Colorectal cancer biomarker discovery and validation using LC-MS/MS-based proteomics in blood: truth or dare?

Abstract:

:Globally, colorectal cancer (CRC) is the third most common malignant neoplasm. However, highly sensitive, specific, noninvasive tests that allow CRC diagnosis at an early stage are still needed. As circulatory blood reflects the physiological status of an individual and/or the disease status for several disorders, efforts have been undertaken to identify candidate diagnostic CRC markers in plasma and serum. In this review, the challenges, bottlenecks and promising properties of mass spectrometry (MS)-based proteomics in blood are discussed. More specifically, important aspects in clinical design, sample retrieval, sample preparation, and MS analysis are presented. The recent developments in targeted MS approaches in plasma or serum are highlighted as well.

journal_name

Expert Rev Proteomics

authors

Reumer A,Maes E,Mertens I,Cho WC,Landuyt B,Valkenborg D,Schoofs L,Baggerman G

doi

10.1586/14789450.2014.905743

subject

Has Abstract

pub_date

2014-08-01 00:00:00

pages

449-63

issue

4

eissn

1478-9450

issn

1744-8387

journal_volume

11

pub_type

杂志文章,评审
  • Urinary biomarkers of physical activity: candidates and clinical utility.

    abstract::Chronic physical inactivity is a major risk factor for a number of important lifestyle diseases, while inappropriate exposure to high physical demands is a risk factor for musculoskeletal injury and fatigue. Proteomic and metabolomic investigations of the physical activity continuum - extreme sedentariness to extremes...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章,评审

    doi:10.1586/14789450.2014.859527

    authors: Sampson DL,Broadbent JA,Parker AW,Upton Z,Parker TJ

    更新日期:2014-02-01 00:00:00

  • Proteomic profiling of fatty acid binding proteins in muscular dystrophy.

    abstract::Introduction: Duchenne muscular dystrophy is a neuromuscular disorder, which is caused by abnormalities in the DMD gene that encodes the membrane cytoskeletal protein dystrophin. Besides progressive skeletal muscle wasting, dystrophinopathy also affects non-skeletal muscle tissues, including cells in the cardio-respir...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章

    doi:10.1080/14789450.2020.1732214

    authors: Dowling P,Gargan S,Zweyer M,Swandulla D,Ohlendieck K

    更新日期:2020-02-01 00:00:00

  • A decade of proteomics accomplished! Central and Eastern European Proteomic Conference (CEEPC) celebrates its 10th Anniversary in Budapest, Hungary.

    abstract::The Central and Eastern European Proteomic Conference (CEEPC) proudly celebrated its 10th Anniversary with an exciting scientific program inclusive of proteome, proteomics and systems biology in Budapest, Hungary. Since 2007, CEEPC has represented 'state-of the-art' proteomics in and around Central and Eastern Europe ...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章

    doi:10.1080/14789450.2017.1339604

    authors: Gadher SJ,Drahos L,Vékey K,Kovarova H

    更新日期:2017-07-01 00:00:00

  • Hyperamylinemia as a risk factor for accelerated cognitive decline in diabetes.

    abstract::Type II diabetes increases the risk for cognitive decline via multiple traits. Amylin is a pancreatic hormone that has amyloidogenic and cytotoxic properties similar to the amyloid-β peptide. The amylin hormone is overexpressed in individuals with pre-diabetic insulin resistance or obesity leading to amylin oligomeriz...

    journal_title:Expert review of proteomics

    pub_type: 社论,评审

    doi:10.1586/14789450.2015.1104251

    authors: Ly H,Despa F

    更新日期:2015-01-01 00:00:00

  • Tissue and serum proteomic profiling for diagnostic and prognostic bladder cancer biomarkers.

    abstract::A panel of biomarkers for the early detection of bladder cancer has not yet been identified. Many different molecules, including DNA, RNA or proteins have been reported but none have provided adequate sensitivity for a single-tier screening test or a test to replace cystoscopy. Therefore, multimarker panels are discus...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章,评审

    doi:10.1586/epr.10.82

    authors: Schwamborn K,Gaisa NT,Henkel C

    更新日期:2010-12-01 00:00:00

  • Proteomic studies of common chronic pain conditions - a systematic review and associated network analyses.

    abstract:INTRODUCTION:The lack of biomarkers indicating involved nociceptive and/or pain mechanisms makes diagnostic procedures problematic. Clinical pain research has begun to use proteomics. AREAS COVERED:This systematic review covers proteomic studies of chronic pain cohorts and in relation to clinical variables. Searches i...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章

    doi:10.1080/14789450.2020.1797499

    authors: Gerdle B,Ghafouri B

    更新日期:2020-06-01 00:00:00

  • Emerging protein array technologies for proteomics.

