Utility of environmental primers targeting ancient enzymes: methylotroph detection in Lake Washington.

abstract：:Thymidine incorporation into DNA is widely used to estimate rates of bacterial growth and secondary production in aquatic systems. The procedure requires the use of several conversion factors and assumptions to convert rates of thymidine uptake to rates of carbon production. Perhaps the most controversial of the conve...

journal_title：Microbial ecology

authors： Chrzanowski TH,Simek K,Sada RH,Williams S

更新日期：1993-03-01 00:00:00

abstract：:Denitrifying bacteria is a driver of nitrogen removal process in wastewater treatment ecosystem. However, the geographical characteristics of denitrifying bacterial communities associated with activated sludge from diverse wastewater treatment plants (WWTPs) are still unclear. Here, quantitative PCR and next-generatio...

journal_title：Microbial ecology

authors： Zhang H,Feng J,Chen S,Zhao Z,Li B,Wang Y,Jia J,Li S,Wang Y,Yan M,Lu K,Hao H

更新日期：2019-02-01 00:00:00

abstract：:Different experiments have estimated that the contribution of biological nitrogen fixation (BNF) is largely variable among sugarcane cultivars. Which bacteria are the most important in sugarcane-associated BNF is unknown. However, Gluconacetobacter diazotrophicus has been suggested as a strong candidate responsible fo...

journal_title：Microbial ecology

authors： Muñoz-Rojas J,Caballero-Mellado J

更新日期：2003-11-01 00:00:00

abstract：:This study is aimed to assess the formation of photosynthetic biofilms on and within different natural stone materials, and to analyse their biogeophysical and biogeochemical deterioration potential. This was performed by means of artificial colonisation under laboratory conditions during 3 months. Monitoring of micro...

journal_title：Microbial ecology

authors： Miller AZ,Rogerio-Candelera MA,Laiz L,Wierzchos J,Ascaso C,Sequeira Braga MA,Hernández-Mariné M,Maurício A,Dionísio A,Macedo MF,Saiz-Jimenez C

更新日期：2010-07-01 00:00:00

abstract：:Selective inhibition (SI) has been routinely used to differentiate the contributions of bacteria and fungi to soil ecological processes. SI experiments typically measured rapid responses within hours since the addition of inhibitor, but the long-term effects of selective biocides on microbial community composition and...

journal_title：Microbial ecology

authors： Pan Y,Wu Y,Li X,Zeng J,Lin X

更新日期：2019-11-01 00:00:00

abstract：:Dialysis bags were used to examine the impact of predation and viral lysis on prokaryotic community composition (PCC) over a 5-day experiment in the oligomesotrophic Lake Pavin (France). The impact of the different predator communities (protists and metazoans) of prokaryotes was estimated by water fractionation (<5 mi...

journal_title：Microbial ecology

authors： Jardillier L,Bettarel Y,Richardot M,Bardot C,Amblard C,Sime-Ngando T,Debroas D

更新日期：2005-11-01 00:00:00

abstract：:Scanning electron microscopy and fluorescence microscopy after scanning with DAPI indicated that the skin mucus of the cornetfish contained large numbers of bacteria, 4 × 10(8) per cm3. However, viable counts yielded only 2 × 104 per cm(3). Twelve bacterial strains were isolated directly from the mucus and another ten...

journal_title：Microbial ecology

authors： Bernadsky G,Rosenberg E

更新日期：1992-07-01 00:00:00

abstract：:Conjugal transfer of a derivative of the RP4 plasmid between Pseudomonas fluorescens AS12 and Serratia plymuthica RF7 was compared in the rhizosphere of pea, wheat, and barley and related to the metabolic activity of the bacteria. To obtain a reliable measure of transfer, which allowed comparison of results between ex...

journal_title：Microbial ecology

authors： Schwaner NE,Kroer N

更新日期：2001-10-01 00:00:00

abstract：:Members of the ant tribe Camponotini have coevolved with Blochmannia, an obligate intracellular bacterial mutualist. This endosymbiont lives within host bacteriocyte cells that line the ant midgut, undergoes maternal transmission from host queens to offspring, and contributes to host nutrition via nitrogen recycling a...

journal_title：Microbial ecology

authors： Fan Y,Wernegreen JJ

更新日期：2013-10-01 00:00:00

abstract：:The capybara (Hydrochoerus hydrochaeris) is the world's largest living rodent. Native to South America, this hindgut fermenter is herbivorous and coprophagous and uses its enlarged cecum to digest dietary plant material. The microbiota of specialized hindgut fermenters has remained largely unexplored. The aim of this ...

