The tobacco genome sequence and its comparison with those of tomato and potato.

Abstract:

:The allotetraploid plant Nicotiana tabacum (common tobacco) is a major crop species and a model organism, for which only very fragmented genomic sequences are currently available. Here we report high-quality draft genomes for three main tobacco varieties. These genomes show both the low divergence of tobacco from its ancestors and microsynteny with other Solanaceae species. We identify over 90,000 gene models and determine the ancestral origin of tobacco mosaic virus and potyvirus disease resistance in tobacco. We anticipate that the draft genomes will strengthen the use of N. tabacum as a versatile model organism for functional genomics and biotechnology applications.

journal_name

Nat Commun

journal_title

Nature communications

authors

Sierro N,Battey JN,Ouadi S,Bakaher N,Bovet L,Willig A,Goepfert S,Peitsch MC,Ivanov NV

doi

10.1038/ncomms4833

subject

Has Abstract

pub_date

2014-05-08 00:00:00

pages

3833

issn

2041-1723

pii

ncomms4833

journal_volume

5

pub_type

杂志文章
  • All-optical regenerator of multi-channel signals.

    abstract::One of the main reasons why nonlinear-optical signal processing (regeneration, logic, etc.) has not yet become a practical alternative to electronic processing is that the all-optical elements with nonlinear input-output relationship have remained inherently single-channel devices (just like their electronic counterpa...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-017-00874-0

    authors: Li L,Patki PG,Kwon YB,Stelmakh V,Campbell BD,Annamalai M,Lakoba TI,Vasilyev M

    更新日期:2017-10-12 00:00:00

  • Hippocampal clock regulates memory retrieval via Dopamine and PKA-induced GluA1 phosphorylation.

    abstract::Cognitive performance in people varies according to time-of-day, with memory retrieval declining in the late afternoon-early evening. However, functional roles of local brain circadian clocks in memory performance remains unclear. Here, we show that hippocampal clock controlled by the circadian-dependent transcription...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-13554-y

    authors: Hasegawa S,Fukushima H,Hosoda H,Serita T,Ishikawa R,Rokukawa T,Kawahara-Miki R,Zhang Y,Ohta M,Okada S,Tanimizu T,Josselyn SA,Frankland PW,Kida S

    更新日期:2019-12-18 00:00:00

  • Mechanism of signal transduction of the LOV2-Jα photosensor from Avena sativa.

    abstract::Fusion proteins containing blue-light-activable protein domains possess great potential as molecular switches in cell signalling. This has recently been impressively demonstrated by connecting the light oxygen voltage LOV2-Jα-protein domain of A. sativa (AsLOV2-Jα) with the Rac1-GTPase, responsible for regulating the ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms1121

    authors: Peter E,Dick B,Baeurle SA

    更新日期:2010-11-16 00:00:00

  • Hot carriers perspective on the nature of traps in perovskites.

    abstract::Amongst the many spectacular properties of hybrid lead halide perovskites, their defect tolerance is regarded as the key enabler for a spectrum of high-performance optoelectronic devices that propel perovskites to prominence. However, the plateauing efficiency enhancement of perovskite devices calls into question the ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-16463-7

    authors: Righetto M,Lim SS,Giovanni D,Lim JWM,Zhang Q,Ramesh S,Tay YKE,Sum TC

    更新日期:2020-06-01 00:00:00

  • Accessibility of the histone H3 tail in the nucleosome for binding of paired readers.

    abstract::Combinatorial polyvalent contacts of histone-binding domains or readers commonly mediate localization and activities of chromatin-associated proteins. A pair of readers, the PHD fingers of the protein CHD4, has been shown to bivalently recognize histone H3 tails. Here we describe a mechanism by which these linked but ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-017-01598-x

    authors: Gatchalian J,Wang X,Ikebe J,Cox KL,Tencer AH,Zhang Y,Burge NL,Di L,Gibson MD,Musselman CA,Poirier MG,Kono H,Hayes JJ,Kutateladze TG

    更新日期:2017-11-14 00:00:00

  • Fast photodynamics of azobenzene probed by scanning excited-state potential energy surfaces using slow spectroscopy.

    abstract::Azobenzene, a versatile and polymorphic molecule, has been extensively and successfully used for photoswitching applications. The debate over its photoisomerization mechanism leveraged on the computational scrutiny with ever-increasing levels of theory. However, the most resolved absorption spectrum for the transition...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms6860

    authors: Tan EM,Amirjalayer S,Smolarek S,Vdovin A,Zerbetto F,Buma WJ

    更新日期:2015-01-06 00:00:00

  • eIF6 coordinates insulin sensitivity and lipid metabolism by coupling translation to transcription.