    abstract::Numerous efforts have been made to understand fundamental biology of diseases based on gene expression. However, the relationship between gene expression and onset of disease often remains obscure. The great advances in protein microarrays allow us to investigate this unclear question through protein profiles, which a...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章,评审

    doi:10.1586/epr.12.67

    authors: Lee JR,Magee DM,Gaster RS,LaBaer J,Wang SX

    更新日期:2013-02-01 00:00:00

  • Protein biomarkers for subtyping breast cancer and implications for future research.

    abstract:INTRODUCTION:Breast cancer subtypes are currently defined by a combination of morphologic, genomic, and proteomic characteristics. These subtypes provide a molecular portrait of the tumor that aids diagnosis, prognosis, and treatment escalation/de-escalation options. Gene expression signatures describing intrinsic brea...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章,评审

    doi:10.1080/14789450.2018.1421071

    authors: Mueller C,Haymond A,Davis JB,Williams A,Espina V

    更新日期:2018-02-01 00:00:00

  • Transcriptional control and transcriptomic analysis of lipid metabolism in skin barrier formation and atopic dermatitis (AD).

    abstract::Introduction: Atopic dermatitis (AD) is a multifactorial ailment associated with barrier breach and intense systemic inflammation. Several studies over the years have shown the complex interplay of a large number of factors in governing the progression and outcome of AD. In addition to the diverse types of AD resultin...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章

    doi:10.1080/14789450.2019.1646128

    authors: Bhattacharya N,Ganguli-Indra G,Indra AK

    更新日期:2019-08-01 00:00:00

  • Tissue microarrays: bridging the gap between research and the clinic.

    abstract::Tissue microarrays are a high-throughput method for the investigation of biomarkers in multiple tissue specimens at once. This technique allows for the analysis of up to 500 tissue samples in a single experiment using immunohistochemistry and in situ hybridization. Recently, cell lines and xenografts have been reduced...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章,评审

    doi:10.1586/14789450.2.3.325

    authors: Braunschweig T,Chung JY,Hewitt SM

    更新日期:2005-06-01 00:00:00

  • Alcoholism: protein expression profiles in a human hippocampal model.

    abstract::It is well known that chronic, excessive consumption of alcohol can cause brain damage/structural changes in the regions important for neurocognitive function. Some of the damages are permanent, while others are reversible. Molecular mechanisms underlying alcohol-induced and/or -related brain damage are largely unknow...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章,评审

    doi:10.1586/14789450.5.2.321

    authors: Matsumoto H,Matsumoto I

    更新日期:2008-04-01 00:00:00

  • Proximity ligation assays: a recent addition to the proteomics toolbox.

    abstract::An essential skill for every researcher is to learn how to select and apply the most appropriate methods for the questions they are trying to answer. With the extensive variety of methods available, it is increasingly important to scrutinize the advantages and disadvantages of these techniques prior to making a decisi...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章,评审

    doi:10.1586/epr.10.10

    authors: Weibrecht I,Leuchowius KJ,Clausson CM,Conze T,Jarvius M,Howell WM,Kamali-Moghaddam M,Söderberg O

    更新日期:2010-06-01 00:00:00

  • Transcriptomic profiling in Cutaneous Leishmaniasis patients.

    abstract:INTRODUCTION:Cutaneous leishmaniasis (CL), caused by different Leishmania parasite species, is associated with parasite-induced immune-mediated skin inflammation and ulceration. Whereas many CL studies focus on gene expression signatures in mouse models, the transcriptional response driving human patients in the field ...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章

    doi:10.1080/14789450.2020.1812390

    authors: Masoudzadeh N,Mizbani A,Rafati S

    更新日期:2020-01-01 00:00:00

  • Clinical proteomics in obstetrics and neonatology.

    abstract::Clinical proteomics has been applied to the identification of biomarkers of obstetric and neonatal disease. We will discuss a number of encouraging studies that have led to potentially valid biomarkers in the context of Down's syndrome, preterm birth, amniotic infections, preeclampsia, intrauterine growth restriction ...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章,评审

    doi:10.1586/14789450.2014.872564

    authors: Klein J,Buffin-Meyer B,Mullen W,Carty DM,Delles C,Vlahou A,Mischak H,Decramer S,Bascands JL,Schanstra JP

    更新日期:2014-02-01 00:00:00

  • Understanding type 1 diabetes through proteomics.