journal_title：Microbial ecology

authors： García-Amado MA,Godoy-Vitorino F,Piceno YM,Tom LM,Andersen GL,Herrera EA,Domínguez-Bello MG

更新日期：2012-05-01 00:00:00

abstract：:The growth rate or numerical response of five species of bactivorous ciliates to the abundance ofEnterobacter aerogenes was examined in monoxenic culture. The ciliatesColpidium campylum, C. colpoda, Glaucoma scintillons, G. frontata, andCyclidium glaucoma were isolated from a small pond. Four were grown in shaken cult...

journal_title：Microbial ecology

authors： Taylor WD

更新日期：1977-09-01 00:00:00

abstract：:To date, little is known about the diazotrophs in freshwater ecosystems. In this study, we examined the diversity, abundance, and distribution of the diazotrophic community in the deep oligotrophic Lake Fuxian using high-throughput sequencing and quantitative polymerase chain reaction of nifH genes. Our results showed...

journal_title：Microbial ecology

authors： Wang L,Xing P,Li H,Zhou L,Wu QL

更新日期：2020-05-01 00:00:00

abstract：:Understanding the role of microbiota as reproductive barriers or sources of adaptive novelty in the fundamental biological phenomenon of speciation is an exciting new challenge necessitating exploration of microbiota variation in wild interbreeding species. We focused on two interbreeding cyprinid species, Chondrostom...

journal_title：Microbial ecology

authors： Guivier E,Martin JF,Pech N,Ungaro A,Chappaz R,Gilles A

更新日期：2018-04-01 00:00:00

abstract：:Unicellular microalgae generally grow in the presence of bacteria, particularly when they are farmed massively. This study analyzes the bacteria associated with mass culture of Botryococcus braunii: both the planktonic bacteria in the water column and those forming biofilms adhered to the surface of the microalgal cel...

journal_title：Microbial ecology

authors： Rivas MO,Vargas P,Riquelme CE

更新日期：2010-10-01 00:00:00

abstract：:We investigated if the plant growth promoting fungus Trichoderma harzianum Rifai 1295-22 (also known as "T22") could be used to enhance the establishment and growth of crack willow (Salix fragilis) in a soil containing no organic or metal pollutants and in a metal-contaminated soil by comparing this fungus with nonino...

journal_title：Microbial ecology

authors： Adams P,De-Leij FA,Lynch JM

更新日期：2007-08-01 00:00:00

abstract：:Many insects harbor specific bacteria in their digestive tract, and these gut microbiota often play important roles in digestion and nutrient provisioning. While it is common for a given insect species to harbor a representative gut microbial community as a population, how this community is acquired and maintained fro...

journal_title：Microbial ecology

authors： Geib SM,Jimenez-Gasco Mdel M,Carlson JE,Tien M,Jabbour R,Hoover K

更新日期：2009-07-01 00:00:00

abstract：:Symbioses between prokaryotes and microbial eukaryotes, particularly ciliated protists, have been studied for a long time. Nevertheless, researchers have focused only on a few host genera and species, mainly due to difficulties in cultivating the hosts, and usually have considered a single symbiont at a time. Here, we...

journal_title：Microbial ecology

authors： Rossi A,Bellone A,Fokin SI,Boscaro V,Vannini C

更新日期：2019-07-01 00:00:00

abstract：:The predatory activity of bdellovibrios is affected by various environmental pollutants such as detergents, heavy metals, and pesticides. This was shown in a two-membered system ofBdellovibrio andPhotobacterium, in which the effect of the predator on the bioluminescence of the prey indicated the activity of the former...

journal_title：Microbial ecology

authors： Varon M,Shilo M

更新日期：1981-06-01 00:00:00

abstract：:The MHV-68 (designed as Murid herpesvirus 4 (MuHV 4) strain 68) isolated from two rodents, Myodes glareolus and Apodemus flavicollis, is considered as a natural pathogen of free-living murid rodents. Recently, the detection of MHV antibodies in the blood of animals living in the same biotope as MHV-infected mice has s...

journal_title：Microbial ecology

authors： Ficová M,Betáková T,Pančík P,Václav R,Prokop P,Halásová Z,Kúdelová M

更新日期：2011-11-01 00:00:00

abstract：:Intraterrestrial waters harbor microbial communities being extensively studied to understand microbial processes underlying subsurface ecosystem functioning. This paper provides the results of an investigation on the microbiomes of unique, subsurface sulfidic waters associated with Upper Jurassic, Cretaceous, and Mioc...