    abstract::Insulin regulates glycaemia, lipogenesis and increases mRNA translation. Cells with reduced eukaryotic initiation factor 6 (eIF6) do not increase translation in response to insulin. The role of insulin-regulated translation is unknown. Here we show that reduction of insulin-regulated translation in mice heterozygous f...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms9261

    authors: Brina D,Miluzio A,Ricciardi S,Clarke K,Davidsen PK,Viero G,Tebaldi T,Offenhäuser N,Rozman J,Rathkolb B,Neschen S,Klingenspor M,Wolf E,Gailus-Durner V,Fuchs H,Hrabe de Angelis M,Quattrone A,Falciani F,Biffo S

    更新日期:2015-09-18 00:00:00

  • Optogenetic analysis of synaptic transmission in the central nervous system of the nematode Caenorhabditis elegans.

    abstract::A reliable method for recording evoked synaptic events in identified neurons in Caenorhabditis elegans would greatly accelerate our understanding of its nervous system at the molecular, cellular and network levels. Here we describe a method for recording synaptic currents and potentials from identified neurons in near...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms1304

    authors: Lindsay TH,Thiele TR,Lockery SR

    更新日期:2011-01-01 00:00:00

  • Short-term reward experience biases inference despite dissociable neural correlates.

    abstract::Optimal decision-making employs short-term rewards and abstract long-term information based on which of these is deemed relevant. Employing short- vs. long-term information is associated with different learning mechanisms, yet neural evidence showing that these two are dissociable is lacking. Here we demonstrate that ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-017-01703-0

    authors: Fischer AG,Bourgeois-Gironde S,Ullsperger M

    更新日期:2017-11-22 00:00:00

  • Formation pathways of mesoporous silica nanoparticles with dodecagonal tiling.

    abstract::Considerable progress in the fabrication of quasicrystals demonstrates that they can be realized in a broad range of materials. However, the development of chemistries enabling direct experimental observation of early quasicrystal growth pathways remains challenging. Here, we report the synthesis of four surfactant-di...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-017-00351-8

    authors: Sun Y,Ma K,Kao T,Spoth KA,Sai H,Zhang D,Kourkoutis LF,Elser V,Wiesner U

    更新日期:2017-08-15 00:00:00

  • Human antibody 3E1 targets the HA stem region of H1N1 and H5N6 influenza A viruses.

    abstract::As influenza A viruses remain a major threat to human health worldwide, the discovery of broadly neutralizing monoclonal antibodies that recognize conserved epitopes would facilitate the development of antibody-based therapeutic strategies. Here we report that a VH4-4-encoded human mAb named 3E1 could neutralize H1 an...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms13577

    authors: Wang W,Sun X,Li Y,Su J,Ling Z,Zhang T,Wang F,Zhang H,Chen H,Ding J,Sun B

    更新日期:2016-12-02 00:00:00

  • Plasmodium falciparum heat shock protein 110 stabilizes the asparagine repeat-rich parasite proteome during malarial fevers.

    abstract::One-fourth of Plasmodium falciparum proteins have asparagine repeats that increase the propensity for aggregation, especially at elevated temperatures that occur routinely in malaria-infected patients. Here we report that a Plasmodium Asn repeat-containing protein (PFI1155w) formed aggregates in mammalian cells at feb...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms2306

    authors: Muralidharan V,Oksman A,Pal P,Lindquist S,Goldberg DE

    更新日期:2012-01-01 00:00:00

  • Stable magnetostructural coupling with tunable magnetoresponsive effects in hexagonal ferromagnets.

    abstract::The magnetostructural coupling between the structural and the magnetic transition has a crucial role in magnetoresponsive effects in a martensitic-transition system. A combination of various magnetoresponsive effects based on this coupling may facilitate the multifunctional applications of a host material. Here we dem...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms1868

    authors: Liu E,Wang W,Feng L,Zhu W,Li G,Chen J,Zhang H,Wu G,Jiang C,Xu H,de Boer F

    更新日期:2012-05-29 00:00:00

  • Publisher Correction: Z-ring membrane anchors associate with cell wall synthases to initiate bacterial cell division.

    abstract::The original version of this Article contained errors in Figures 1 and 3. In Fig. 1b, the label 'IP-PBP3' above the second of the three blots incorrectly read 'IP-PBP1B'. In Fig. 3b, the label 'PBP1B' under the first bar of each chart incorrectly read 'PBP1A'. These errors have been corrected in both the PDF and HTML ...

    journal_title:Nature communications

    pub_type: 杂志文章,已发布勘误

    doi:10.1038/s41467-019-08410-y

    authors: Pazos M,Peters K,Casanova M,Palacios P,VanNieuwenhze M,Breukink E,Vicente M,Vollmer W

    更新日期:2019-01-30 00:00:00

  • Multi-omic data integration enables discovery of hidden biological regularities.

