Abstract:
:The use of phages to control and reduce numbers of unwanted bacteria can be traced back to the early 1900s, when phages were explored as a tool to treat infections before the wide scale use of antibiotics. Recently, phage therapy has received renewed interest as a method to treat multiresistant bacteria. Phages are also widely used in the food industry to prevent the growth of certain bacteria in foods, and are currently being explored as a tool for use in bioremediation and wastewater treatment. Despite the large body of biological research on phages, relatively little attention has been given to computational modeling of the population dynamics of phage and bacterial interactions. The earliest model was described by Campbell in the 1960s. Subsequent modifications to this model include partial or complete resistance, multiple phage binding sites, and spatial heterogeneity. This review provides a general introduction to modeling of the population dynamics of bacteria and phage. The review introduces the basic model and relevant concepts and evaluates more complex variations of the basic model published to date, including a model of disease epidemics caused by infectious bacteria. Finally, the shortcomings and potential ways to improve the models are discussed.
journal_name
Crit Rev Microbioljournal_title
Critical reviews in microbiologyauthors
Krysiak-Baltyn K,Martin GJ,Stickland AD,Scales PJ,Gras SLdoi
10.3109/1040841X.2015.1114466subject
Has Abstractpub_date
2016-11-01 00:00:00pages
942-68issue
6eissn
1040-841Xissn
1549-7828journal_volume
42pub_type
杂志文章,评审abstract::Enteroaggregative Escherichia coli heat-stable enterotoxin 1 (EAST1) is a small protein that was first detected more than a decade ago in an enteroaggregative E. coli (EAEC) strain isolated from the stools of a diarrheic child. The EAST1 gene, astA, is not solely present in EAEC, but also in other categories of diarrh...
journal_title:Critical reviews in microbiology
pub_type: 杂志文章,评审
doi:10.1080/1040-840291046687
更新日期:2002-01-01 00:00:00
abstract::Cyclic AMP is a ubiquitous messenger that integrates many processes of the cell. Diverse families of adenylate cyclases and phosphodiesterases stringently regulate the intracellular concentration of cAMP. Any alteration in the cytosolic concentration of cAMP has a profound effect on the various processes of the cell. ...
journal_title:Critical reviews in microbiology
pub_type: 杂志文章,评审
doi:10.1080/10408410490468795
更新日期:2004-01-01 00:00:00
abstract::Escherichia coli can commonly be found, either as a commensal, probiotic or a pathogen, in the human gastrointestinal (GI) tract. Biofilm formation and its regulation is surprisingly variable, although distinct regulatory pattern of red, dry and rough (rdar) biofilm formation arise in certain pathovars and even clones...
journal_title:Critical reviews in microbiology
pub_type: 杂志文章,评审
doi:10.1080/1040841X.2017.1303660
更新日期:2018-02-01 00:00:00
abstract::The immune system is well-equipped with sensors that detect invading pathogens and dictate subsequent immune responses for clearing the infections. One such class of sensor is the toll-like receptor (TLR), that can sense diverse molecules of pathogen origin such as proteins, lipids, carbohydrate, DNA, RNA, and trigger...
journal_title:Critical reviews in microbiology
pub_type: 杂志文章,评审
doi:10.1080/1040841X.2019.1608904
更新日期:2019-05-01 00:00:00
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journal_title:Critical reviews in microbiology
pub_type: 杂志文章,评审
doi:10.3109/1040841X.2013.879849
更新日期:2016-01-01 00:00:00
abstract::Urease activity is a physiological function of many bacteria that enables these organisms to utilize urea as a source of nitrogen. The association of ureolytic bacteria with human or animal hosts varies widely from a commensal relationship as demonstrated with skin microflora, a symbiotic relationship in the gastroint...