    abstract:INTRODUCTION:Auto-immunity against pancreatic beta-cells leads to an absolute shortage of the hormone insulin, resulting in hyperglycemia and the onset of type 1 diabetes (T1D). Proteomic approaches have been used to elucidate the mechanisms of beta-cell dysfunction and death. Areas covered: In the present review, we d...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章,评审

    doi:10.1080/14789450.2017.1345633

    authors: Crèvecoeur I,Vig S,Mathieu C,Overbergh L

    更新日期:2017-07-01 00:00:00

  • Proteomics in atherothrombosis: a future perspective.

    abstract::Atherothrombosis is the primary cause of death in Western countries. The cellular and molecular mechanisms underlying atherosclerosis remain widely unknown. The complex nature of atherosclerotic cardiovascular diseases demands the development of novel technologies that enable discovery of new biomarkers for early dise...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章,评审

    doi:10.1586/14789450.4.2.249

    authors: Martín-Ventura JL,Blanco-Colio LM,Tunon J,Gomez-Guerrero C,Michel JB,Meilhac O,Egido J

    更新日期:2007-04-01 00:00:00

  • Update on: proteome analysis in thyroid pathology - part II: overview of technical and clinical enhancement of proteomic investigation of the thyroid lesions.

    abstract:INTRODUCTION:An accurate diagnostic classification of thyroid lesions remains an important clinical aspect that needs to be addressed in order to avoid 'diagnostic' thyroidectomies. Among the several 'omics' techniques, proteomics is playing a pivotal role in the search for diagnostic markers. In recent years, differen...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章,评审

    doi:10.1080/14789450.2018.1532793

    authors: Piga I,Casano S,Smith A,Tettamanti S,Leni D,Capitoli G,Pincelli AI,Scardilli M,Galimberti S,Magni F,Pagni F

    更新日期:2018-11-01 00:00:00

  • Framework for a systems approach to proteomic biomarker profiling in polycystic ovary syndrome.

    abstract::Polycystic ovary syndrome (PCOS) is the most common endocrine disorder in females of reproductive age, and its prevalence ranges between 6 and 8%. Associated problems include infertility, menstrual disorders, hirsutism and obesity. In addition, individuals with PCOS may be at increased risk of diabetes, endometrial ca...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章,评审

    doi:10.1586/epr.09.68

    authors: Atiomo WU,Khalid S,Ziauddin A,Tooth D,Layfield R

    更新日期:2009-10-01 00:00:00

  • Recent advances in single-cell MALDI mass spectrometry imaging and potential clinical impact.

    abstract::Single-cell analysis is gaining popularity in the field of mass spectrometry as a method for analyzing protein and peptide content in cells. The spatial resolution of MALDI mass spectrometry (MS) imaging is by a large extent limited by the laser focal diameter and the displacement of analytes during matrix deposition....

    journal_title:Expert review of proteomics

    pub_type: 杂志文章,评审

    doi:10.1586/epr.11.53

    authors: Boggio KJ,Obasuyi E,Sugino K,Nelson SB,Agar NY,Agar JN

    更新日期:2011-10-01 00:00:00

  • Complementary methods to assist subcellular fractionation in organellar proteomics.

    abstract::Organellar proteomics aims to describe the full complement of proteins of subcellular structures and organelles. When compared with whole-cell or whole-tissue proteomes, the more focused results from subcellular proteomic studies have yielded relatively simpler datasets from which biologically relevant information can...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章,评审

    doi:10.1586/14789450.5.4.603

    authors: Gauthier DJ,Lazure C

    更新日期:2008-08-01 00:00:00

  • The role of proteomics in assessing beta-cell dysfunction and death in type 1 diabetes.

    abstract::Introduction: Type 1 diabetes (T1D) is characterized by autoimmune-induced dysfunction and destruction of the pancreatic beta cells. Unfortunately, this process is poorly understood, and the current best treatment for type 1 diabetes is the administration of exogenous insulin. To better understand these mechanisms and...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章

    doi:10.1080/14789450.2019.1634548

    authors: Nakayasu ES,Qian WJ,Evans-Molina C,Mirmira RG,Eizirik DL,Metz TO

    更新日期:2019-07-01 00:00:00

  • The role of mass spectrometry in the characterization of biologic protein products.

    abstract:INTRODUCTION:Mass spectrometry (MS) is widely used in the characterization of biomolecules including peptide and protein therapeutics. These biotechnology products have seen rapid growth over the past few decades and continue to dominate the global pharmaceutical market. Advances in MS instrumentation and techniques ha...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章,评审

    doi:10.1080/14789450.2018.1469982

    authors: Rathore D,Faustino A,Schiel J,Pang E,Boyne M,Rogstad S

    更新日期:2018-05-01 00:00:00

  • Proteome-wide analysis of neural stem cell differentiation to facilitate transition to cell replacement therapies.