    abstract::Rapid growth in size and complexity of biological data sets has led to the 'Big Data to Knowledge' challenge. We develop advanced data integration methods for multi-level analysis of genomic, transcriptomic, ribosomal profiling, proteomic and fluxomic data. First, we show that pairwise integration of primary omics dat...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms13091

    authors: Ebrahim A,Brunk E,Tan J,O'Brien EJ,Kim D,Szubin R,Lerman JA,Lechner A,Sastry A,Bordbar A,Feist AM,Palsson BO

    更新日期:2016-10-26 00:00:00

  • Increasing occurrence of cold and warm extremes during the recent global warming slowdown.

    abstract::The recent levelling of global mean temperatures after the late 1990s, the so-called global warming hiatus or slowdown, ignited a surge of scientific interest into natural global mean surface temperature variability, observed temperature biases, and climate communication, but many questions remain about how these find...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-04040-y

    authors: Johnson NC,Xie SP,Kosaka Y,Li X

    更新日期:2018-04-30 00:00:00

  • The signalling conformation of the insulin receptor ectodomain.

    abstract::Understanding the structural biology of the insulin receptor and how it signals is of key importance in the development of insulin analogs to treat diabetes. We report here a cryo-electron microscopy structure of a single insulin bound to a physiologically relevant, high-affinity version of the receptor ectodomain, th...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-06826-6

    authors: Weis F,Menting JG,Margetts MB,Chan SJ,Xu Y,Tennagels N,Wohlfart P,Langer T,Müller CW,Dreyer MK,Lawrence MC

    更新日期:2018-10-24 00:00:00

  • Single-pass transformation of syngas into ethanol with high selectivity by triple tandem catalysis.

    abstract::Synthesis of ethanol from non-petroleum carbon resources via syngas (a mixture of H2 and CO) is an important but challenging research target. The current conversion of syngas to ethanol suffers from low selectivity or multiple processes with high energy consumption. Here, we report a high-selective conversion of synga...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-14672-8

    authors: Kang J,He S,Zhou W,Shen Z,Li Y,Chen M,Zhang Q,Wang Y

    更新日期:2020-02-11 00:00:00

  • CFP1 coordinates histone H3 lysine-4 trimethylation and meiotic cell cycle progression in mouse oocytes.

    abstract::Trimethylation of histone H3 on lysine-4 (H3K4me3) is associated with gene-regulatory elements, but its transcription-independent function in cell division is unclear. CxxC-finger protein-1 (CFP1) is a major mediator of H3K4 trimethylation in mouse oocytes. Here we report that oocyte-specific knockout of Cxxc1, inhibi...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-05930-x

    authors: Sha QQ,Dai XX,Jiang JC,Yu C,Jiang Y,Liu J,Ou XH,Zhang SY,Fan HY

    更新日期:2018-08-28 00:00:00

  • Expansion-contraction of photoresponsive artificial muscle regulated by host-guest interactions.

    abstract::The development of stimulus-responsive polymeric materials is of great importance, especially for the development of remotely manipulated materials not in direct contact with an actuator. Here we design a photoresponsive supramolecular actuator by integrating host-guest interactions and photoswitching ability in a hyd...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms2280

    authors: Takashima Y,Hatanaka S,Otsubo M,Nakahata M,Kakuta T,Hashidzume A,Yamaguchi H,Harada A

    更新日期:2012-01-01 00:00:00

  • NACA deficiency reveals the crucial role of somite-derived stromal cells in haematopoietic niche formation.

    abstract::The ontogeny of haematopoietic niches in vertebrates is essentially unknown. Here we show that the stromal cells of the caudal haematopoietic tissue (CHT), the first niche where definitive haematopoietic stem/progenitor cells (HSPCs) home in zebrafish development, derive from the caudal somites through an epithelial-m...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms9375

    authors: Murayama E,Sarris M,Redd M,Le Guyader D,Vivier C,Horsley W,Trede N,Herbomel P

    更新日期:2015-09-28 00:00:00

  • Single-trial dynamics of motor cortex and their applications to brain-machine interfaces.

    abstract::Increasing evidence suggests that neural population responses have their own internal drive, or dynamics, that describe how the neural population evolves through time. An important prediction of neural dynamical models is that previously observed neural activity is informative of noisy yet-to-be-observed activity on s...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms8759

    authors: Kao JC,Nuyujukian P,Ryu SI,Churchland MM,Cunningham JP,Shenoy KV

    更新日期:2015-07-29 00:00:00

  • Improved ethanol electrooxidation performance by shortening Pd-Ni active site distance in Pd-Ni-P nanocatalysts.