journal_title:Critical reviews in microbiology
pub_type: 杂志文章,评审
doi:10.3109/10408418809104467
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journal_title:Critical reviews in microbiology
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doi:10.1080/1040841X.2019.1593101
更新日期:2019-05-01 00:00:00
abstract::Eugenol is a hydroxyphenyl propene, naturally occurring in the essential oils of several plants belonging to the Lamiaceae, Lauraceae, Myrtaceae, and Myristicaceae families. It is one of the major constituents of clove (Syzygium aromaticum (L.) Merr. & L.M. Perry, Myrtaceae) oil and is largely used in both foods and c...
journal_title:Critical reviews in microbiology
pub_type: 杂志文章,评审
doi:10.1080/1040841X.2017.1295225
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journal_title:Critical reviews in microbiology
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更新日期:2020-12-28 00:00:00
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journal_title:Critical reviews in microbiology
pub_type: 杂志文章,评审
doi:10.3109/10408418909105721
更新日期:1989-01-01 00:00:00
abstract::The first Alicyclobacillus spp. was isolated in 1982, and was originally thought to be strictly limited to thermophilic and acidic environments. Two years later, another Alicyclobacillus sp., A. acidoterrestris, was identified as the causative agent in spoilage of commercially pasteurized apple juice. Subsequent studi...
journal_title:Critical reviews in microbiology
pub_type: 杂志文章,评审
doi:10.1080/10408410490435089
更新日期:2004-01-01 00:00:00
abstract::Nanotechnology has revolutionized almost all the fields of science and technology, particularly the food packaging industry. Accordingly, some nanoparticles can be used in food contact materials to preserve food products for longer periods. To date, many inorganic and metal nanoparticles have been implemented to synth...
journal_title:Critical reviews in microbiology
pub_type: 杂志文章,评审
doi:10.1080/1040841X.2017.1332001
更新日期:2018-03-01 00:00:00
abstract::The bacteria having a unique ring-like morphology first isolated from nasal mucus by Weibel in 1887 were classified as a new genus Spirosoma by Migula in 1894. However, because these bacteria were not completely described for taxonomic purposes and their cultures were no longer available, the genus was deleted from th...
journal_title:Critical reviews in microbiology
pub_type: 杂志文章,评审
doi:10.3109/10408419009114761
更新日期:1990-01-01 00:00:00
abstract::Gonorrhea is a major, global public health problem for which there is no vaccine. The continuing emergence of antibiotic-resistant strains raises concerns that untreatable Neisseria gonorrhoeae may become widespread in the near future. Consequently, there is an urgent need for increased efforts towards the development...
journal_title:Critical reviews in microbiology
pub_type: 杂志文章,评审
doi:10.3109/1040841X.2015.1105782
更新日期:2016-11-01 00:00:00
abstract::Mycobacteria are endowed with substances that profoundly affect the immune system. Leprosy and tuberculosis exemplify broad spectra of useful and detrimental immune responses of mycobacterial infections that range from intense potentiation to severe specific adn nonspecific suppression of humoral and cellular immune e...
journal_title:Critical reviews in microbiology
pub_type: 杂志文章,评审
doi:10.3109/10408418209104488
更新日期:1982-01-01 00:00:00
abstract::Within Gram-positive bacteria, the expression of target genes is controlled at the population level via signaling peptides, also known as pheromones. Pheromones control a wide range of functions, including competence, virulence, and others that remain unknown. Until now, their role in bacterial gene regulation has pro...
journal_title:Critical reviews in microbiology
pub_type: 杂志文章,评审
doi:10.3109/1040841X.2014.948804
更新日期:2016-05-01 00:00:00
abstract::The female genital tract is an intricate, yet balanced ecosystem that hosts a variety of different residential microflora. The physiological changes that occur during pregnancy may disrupt this balanced ecosystem and predispose women to a potentially pathogenic microbiota. Bacteria that are associated with bacterial v...
journal_title:Critical reviews in microbiology
pub_type: 杂志文章,评审
doi:10.3109/1040841X.2014.954522
更新日期:2016-05-01 00:00:00
abstract::The use of many rapid detection technologies could be expanded if the bacteria were separated, concentrated, and purified from the sample matrix before detection. Specific advantages of bacterial concentration might include facilitating the detection of multiple bacterial strains; removal of matrix-associated assay in...
