Abstract:
:Soil contamination with heavy metals is a widespread problem, especially prominent on grounds lying in the vicinity of mines, smelters, and other industrial facilities. Many such areas are located in Southern Poland; they are polluted mainly with Pb, Zn, Cd, or Cu, and locally also with Cr. As for now, little is known about most bacterial species thriving in such soils and even less about a core bacterial community--a set of taxa common to polluted soils. Therefore, we wanted to answer the question if such a set could be found in samples differing physicochemically and phytosociologically. To answer the question, we analyzed bacterial communities in three soil samples contaminated with Pb and Zn and two contaminated with Cr and lower levels of Pb and Zn. The communities were assessed with 16S rRNA gene fragments pyrosequencing. It was found that the samples differed significantly and Zn decreased both diversity and species richness at species and family levels, while plant species richness did not correlate with bacterial diversity. In spite of the differences between the samples, they shared many operational taxonomic units (OTUs) and it was possible to delineate the core microbiome of our sample set. The core set of OTUs comprised members of such taxa as Sphingomonas, Candidatus Solibacter, or Flexibacter showing that particular genera might be shared among sites ~40 km distant.
journal_name
Microb Ecoljournal_title
Microbial ecologyauthors
Gołębiewski M,Deja-Sikora E,Cichosz M,Tretyn A,Wróbel Bdoi
10.1007/s00248-013-0344-7subject
Has Abstractpub_date
2014-04-01 00:00:00pages
635-47issue
3eissn
0095-3628issn
1432-184Xjournal_volume
67pub_type
杂志文章abstract::Yeast communities of decayingStenocereus gummosus were analyzed for spatial, temporal, and physiological characteristics. Analysis of random samples within plants, between plants, and between localities shows that the species proportions of the yeast community are relatively constant within plants and between localiti...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/BF02011463
更新日期:1982-06-01 00:00:00
abstract::Understanding the rules that govern the successions of gut microbiota is prerequisite for testing general ecological theories and sustaining a desirable microbiota. However, the ignorance of microeukaryotes raises the question of whether gut microeukaryotes are assembled according to the same rules as bacteria. We tra...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/s00248-020-01533-6
更新日期:2020-11-01 00:00:00
abstract::Prochlorococcus is the most abundant photosynthetic prokaryote on our planet. The extensive ecological literature on the Prochlorococcus collective (PC) is based on the assumption that it comprises one single genus comprising the species Prochlorococcus marinus, containing itself a collective of ecotypes. Ecologists a...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/s00248-020-01526-5
更新日期:2020-10-01 00:00:00
abstract::The colonization and succession of diazotrophs are essential for the development of organic soil layers in desert. We examined the succession of diazotrophs in the well-established revegetated areas representing a chronosequence of 0 year (control), 22 years (restored artificially since 1981), 57 years (restored artif...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/s00248-015-0657-9
更新日期:2016-01-01 00:00:00
abstract::The microbial biomass and community structure of eight Chinese red soils with different fertility and land use history was investigated. Two community based microbiological measurements, namely, community level physiological profiling (CLPP) using Biolog sole C source utilization tests and phospholipid fatty acid (PLF...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/s002480000053
更新日期:2000-08-01 00:00:00
abstract::> Abstract Claims that organisms can be cultured from amber, if substantiated, would be significant contributions to our understanding of the evolution, tenacity, and potential spread of life. Three reports on the isolation of organisms from amber have been published. Cano and Borucki recently reported the isolation o...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/s002489900153
更新日期:1999-07-01 00:00:00
abstract::Although phototrophic microbial communities are important components of soils in arid and semi-arid ecosystems around the world, the knowledge of their taxonomic composition and dependency on soil chemistry and vegetation is still fragmentary. We studied the abundance and the diversity of cyanobacteria and eukaryotic ...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/s00248-011-9878-8
更新日期:2011-08-01 00:00:00
