prediction and Visualization.

Abstract:

:The CRISPR system holds much promise for successful genome engineering, but therapeutic, industrial, and research applications will place high demand on improving the specificity and efficiency of this tool. CT-Finder (http://bioinfolab.miamioh.edu/ct-finder) is a web service to help users design guide RNAs (gRNAs) optimized for specificity. CT-Finder accommodates the original single-gRNA Cas9 system and two specificity-enhancing paired-gRNA systems: Cas9 D10A nickases (Cas9n) and dimeric RNA-guided FokI nucleases (RFNs). Optimal target candidates can be chosen based on the minimization of predicted off-target effects. Graphical visualization of on-target and off-target sites in the genome is provided for target validation. Major model organisms are covered by this web service.

journal_name

Sci Rep

journal_title

Scientific reports

authors

Zhu H,Misel L,Graham M,Robinson ML,Liang C

doi

10.1038/srep25516

subject

Has Abstract

pub_date

2016-05-23 00:00:00

pages

25516

issn

2045-2322

pii

srep25516

journal_volume

6

pub_type

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