Comparative secretome analysis of Trichoderma asperellum S4F8 and Trichoderma reesei Rut C30 during solid-state fermentation on sugarcane bagasse.

Abstract:

BACKGROUND:The lignocellulosic enzymes of Trichoderma species have received particular attention with regard to biomass conversion to biofuels, but the production cost of these enzymes remains a significant hurdle for their commercial application. In this study, we quantitatively compared the lignocellulolytic enzyme profile of a newly isolated Trichoderma asperellum S4F8 strain with that of Trichoderma reesei Rut C30, cultured on sugarcane bagasse (SCB) using solid-state fermentation (SSF). RESULTS:Comparison of the lignocellulolytic enzyme profiles of S4F8 and Rut C30 showed that S4F8 had significantly higher hemicellulase and β-glucosidase enzyme activities. Liquid chromatography tandem mass spectrometry analysis of the two fungal secretomes enabled the detection of 815 proteins in total, with 418 and 397 proteins being specific for S4F8 and Rut C30, respectively, and 174 proteins being common to both strains. In-depth analysis of the associated biological functions and the representation of glycoside hydrolase family members within the two secretomes indicated that the S4F8 secretome contained a higher diversity of main and side chain hemicellulases and β-glucosidases, and an increased abundance of some of these proteins compared with the Rut C30 secretome. CONCLUSIONS:In SCB SSF, T. asperellum S4F8 produced a more complex lignocellulolytic cocktail, with enhanced hemicellulose and cellobiose hydrolysis potential, compared with T. reesei Rut C30. This bodes well for the development of a more cost-effective and efficient lignocellulolytic enzyme cocktail from T. asperellum for lignocellulosic feedstock hydrolysis.

journal_name

Biotechnol Biofuels

authors

Marx IJ,van Wyk N,Smit S,Jacobson D,Viljoen-Bloom M,Volschenk H

doi

10.1186/1754-6834-6-172

subject

Has Abstract

pub_date

2013-11-29 00:00:00

pages

172

issue

1

issn

1754-6834

pii

1754-6834-6-172

journal_volume

6

pub_type

杂志文章
  • Proteomic and metabolomic analysis of the cellular biomarkers related to inhibitors tolerance in Zymomonas mobilis ZM4.

    abstract:Background:Toxic compounds present in both the hydrolysate and pyrolysate of lignocellulosic biomass severely hinder the further conversion of lignocellulose-derived fermentable sugars into useful chemicals by common biocatalysts like Zymomonas mobilis, which has remarkable advantages over yeast. Although the extra det...

    journal_title:Biotechnology for biofuels

    pub_type: 杂志文章

    doi:10.1186/s13068-018-1287-5

    authors: Chang D,Yu Z,Ul Islam Z,French WT,Zhang Y,Zhang H

    更新日期:2018-10-16 00:00:00

  • Genomic comparison of Clostridium species with the potential of utilizing red algal biomass for biobutanol production.

    abstract:Background:Sustainable biofuels, which are widely considered as an attractive alternative to fossil fuels, can be generated by utilizing various biomass from the environment. Marine biomass, such as red algal biomass, is regarded as one potential renewable substrate source for biofuels conversion due to its abundance o...

    journal_title:Biotechnology for biofuels

    pub_type: 杂志文章

    doi:10.1186/s13068-018-1044-9

    authors: Sun C,Zhang S,Xin F,Shanmugam S,Wu YR

    更新日期:2018-02-15 00:00:00

  • Combined inactivation of the Clostridium cellulolyticum lactate and malate dehydrogenase genes substantially increases ethanol yield from cellulose and switchgrass fermentations.

    abstract:BACKGROUND:The model bacterium Clostridium cellulolyticum efficiently degrades crystalline cellulose and hemicellulose, using cellulosomes to degrade lignocellulosic biomass. Although it imports and ferments both pentose and hexose sugars to produce a mixture of ethanol, acetate, lactate, H2 and CO2, the proportion of ...