abstract::Owing to their ubiquitous presence and ability to act as primary or opportunistic pathogens, Vibrio species greatly contribute to the diversity and evolution of marine ecosystems. This study was aimed at unveiling the cellular strategies enabling the marine gammaproteobacterium Vibrio harveyi to adapt and persist in n...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/s00248-015-0614-7
更新日期:2015-10-01 00:00:00
abstract::Several Mesorhizobium species are able to induce effective nodules in chickpea, one of the most important legumes worldwide. Our aims were to examine the biogeography of chickpea rhizobia, to search for a predominant species, and to identify the most efficient microsymbiont, considering Portugal as a case study. One h...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/s00248-009-9536-6
更新日期:2009-11-01 00:00:00
abstract::Lasallia hispanica, Parmelia omphalodes, and Cornicularia normoerica, saxicolous thalli growing on granite, show a close relationship with other lichens and microorganisms living in the lithic substrate beneath them. The lithobiontic community is an accumulation of microorganisms at an interface forming a biofilm, whi...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/s00248-001-1028-2
更新日期:2002-01-01 00:00:00
abstract::Cell growth and division of the ciliateTetrahymena corlissi were examined upon refeeding after prolonged starvation of up to 12 days. Division did not automatically occur when a certain critical cell size was reached. Rather, it varied both with the nutritional history of the cell and the nutrient conditions in which ...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/BF02011248
更新日期:1987-03-01 00:00:00
abstract::The effect of salinity on prokaryotic community diversity in Abijata-Shalla Soda Ash Concentration Pond system was investigated by using high-throughput 16S rRNA gene 454 pyrosequencing. Surface water and brine samples from five sites spanning a salinity range of 3.4 % (Lake Abijata) to 32 % (SP230F, crystallizer pond...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/s00248-015-0675-7
更新日期:2016-02-01 00:00:00
abstract::Energy redistribution between growth and maintenance in salt-stressed cells is especially important for bacteria living in estuarine environments. In this study, Gram-negative bacterium Vibrio sp. DSM14379, isolated from the estuarine waters of the northern Adriatic Sea, was grown aerobically in a peptone-yeast extrac...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/s00248-011-9870-3
更新日期:2011-07-01 00:00:00
abstract::Methods have been explored for detection of methylotrophs in natural samples, using environmental primers based on genes involved in the tetrahydromethanopterin (H4MPT)-linked C1 transfer pathway. The underlying hypotheses were that the H4MPT-linked pathway is an ancient methylotrophy pathway, based on gene divergence...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/s00248-004-0212-6
更新日期:2004-11-01 00:00:00
abstract::At Iron Mountain, CA, there is an extreme occurrence of acid mine drainage (AMD). This is a result of past mining activity that has exposed a sulfide ore body to weathering and microbial activity. This study presents seven new oligonucleotide probes for the detection of microorganisms at this AMD site by fluorescent i...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/s002480000063
更新日期:2001-02-01 00:00:00
abstract::The effect of carbon∶nitrogen∶phosphorus (C∶N∶P) ratio of organic substrates on the regeneration of ammonium and phosphate was investigated by growing natural assemblages of freshwater bacteria in mineral media supplemented with the simple organic C, N, and P sources (glucose, asparagine, and sodium glycerophosphate, ...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/BF02017167
更新日期:1990-05-01 00:00:00
abstract::The effect of freeze-thaw (FT) cycles on Arctic tundra soil bacterial community was studied in laboratory microcosms. FT-induced changes to the bacterial community were followed over a 60-day period by terminal restriction fragment length polymorphism (T-RFLP) profiles of amplified 16S rRNA genes and reverse transcrib...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/s00248-009-9516-x
更新日期:2009-10-01 00:00:00
abstract::Bacterial symbionts on frog skin can reduce the growth of the chytrid fungus Batrachochytrium dendrobatidis (Bd) through production of inhibitory metabolites. Bacteria can be effective at increasing the resistance of amphibians to chytridiomycosis when added to amphibian skin, and isolates can be screened for producti...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/s00248-015-0701-9
更新日期:2016-01-01 00:00:00
abstract::Bisphenol A (BPA) is a common ingredient in plastic wares and epoxy resins that are essential for our daily life. Despite the obvious benefits, BPA may act as an environmental endocrine disruptor, causing metabolic, reproductive, and/or developmental consequences and diseases in humans and other organisms. Although pr...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/s00248-018-1263-4