    abstract::Incorporating oxophilic metals into noble metal-based catalysts represents an emerging strategy to improve the catalytic performance of electrocatalysts in fuel cells. However, effects of the distance between the noble metal and oxophilic metal active sites on the catalytic performance have rarely been investigated. H...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms14136

    authors: Chen L,Lu L,Zhu H,Chen Y,Huang Y,Li Y,Wang L

    更新日期:2017-01-10 00:00:00

  • KMT2D/MLL2 inactivation is associated with recurrence in adult-type granulosa cell tumors of the ovary.

    abstract::Adult-type granulosa cell tumors of the ovary (aGCTs) are rare gynecologic malignancies that exhibit a high frequency of somatic FOXL2 c.C402G (p.Cys134Trp) mutation. Treatment of relapsed aGCT remains a significant clinical challenge. Here we show, using whole-exome and cancer gene panel sequencing of 79 aGCTs from t...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-04950-x

    authors: Hillman RT,Celestino J,Terranova C,Beird HC,Gumbs C,Little L,Nguyen T,Thornton R,Tippen S,Zhang J,Lu KH,Gershenson DM,Rai K,Broaddus RR,Futreal PA

    更新日期:2018-06-27 00:00:00

  • Changes in genome organization of parasite-specific gene families during the Plasmodium transmission stages.

    abstract::The development of malaria parasites throughout their various life cycle stages is coordinated by changes in gene expression. We previously showed that the three-dimensional organization of the Plasmodium falciparum genome is strongly associated with gene expression during its replication cycle inside red blood cells....

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-04295-5

    authors: Bunnik EM,Cook KB,Varoquaux N,Batugedara G,Prudhomme J,Cort A,Shi L,Andolina C,Ross LS,Brady D,Fidock DA,Nosten F,Tewari R,Sinnis P,Ay F,Vert JP,Noble WS,Le Roch KG

    更新日期:2018-05-15 00:00:00

  • Measuring the Hubble constant with a sample of kilonovae.

    abstract::Kilonovae produced by the coalescence of compact binaries with at least one neutron star are promising standard sirens for an independent measurement of the Hubble constant (H0). Through their detection via follow-up of gravitational-wave (GW), short gamma-ray bursts (sGRBs) or optical surveys, a large sample of kilon...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-17998-5

    authors: Coughlin MW,Antier S,Dietrich T,Foley RJ,Heinzel J,Bulla M,Christensen N,Coulter DA,Issa L,Khetan N

    更新日期:2020-08-17 00:00:00

  • Nonstoichiometric acid-base reaction as reliable synthetic route to highly stable CH3NH3PbI3 perovskite film.

    abstract::Perovskite solar cells have received worldwide interests due to swiftly improved efficiency but the poor stability of the perovskite component hampers the device fabrication under normal condition. Herein, we develop a reliable nonstoichiometric acid-base reaction route to stable perovskite films by intermediate chemi...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms13503

    authors: Long M,Zhang T,Chai Y,Ng CF,Mak TC,Xu J,Yan K

    更新日期:2016-11-15 00:00:00

  • Conformational gating of DNA conductance.

    abstract::DNA is a promising molecule for applications in molecular electronics because of its unique electronic and self-assembly properties. Here we report that the conductance of DNA duplexes increases by approximately one order of magnitude when its conformation is changed from the B-form to the A-form. This large conductan...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms9870

    authors: Artés JM,Li Y,Qi J,Anantram MP,Hihath J

    更新日期:2015-12-09 00:00:00

  • Bioengineering of injectable encapsulated aggregates of pluripotent stem cells for therapy of myocardial infarction.

    abstract::It is difficult to achieve minimally invasive injectable cell delivery while maintaining high cell retention and animal survival for in vivo stem cell therapy of myocardial infarction. Here we show that pluripotent stem cell aggregates pre-differentiated into the early cardiac lineage and encapsulated in a biocompatib...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms13306

    authors: Zhao S,Xu Z,Wang H,Reese BE,Gushchina LV,Jiang M,Agarwal P,Xu J,Zhang M,Shen R,Liu Z,Weisleder N,He X

    更新日期:2016-10-27 00:00:00

  • Liquid phase blending of metal-organic frameworks.

    abstract::The liquid and glass states of metal-organic frameworks (MOFs) have recently become of interest due to the potential for liquid-phase separations and ion transport, alongside the fundamental nature of the latter as a new, fourth category of melt-quenched glass. Here we show that the MOF liquid state can be blended wit...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-04553-6

    authors: Longley L,Collins SM,Zhou C,Smales GJ,Norman SE,Brownbill NJ,Ashling CW,Chater PA,Tovey R,Schönlieb CB,Headen TF,Terrill NJ,Yue Y,Smith AJ,Blanc F,Keen DA,Midgley PA,Bennett TD

    更新日期:2018-06-15 00:00:00