    journal_title:Biotechnology for biofuels

    pub_type: 杂志文章

    doi:10.1186/1754-6834-5-2

    authors: Li Y,Tschaplinski TJ,Engle NL,Hamilton CY,Rodriguez M Jr,Liao JC,Schadt CW,Guss AM,Yang Y,Graham DE

    更新日期:2012-01-04 00:00:00

  • Improving pentose fermentation by preventing ubiquitination of hexose transporters in Saccharomyces cerevisiae.

    abstract:BACKGROUND:Engineering of the yeast Saccharomyces cerevisiae for improved utilization of pentose sugars is vital for cost-efficient cellulosic bioethanol production. Although endogenous hexose transporters (Hxt) can be engineered into specific pentose transporters, they remain subjected to glucose-regulated protein deg...

    journal_title:Biotechnology for biofuels

    pub_type: 杂志文章

    doi:10.1186/s13068-016-0573-3

    authors: Nijland JG,Vos E,Shin HY,de Waal PP,Klaassen P,Driessen AJ

    更新日期:2016-07-26 00:00:00

  • Astaxanthin overproduction in yeast by strain engineering and new gene target uncovering.

    abstract:Background:Astaxanthin is a natural carotenoid pigment with tremendous antioxidant activity and great commercial value. Microbial production of astaxanthin via metabolic engineering has become a promising alternative. Although great efforts have been conducted by tuning the heterologous modules and precursor pools, the...

    journal_title:Biotechnology for biofuels

    pub_type: 杂志文章

    doi:10.1186/s13068-018-1227-4

    authors: Jin J,Wang Y,Yao M,Gu X,Li B,Liu H,Ding M,Xiao W,Yuan Y

    更新日期:2018-08-23 00:00:00

  • Deletion of meso-2,3-butanediol dehydrogenase gene budC for enhanced D-2,3-butanediol production in Bacillus licheniformis.

    abstract:BACKGROUND:D-2,3-butanediol has many industrial applications such as chiral reagents, solvents, anti-freeze agents, and low freezing point fuels. Traditional D-2,3-butanediol producing microorganisms, such as Klebsiella pneumonia and K. xoytoca, are pathogenic and not capable of producing D-2,3-butanediol at high optic...

    journal_title:Biotechnology for biofuels

    pub_type: 杂志文章

    doi:10.1186/1754-6834-7-16

    authors: Qi G,Kang Y,Li L,Xiao A,Zhang S,Wen Z,Xu D,Chen S

    更新日期:2014-01-29 00:00:00

  • Development and characterization of acidic-pH-tolerant mutants of Zymomonas mobilis through adaptation and next-generation sequencing-based genome resequencing and RNA-Seq.

    abstract:Background:Acid pretreatment is a common strategy used to break down the hemicellulose component of the lignocellulosic biomass to release pentoses, and a subsequent enzymatic hydrolysis step is usually applied to release hexoses from the cellulose. The hydrolysate after pretreatment and enzymatic hydrolysis containing...

    journal_title:Biotechnology for biofuels

    pub_type: 杂志文章

    doi:10.1186/s13068-020-01781-1

    authors: Yang Q,Yang Y,Tang Y,Wang X,Chen Y,Shen W,Zhan Y,Gao J,Wu B,He M,Chen S,Yang S

    更新日期:2020-08-13 00:00:00

  • Quantitative analysis of the effects of morphological changes on extracellular electron transfer rates in cyanobacteria.

    abstract:Background:Understanding the extracellular electron transport pathways in cyanobacteria is a major factor towards developing biophotovoltaics. Stressing cyanobacteria cells environmentally and then probing changes in physiology or metabolism following a significant change in electron transfer rates is a common approach...