    abstract::Neurodegenerative diseases are devastating disorders and the demands on their treatment are set to rise in connection with higher disease incidence. Knowledge of the spatiotemporal profile of cellular protein expression during neural differentiation and definition of a set of markers highly specific for targeted neura...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章,评审

    doi:10.1586/14789450.2015.977381

    authors: Zizkova M,Sucha R,Tyleckova J,Jarkovska K,Mairychova K,Kotrcova E,Marsala M,Gadher SJ,Kovarova H

    更新日期:2015-02-01 00:00:00

  • Proteomic study of skeletal muscle in obesity and type 2 diabetes: progress and potential.

    abstract:INTRODUCTION:Skeletal muscle is the major site of insulin-stimulated glucose uptake and imparts the beneficial effects of exercise, and hence is an important site of insulin resistance in obesity and type 2 diabetes (T2D). Despite extensive molecular biology-oriented research the molecular mechanisms underlying insulin...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章,评审

    doi:10.1080/14789450.2018.1528147

    authors: Kruse R,Højlund K

    更新日期:2018-10-01 00:00:00

  • New insights into viral structure and virus-cell interactions through proteomics.

    abstract::Although genomics techniques such as DNA microarrays have been widely used in virology, much more limited use has been made of proteomics. Although difficult, proteomics can greatly contribute to an understanding of virus-cell interactions, including the ternary structure of viral receptors at the cell surface, post-t...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章,评审

    doi:10.1586/14789450.2.4.577

    authors: Bernhard OK,Diefenbach RJ,Cunningham AL

    更新日期:2005-08-01 00:00:00

  • Detecting peptidic drugs, drug candidates and analogs in sports doping: current status and future directions.

    abstract::With the growing availability of mature systems and strategies in biotechnology and the continuously expanding knowledge of cellular processes and involved biomolecules, human sports drug testing has become a considerably complex field in the arena of analytical chemistry. Proving the exogenous origin of peptidic drug...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章

    doi:10.1586/14789450.2014.965159

    authors: Thevis M,Thomas A,Schänzer W

    更新日期:2014-12-01 00:00:00

  • Investigation of therapy resistance mechanisms in myeloid leukemia by protein profiling of bone marrow extracellular fluid.

    abstract::In spite of the effective chronic myeloid leukemia (CML) therapy, a small percentage will fail on therapy and develop acute myeloid leukemia-like blast crisis. Understanding the underlying biology of therapy resistance is probably needed to develop better blood cancer therapy, and CML may be an ideal disease model for...

    journal_title:Expert review of proteomics

    pub_type: 评论,杂志文章

    doi:10.1586/epr.12.55

    authors: Gjertsen BT,Wiig H

    更新日期:2012-12-01 00:00:00

  • Advances in the development of human protein microarrays.

    abstract:INTRODUCTION:High-content protein microarrays in principle enable the functional interrogation of the human proteome in a broad range of applications, including biomarker discovery, profiling of immune responses, identification of enzyme substrates, and quantifying protein-small molecule, protein-protein and protein-DN...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章,评审

    doi:10.1080/14789450.2017.1347042

    authors: Duarte JG,Blackburn JM

    更新日期:2017-07-01 00:00:00

  • Recent insights into human bronchial proteomics - how are we progressing and what is next?

    abstract:INTRODUCTION:The human respiratory system is highly prone to diseases and complications. Many lung diseases, including lung cancer (LC), tuberculosis (TB), and chronic obstructive pulmonary disease (COPD) have been among the most common causes of death worldwide. Cystic fibrosis (CF), the most common genetic disease in...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章,评审

    doi:10.1080/14789450.2017.1417847

    authors: Tan HW,Xu YM,Wu DD,Lau ATY

    更新日期:2018-02-01 00:00:00

  • Proteomic analysis of pancreatic ductal adenocarcinoma.

    abstract:INTRODUCTION:Pancreatic ductal adenocarcinoma (PDAC), which represents approximately 80% of all pancreatic cancers, is a highly aggressive malignant disease and one of the most lethal among all cancers. Overall, the 5-year survival rate among all pancreatic cancer patients is less than 9%; these rates have shown little...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章

    doi:10.1080/14789450.2020.1803743

    authors: Meleady P,Abdul Rahman R,Henry M,Moriarty M,Clynes M

    更新日期:2020-06-01 00:00:00