journal_title：Microbial ecology

authors： Deja-Sikora E,Gołębiewski M,Kalwasińska A,Krawiec A,Kosobucki P,Walczak M

更新日期：2019-07-01 00:00:00

abstract：:Next-generation sequencing has increased the coverage of microbial diversity surveys by orders of magnitude, but differentiating artifacts from rare environmental sequences remains a challenge. Clustering 16S rRNA sequences into operational taxonomic units (OTUs) organizes sequence data into groups of 97 % identity, h...

journal_title：Microbial ecology

authors： Patin NV,Kunin V,Lidström U,Ashby MN

更新日期：2013-04-01 00:00:00

abstract：:The effect of freeze-thaw (FT) cycles on Arctic tundra soil bacterial community was studied in laboratory microcosms. FT-induced changes to the bacterial community were followed over a 60-day period by terminal restriction fragment length polymorphism (T-RFLP) profiles of amplified 16S rRNA genes and reverse transcrib...

journal_title：Microbial ecology

authors： Männistö MK,Tiirola M,Häggblom MM

更新日期：2009-10-01 00:00:00

abstract：:Staphylococcus aureus, an opportunistic pathogen member of the nasal and skin microbiota, can also be found in human oral samples and has been linked to infectious diseases of the oral cavity. As the nasal and oral cavities are anatomically connected, it is currently unclear whether S. aureus can colonize the oral cav...

journal_title：Microbial ecology

authors： Lima BP,Hu LI,Vreeman GW,Weibel DB,Lux R

更新日期：2019-08-01 00:00:00

abstract：:Owing to their ubiquitous presence and ability to act as primary or opportunistic pathogens, Vibrio species greatly contribute to the diversity and evolution of marine ecosystems. This study was aimed at unveiling the cellular strategies enabling the marine gammaproteobacterium Vibrio harveyi to adapt and persist in n...

journal_title：Microbial ecology

authors： Kaberdin VR,Montánchez I,Parada C,Orruño M,Arana I,Barcina I

更新日期：2015-10-01 00:00:00

abstract：:Microorganisms play a crucial role in lignocellulosic degradation. Many enriched microbial communities have demonstrated to reach functional and structural stability with effective degrading capacities of industrial interest. These microbial communities are typically composed by only few dominant species and a high nu...

journal_title：Microbial ecology

authors： Puentes-Téllez PE,Salles JF

更新日期：2020-02-01 00:00:00

abstract：:Bisphenol A (BPA) is a common ingredient in plastic wares and epoxy resins that are essential for our daily life. Despite the obvious benefits, BPA may act as an environmental endocrine disruptor, causing metabolic, reproductive, and/or developmental consequences and diseases in humans and other organisms. Although pr...

journal_title：Microbial ecology

authors： Oh S,Choi D

更新日期：2019-04-01 00:00:00

abstract：:Microcosms may potentially be used as tools for evaluating the fate and effects of genetically engineered microorganisms released into the environment. Extrapolation of data to the field, however, requires that the correspondence between microcosm and field is known. Microbial trophic interactions within the microbial...

journal_title：Microbial ecology

authors： Kroer N,Coffin RB

更新日期：1992-06-01 00:00:00

abstract：:A significant number of viable colony-forming bacteria were recovered from deep-ocean bottom water samples passed through a 0.45μm filter. However, these bacteria small enough to pass through a 0.45μm membrane filter and termed "filterable bacteria" were less abundant in open-ocean surface water and coastal water samp...

journal_title：Microbial ecology

authors： Tabor PS,Ohwada K,Colwell RR

更新日期：1981-03-01 00:00:00

abstract：:Associations between soil properties and Pythium groups on soybean roots were investigated in 83 commercial soybean fields in North Dakota. A data set containing 2877 isolates of Pythium which included 26 known spp. and 1 unknown spp. and 13 soil properties from each field were analyzed. A Pearson correlation analysis...

journal_title：Microbial ecology

authors： Zitnick-Anderson KK,Norland JE,Del Río Mendoza LE,Fortuna AM,Nelson BD Jr

更新日期：2017-10-01 00:00:00

abstract：:The abundance and biomass of heterotrophic flagellates were estimated monthly in sediments of Botany Bay during March 1999-February 2000. The annual abundance and biomass were in the ranges of 0.46-4.70 x 10(5) cells/cm(3) and of 0.30-8.61 micro g C/cm(3), respectively. The majority of heterotrophic flagellates (93-10...

journal_title：Microbial ecology

authors： Lee WJ,Patterson DJ

更新日期：2002-05-01 00:00:00