    journal_title:Biotechnology for biofuels

    pub_type: 杂志文章

    doi:10.1186/s13068-020-01788-8

    authors: Okedi TI,Fisher AC,Yunus K

    更新日期:2020-08-26 00:00:00

  • Genome and methylome of the oleaginous diatom Cyclotella cryptica reveal genetic flexibility toward a high lipid phenotype.

    abstract:BACKGROUND:Improvement in the performance of eukaryotic microalgae for biofuel and bioproduct production is largely dependent on characterization of metabolic mechanisms within the cell. The marine diatom Cyclotella cryptica, which was originally identified in the Aquatic Species Program, is a promising strain of micro...

    journal_title:Biotechnology for biofuels

    pub_type: 杂志文章

    doi:10.1186/s13068-016-0670-3

    authors: Traller JC,Cokus SJ,Lopez DA,Gaidarenko O,Smith SR,McCrow JP,Gallaher SD,Podell S,Thompson M,Cook O,Morselli M,Jaroszewicz A,Allen EE,Allen AE,Merchant SS,Pellegrini M,Hildebrand M

    更新日期:2016-11-25 00:00:00

  • Insight into the role of α-arabinofuranosidase in biomass hydrolysis: cellulose digestibility and inhibition by xylooligomers.

    abstract:Background:α-l-Arabinofuranosidase (ARA), a debranching enzyme that can remove arabinose substituents from arabinoxylan and arabinoxylooligomers (AXOS), promotes the hydrolysis of the arabinoxylan fraction of biomass; however, the impact of ARA on the overall digestibility of cellulose is controversial. In this study, ...

    journal_title:Biotechnology for biofuels

    pub_type: 杂志文章

    doi:10.1186/s13068-019-1412-0

    authors: Xin D,Chen X,Wen P,Zhang J

    更新日期:2019-03-22 00:00:00

  • Enhanced rates of enzymatic saccharification and catalytic synthesis of biofuel substrates in gelatinized cellulose generated by trifluoroacetic acid.

    abstract:Background:The crystallinity of cellulose is a principal factor limiting the efficient hydrolysis of biomass to fermentable sugars or direct catalytic conversion to biofuel components. We evaluated the impact of TFA-induced gelatinization of crystalline cellulose on enhancement of enzymatic digestion and catalytic conv...

    journal_title:Biotechnology for biofuels

    pub_type: 杂志文章

    doi:10.1186/s13068-017-0999-2

    authors: Shiga TM,Xiao W,Yang H,Zhang X,Olek AT,Donohoe BS,Liu J,Makowski L,Hou T,McCann MC,Carpita NC,Mosier NS

    更新日期:2017-12-27 00:00:00

  • Deciphering lignocellulose deconstruction by the white rot fungus Irpex lacteus based on genomic and transcriptomic analyses.

    abstract:Background:Irpex lacteus is one of the most potent white rot fungi for biological pretreatment of lignocellulose for second biofuel production. To elucidate the underlying molecular mechanism involved in lignocellulose deconstruction, genomic and transcriptomic analyses were carried out for I. lacteus CD2 grown in subm...

    journal_title:Biotechnology for biofuels

    pub_type: 杂志文章

    doi:10.1186/s13068-018-1060-9

    authors: Qin X,Su X,Luo H,Ma R,Yao B,Ma F

    更新日期:2018-03-02 00:00:00

  • How does technology pathway choice influence economic viability and environmental impacts of lignocellulosic biorefineries?

    abstract:Background:The need for liquid fuels in the transportation sector is increasing, and it is essential to develop industrially sustainable processes that simultaneously address the tri-fold sustainability metrics of technological feasibility, economic viability, and environmental impacts. Biorefineries based on lignocell...

    journal_title:Biotechnology for biofuels

    pub_type: 杂志文章

    doi:10.1186/s13068-017-0959-x

    authors: Rajendran K,Murthy GS

    更新日期:2017-11-14 00:00:00

  • SSF of steam-pretreated wheat straw with the addition of saccharified or fermented wheat meal in integrated bioethanol production.