更新日期:2019-04-01 00:00:00
abstract::In this work, we studied the ecological interactions between grape berry microorganisms and Drosophila sp. flies involved in sour rot disease during grape ripening. After veráison the total microbial counts of grape berries affected by sour rot increased from about 2 log CFU/g of berries to more than 7 log CFU/g. Berr...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/s00248-012-0041-y
更新日期:2012-08-01 00:00:00
abstract::Photosynthetic carbon fixation by phytoplankton is a key component of the global carbon cycle. Our understanding of the types of picoplankton and ultraphytoplankton involved in this process is evolving. However, mechanisms of regulation of photosynthetic carbon fixation in the oceans are poorly understood. All phytopl...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/BF00183060
更新日期:1996-11-01 00:00:00
abstract::Although ammonia-oxidizing bacteria (AOB) are likely to play a key role in the soil nitrogen cycle, we have only a limited understanding of how the diversity and composition of soil AOB communities change across ecosystem types. We examined 23 soils collected from across North America and used sequence-based analyses ...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/s00248-009-9517-9
更新日期:2009-08-01 00:00:00
abstract::The human gut microbiota is a complex system that is essential to the health of the host. Increasing evidence suggests that the gut microbiota may play an important role in the pathogenesis of colorectal cancer (CRC). In this study, we used pyrosequencing of the 16S rRNA gene V3 region to characterize the fecal microb...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/s00248-013-0245-9
更新日期:2013-08-01 00:00:00
abstract::High specific activity(14)C-labeled glucose, succinate, acetate, salicylate, and amino acids were used to examine carbon metabolism by the microbial community of Pahokee muck (aLithic medisaprist), a drained, cultivated soil of the Florida Everglades. Variations in carbon oxidation were observed from the end of the we...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/BF02020340
更新日期:1980-12-01 00:00:00
abstract::Bees forage for pollen and nectar at flowers but simultaneously acquire pathogenic, commensal, and likely beneficial microbes from these same flowers. Characterizing pollen usage of wild bees is therefore crucial to their conservation yet remains a challenging task. To understand pollen usage across landscapes and how...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/s00248-018-1232-y
更新日期:2019-02-01 00:00:00
abstract::Bacterioplankton community composition was studied in 12 lakes in three different geographic regions in Scandinavia using denaturing gradient gel electrophoresis (DGGE) and sequencing of 16S rDNA. Area-specific abundant taxa were found in the lakes in two of the regions. In the region of Uppland the lakes had an alpha...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/s00248-002-0007-6
更新日期:2002-07-01 00:00:00
abstract::The anaerobic degradation ofp-cresol was studied with one sediment source under three reducing conditions-denitrifying, sulfidogenic, and methanogenic. Loss ofp-cresol (1 mM) in all the anaerobic systems took initially 3 to 4 weeks. In acclimated culturesp-cresol was degraded in less than a week.p-Cresol was completel...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/BF02543873
更新日期:1990-12-01 00:00:00
abstract::An in situ colonization assay was performed to study the early stages of biofilm formation in Rio Tinto (SW, Spain), an extremely acidic environment (pH ca. 2). Eukaryotic assemblages were monitored at monthly intervals for 1 year. Diversity, colonization rates, and seasonal variations were analyzed. Structural featur...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/s00248-006-9092-2
更新日期:2007-02-01 00:00:00
abstract::Many sponges host abundant and active microbial communities that may play a role in the uptake of dissolved organic matter (DOM) by the sponge holobiont, although the mechanism of DOM uptake and metabolism is uncertain. Bulk and compound-specific isotopic analysis of whole sponge, isolated sponge cells, and isolated s...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/s00248-019-01410-x
更新日期:2020-02-01 00:00:00
abstract::Mediterranean forests own distinct characteristics resulting from climate, soil, and vegetation that affect soil microbial communities' assembly and their associated functions. We initiated a multi-scalar analysis of environmental drivers of soil functioning to (1) identify pertinent factorial scales and (2) determine...
journal_title:Microbial ecology
pub_type: 杂志文章
doi:10.1007/s00248-020-01518-5
更新日期:2020-10-01 00:00:00