journal_title:Critical reviews in microbiology
pub_type: 杂志文章,评审
doi:10.1080/10408410490266410
更新日期:2004-01-01 00:00:00
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journal_title:Critical reviews in microbiology
pub_type: 杂志文章,meta分析,评审
doi:10.3109/1040841X.2014.885930
更新日期:2016-01-01 00:00:00
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journal_title:Critical reviews in microbiology
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doi:10.1080/10408419891294262
更新日期:1998-01-01 00:00:00
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journal_title:Critical reviews in microbiology
pub_type: 杂志文章,评审
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更新日期:2000-01-01 00:00:00
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journal_title:Critical reviews in microbiology
pub_type: 杂志文章,评审
doi:10.3109/1040841X.2013.763219
更新日期:2014-02-01 00:00:00
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journal_title:Critical reviews in microbiology
pub_type: 杂志文章,评审
doi:10.1080/713608014
更新日期:2003-01-01 00:00:00
abstract::A chronically weak area in research papers, reports, and reviews is the complete identification of important background reference documents that formed the building blocks for the research. A method for systematically determining these important references is presented. Citation-Assisted Background (CAB) is based on t...
journal_title:Critical reviews in microbiology
pub_type: 杂志文章,评审
doi:10.3109/1040841X.2010.484002
更新日期:2010-11-01 00:00:00
abstract::Programmed cell death (PCD), also referred to as apoptosis, is a cellular "suicide" mechanism, based on information from its own internal metabolism, environment, developmental history, and genome. This system was described in eukaryotes continuously along evolution, through amoebae, nematodes, insects, and animals. P...
journal_title:Critical reviews in microbiology
pub_type: 杂志文章,评审
doi:10.3109/10408419709115136
更新日期:1997-01-01 00:00:00
abstract::The numbers and diversity of microbes in ecosystems within and around us is unmatched, yet most of these microorganisms remain recalcitrant to in vitro cultivation. Various high-throughput molecular techniques, collectively termed multi-omics, provide insights into the genomic structure and metabolic potential as well...
journal_title:Critical reviews in microbiology
pub_type: 杂志文章,评审
doi:10.1080/1040841X.2017.1332003
更新日期:2018-03-01 00:00:00
abstract::Lipases are esterases able to hydrolyze water-insoluble esters such as long-chain triglycerides. These enzymes also catalyze the formation of esters (esterification) and the exchange of ester bonds (transesterification) when present in nonaqueous media. Lipases display a high degree of specificity and enantioselectivi...
journal_title:Critical reviews in microbiology
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更新日期:1994-01-01 00:00:00
abstract::The approach to this article will be the review of experimental developments achieved in recent years in the fields of biochemistry, molecular biology, ultrastructure, etc. and that have suggested models and hypothesis in order to understand the regulation of the molecular mechanisms involved in fungal differentiation...
journal_title:Critical reviews in microbiology
pub_type: 杂志文章,评审
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更新日期:1984-01-01 00:00:00
abstract::Heavy metal contamination has become a worldwide environmental concern due to its toxicity, non-degradability and food-chain bioaccumulation. Conventional physical and chemical treatment methods for heavy metal removal have disadvantages such as cost-intensiveness, incomplete removal, secondary pollution and the lack ...
journal_title:Critical reviews in microbiology
pub_type: 杂志文章,评审
doi:10.3109/1040841X.2013.813898
更新日期:2015-06-01 00:00:00
abstract::The human fungal pathogen Candida albicans switches from a budding yeast form to a polarized hyphal form in response to various external signals. This morphogenetic switching has been implicated in the development of pathogenicity. Several signaling pathways that regulate morphogenesis have been identified, including ...
journal_title:Critical reviews in microbiology
pub_type: 杂志文章,评审
doi:10.1080/713610451
更新日期:2003-01-01 00:00:00