    abstract:BACKGROUND:Integration of second-generation (2G) bioethanol production with existing first-generation (1G) production may facilitate commercial production of ethanol from cellulosic material. Since 2G hydrolysates have a low sugar concentration and 1G streams often have to be diluted prior to fermentation, mixing of st...

    journal_title:Biotechnology for biofuels

    pub_type: 杂志文章

    doi:10.1186/1754-6834-6-169

    authors: Erdei B,Hancz D,Galbe M,Zacchi G

    更新日期:2013-11-29 00:00:00

  • Nitrogen-dependent coordination of cell cycle, quiescence and TAG accumulation in Chlamydomonas.

    abstract::Microalgae hold great promises as sustainable cellular factories for the production of alternative fuels, feeds, and biopharmaceuticals for human health. While the biorefinery approach for fuels along with the coproduction of high-value compounds with industrial, therapeutic, or nutraceutical applications have the pot...

    journal_title:Biotechnology for biofuels

    pub_type: 杂志文章,评审

    doi:10.1186/s13068-019-1635-0

    authors: Takeuchi T,Benning C

    更新日期:2019-12-23 00:00:00

  • Techno-economic potential of bioethanol from bamboo in China.

    abstract:BACKGROUND:Bamboo is potentially an interesting feedstock for advanced bioethanol production in China due to its natural abundance, rapid growth, perennial nature and low management requirements. Liquid hot water (LHW) pretreatment was selected as a promising technology to enhance sugar release from bamboo lignocellulo...

    journal_title:Biotechnology for biofuels

    pub_type: 杂志文章

    doi:10.1186/1754-6834-6-173

    authors: Littlewood J,Wang L,Turnbull C,Murphy RJ

    更新日期:2013-11-29 00:00:00

  • Metabolic engineering of Yarrowia lipolytica for thermoresistance and enhanced erythritol productivity.

    abstract:Background:Functional sugar alcohols have been widely used in the food, medicine, and pharmaceutical industries for their unique properties. Among these, erythritol is a zero calories sweetener produced by the yeast Yarrowia lipolytica. However, in wild-type strains, erythritol is produced with low productivity and yie...

    journal_title:Biotechnology for biofuels

    pub_type: 杂志文章

    doi:10.1186/s13068-020-01815-8

    authors: Wang N,Chi P,Zou Y,Xu Y,Xu S,Bilal M,Fickers P,Cheng H

    更新日期:2020-10-20 00:00:00

  • Lignolytic-consortium omics analyses reveal novel genomes and pathways involved in lignin modification and valorization.

    abstract:Background:Lignin is a heterogeneous polymer representing a renewable source of aromatic and phenolic bio-derived products for the chemical industry. However, the inherent structural complexity and recalcitrance of lignin makes its conversion into valuable chemicals a challenge. Natural microbial communities produce bi...

    journal_title:Biotechnology for biofuels

    pub_type: 杂志文章

    doi:10.1186/s13068-018-1073-4

    authors: Moraes EC,Alvarez TM,Persinoti GF,Tomazetto G,Brenelli LB,Paixão DAA,Ematsu GC,Aricetti JA,Caldana C,Dixon N,Bugg TDH,Squina FM

    更新日期:2018-03-22 00:00:00

  • Enzymatic synthesis of l-fucose from l-fuculose using a fucose isomerase from Raoultella sp. and the biochemical and structural analyses of the enzyme.

    abstract:Background:l-Fucose is a rare sugar with potential uses in the pharmaceutical, cosmetic, and food industries. The enzymatic approach using l-fucose isomerase, which interconverts l-fucose and l-fuculose, can be an efficient way of producing l-fucose for industrial applications. Here, we performed biochemical and struct...

    journal_title:Biotechnology for biofuels

    pub_type: 杂志文章

    doi:10.1186/s13068-019-1619-0

    authors: Kim IJ,Kim DH,Nam KH,Kim KH

    更新日期:2019-12-05 00:00:00

  • The difference in effective light penetration may explain the superiority in photosynthetic efficiency of attached cultivation over the conventional open pond for microalgae.

    abstract:BACKGROUND:The 'attached cultivation' technique for microalgae production, combining the immobilized biofilm technology with proper light dilution strategies, has shown improved biomass production and photosynthetic efficiency over conventional open-pond suspended cultures. However, how light is transferred and distrib...

    journal_title:Biotechnology for biofuels

    pub_type: 杂志文章

    doi:10.1186/s13068-015-0240-0

    authors: Wang J,Liu J,Liu T

    更新日期:2015-03-26 00:00:00

  • Raw starch conversion by Saccharomyces cerevisiae expressing Aspergillus tubingensis amylases.

    abstract:BACKGROUND:Starch is one of the most abundant organic polysaccharides available for the production of bio-ethanol as an alternative transport fuel. Cost-effective utilisation of starch requires consolidated bioprocessing (CBP) where a single microorganism can produce the enzymes required for hydrolysis of starch, and a...

    journal_title:Biotechnology for biofuels

    pub_type: 杂志文章

    doi:10.1186/1754-6834-6-167

    authors: Viktor MJ,Rose SH,van Zyl WH,Viljoen-Bloom M

    更新日期:2013-11-29 00:00:00

  • Production of xylooligosaccharides and monosaccharides from poplar by a two-step acetic acid and peroxide/acetic acid pretreatment.

    abstract:Background:Populus (poplar) tree species including hybrid varieties are considered as promising biomass feedstock for biofuels and biochemicals production due to their fast growing, short vegetative cycle, and widely distribution. In this work, poplar was pretreated with acetic acid (AC) to produce xylooligosaccharides...

    journal_title:Biotechnology for biofuels

    pub_type: 杂志文章

    doi:10.1186/s13068-019-1423-x

    authors: Wen P,Zhang T,Wang J,Lian Z,Zhang J

    更新日期:2019-04-15 00:00:00

  • Structure-based directed evolution improves S. cerevisiae growth on xylose by influencing in vivo enzyme performance.

    abstract:Background:Efficient bioethanol production from hemicellulose feedstocks by Saccharomyces cerevisiae requires xylose utilization. Whereas S. cerevisiae does not metabolize xylose, engineered strains that express xylose isomerase can metabolize xylose by converting it to xylulose. For this, the type II xylose isomerase ...

    journal_title:Biotechnology for biofuels

    pub_type: 杂志文章

    doi:10.1186/s13068-019-1643-0

    authors: Lee M,Rozeboom HJ,Keuning E,de Waal P,Janssen DB

    更新日期:2020-01-11 00:00:00

  • Pre-concentration of microalga Euglena gracilis by alkalescent pH treatment and flocculation mechanism of Ca3(PO4)2, Mg3(PO4)2, and derivatives.

    abstract:Background:Microalgae are widely be used in carbon sequestration, food supplements, natural pigments, polyunsaturated fatty acids, biofuel applications, and wastewater treatment. However, the difficulties incurred in algae cell separation and harvesting, and the exorbitant cost required to overcome these challenges, ar...

    journal_title:Biotechnology for biofuels

    pub_type: 杂志文章

    doi:10.1186/s13068-020-01734-8

    authors: Wu M,Li J,Qin H,Lei A,Zhu H,Hu Z,Wang J

    更新日期:2020-05-29 00:00:00

  • From grass to gas: microbiome dynamics of grass biomass acidification under mesophilic and thermophilic temperatures.

    abstract:BACKGROUND:Separating acidification and methanogenic steps in anaerobic digestion processes can help to optimize the process and contribute to producing valuable sub-products such as methane, hydrogen and organic acids. However, the full potential of this technology has not been fully explored yet. To assess the underl...

    journal_title:Biotechnology for biofuels

    pub_type: 杂志文章

    doi:10.1186/s13068-017-0859-0

    authors: Abendroth C,Simeonov C,Peretó J,Antúnez O,Gavidia R,Luschnig O,Porcar M

    更新日期:2017-07-03 00:00:00

  • Understanding the structural characteristics of water-soluble phenolic compounds from four pretreatments of corn stover and their inhibitory effects on enzymatic hydrolysis and fermentation.

    abstract:Background:For bioethanol production from lignocellulosic biomass, phenolics derived from pretreatment have been generally considered as highly inhibitory towards enzymatic hydrolysis and fermentation. As phenolics are produced from lignin degradation during pretreatment, it is likely that the pretreatment will exert a...

    journal_title:Biotechnology for biofuels

    pub_type: 杂志文章

    doi:10.1186/s13068-020-01686-z

    authors: Chen X,Zhai R,Li Y,Yuan X,Liu ZH,Jin M

    更新日期:2020-03-11 00:00:00

  • High cell density production of multimethyl-branched long-chain esters in Escherichia coli and determination of their physicochemical properties.

    abstract:BACKGROUND:Microbial synthesis of oleochemicals derived from native fatty acid (FA) metabolism has presented significant advances in recent years. Even so, native FA biosynthetic pathways often provide a narrow variety of usually linear hydrocarbons, thus yielding end products with limited structural diversity. To over...

    journal_title:Biotechnology for biofuels

    pub_type: 杂志文章

    doi:10.1186/s13068-016-0631-x

    authors: Menendez-Bravo S,Roulet J,Sabatini M,Comba S,Dunn R,Gramajo H,Arabolaza A

    更新日期:2016-10-14 00:00:00

  • Parallel metatranscriptome analyses of host and symbiont gene expression in the gut of the termite Reticulitermes flavipes.

    abstract:BACKGROUND:Termite lignocellulose digestion is achieved through a collaboration of host plus prokaryotic and eukaryotic symbionts. In the present work, we took a combined host and symbiont metatranscriptomic approach for investigating the digestive contributions of host and symbiont in the lower termite Reticulitermes ...

    journal_title:Biotechnology for biofuels

    pub_type: 杂志文章

    doi:10.1186/1754-6834-2-25

    authors: Tartar A,Wheeler MM,Zhou X,Coy MR,Boucias DG,Scharf ME

    更新日期:2009-10-15 00:00:00

  • Cellulose accessibility limits the effectiveness of minimum cellulase loading on the efficient hydrolysis of pretreated lignocellulosic substrates.

    abstract:: A range of lignocellulosic feedstocks (including agricultural, softwood and hardwood substrates) were pretreated with either sulfur dioxide-catalyzed steam or an ethanol organosolv procedure to try to establish a reliable assessment of the factors governing the minimum protein loading that could be used to achieve ef...

    journal_title:Biotechnology for biofuels

    pub_type: 杂志文章

    doi:10.1186/1754-6834-4-3

    authors: Arantes V,Saddler JN

    更新日期:2011-02-10 00:00:00

  • De novo transcriptome sequencing and analysis revealed the molecular basis of rapid fat accumulation by black soldier fly (Hermetia illucens, L.) for development of insectival biodiesel.

    abstract:Background:Black soldier fly (BSF, Hermetia illucens L.) can efficiently degrade organic wastes and transform into a high fat containing insect biomass that could be used as feedstock for biodiesel production. Meanwhile, the molecular regulatory basis of fat accumulation by BSF is still unclear; it is necessary to iden...

    journal_title:Biotechnology for biofuels

    pub_type: 杂志文章

    doi:10.1186/s13068-019-1531-7

    authors: Zhu Z,Rehman KU,Yu Y,Liu X,Wang H,Tomberlin JK,Sze SH,Cai M,Zhang J,Yu Z,Zheng J,Zheng L

    更新日期:2019-08-09 00:00:00