Rhythmic ring-ring stacking drives the circadian oscillator clockwise.

Abstract:

:The oscillator of the circadian clock of cyanobacteria is composed of three proteins, KaiA, KaiB, and KaiC, which together generate a self-sustained ∼24-h rhythm of phosphorylation of KaiC. The mechanism propelling this oscillator has remained elusive, however. We show that stacking interactions between the CI and CII rings of KaiC drive the transition from the phosphorylation-specific KaiC-KaiA interaction to the dephosphorylation-specific KaiC-KaiB interaction. We have identified the KaiB-binding site, which is on the CI domain. This site is hidden when CI domains are associated as a hexameric ring. However, stacking of the CI and CII rings exposes the KaiB-binding site. Because the clock output protein SasA also binds to CI and competes with KaiB for binding, ring stacking likely regulates clock output. We demonstrate that ADP can expose the KaiB-binding site in the absence of ring stacking, providing an explanation for how it can reset the clock.

authors

Chang YG,Tseng R,Kuo NW,LiWang A

doi

10.1073/pnas.1211508109

subject

Has Abstract

pub_date

2012-10-16 00:00:00

pages

16847-51

issue

42

eissn

0027-8424

issn

1091-6490

pii

1211508109

journal_volume

109

pub_type

杂志文章
  • Quantitative effects of antihydrophobic agents on binding constants and solubilities in water.

    abstract::The effects of urea and of guanidinium chloride on binding constants in water for 6-(4-tert-butylanilino)-naphthalene-2-sulfonate and of bis(p-tert-butylphenyl) phosphate binding to beta-cyclodextrin and to N,N'-bis(6-beta-cyclo-dextrinyl)imidazolium ion have been determined. Their effects on the water solubility of p...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.89.15.6916

    authors: Breslow R,Halfon S

    更新日期:1992-08-01 00:00:00

  • Effect of anti-HLA antisera on macrophage-T-cell interactions.

    abstract::Human T lymphocytes were shown to proliferate in response to tetanus toxoid antigen only in the presence of macrophages. This response was inhibited by anti-DRw but not by anti-HLA (A and B loci) antisera added to the cultures and by pretreatment of macrophages but not of T cells with anti-DRw antisera and complement....

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.76.8.4038

    authors: Geha RS,Milgrom H,Broff M,Alpert S,Martin S,Yunis EJ

    更新日期:1979-08-01 00:00:00

  • IA-2beta, but not IA-2, is induced by ghrelin and inhibits glucose-stimulated insulin secretion.

    abstract::Ghrelin is a newly discovered peptide and an endogenous ligand for growth hormone (GH) secretagogue (GHS) receptor. It has been shown to possess various central and peripheral effects, including GH secretion, food intake, and gastric and cardiac effects. Ghrelin and the GHS receptor are expressed also in pancreatic is...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0502470102

    authors: Doi A,Shono T,Nishi M,Furuta H,Sasaki H,Nanjo K

    更新日期:2006-01-24 00:00:00

  • Stimulation of DNA and protein synthesis in fetal-rat liver cells by serum from partially hepatectomized rats.

    abstract::Primary cultures of differentiated liver cells from fetal rats respond to serum from partially hepatectomized rats by an increased uptake of [(3)H]thymidine and [(3)H]leucine as compared with cultures incubated with normal rat serum. These findings are discussed in relation to the mechanism of induction of DNA synthes...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.69.2.374

    authors: Paul D,Leffert H,Sato G,Holley RW

    更新日期:1972-02-01 00:00:00

  • Calcitonin gene-related peptide: functional role in cerebrovascular regulation.

    abstract::Distribution studies disclosed that all major cerebral arteries and cortical arterioles of the cat were invested with fine varicose nerve fibers that contained calcitonin gene-related peptide (CGRP)-like immunoreactivity; the trigeminal ganglia likewise contained CGRP immunoreactivity. Sequential immunostaining with a...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.83.15.5731

    authors: McCulloch J,Uddman R,Kingman TA,Edvinsson L

    更新日期:1986-08-01 00:00:00

  • Changes in brain gene expression shared by scrapie and Alzheimer disease.

    abstract::We have isolated two recombinant cDNAs whose corresponding RNAs have an increased abundance in scrapie-infected hamster brain. DNA sequence analysis has shown that these two recombinants represent the genes for sulfated glycoprotein 2 and transferrin. The abundance of sulfated glycoprotein 2 RNA is increased in hippoc...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.86.18.7260

    authors: Duguid JR,Bohmont CW,Liu NG,Tourtellotte WW

    更新日期:1989-09-01 00:00:00

  • Nonheme iron proteins, XI. Some genetic aspects.

    abstract::Ferredoxin was isolated from individual Leucaena glauca trees, and the distribution of amino acids at three of the four sites of sequence heterogeneity was determined. The results indicated that the most probable causes of the observed microheterogeneity are the presence of either nonallelic nuclear genes or differing...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.63.4.1269

    authors: Benson AM,Yasunobu KT

    更新日期:1969-08-01 00:00:00

  • Cardioprotection from ischemia by a brief exposure to physiological levels of ethanol: role of epsilon protein kinase C.

    abstract::Recent epidemiological studies indicate beneficial effects of moderate ethanol consumption in ischemic heart disease. Most studies, however, focus on the effect of long-term consumption of ethanol. In this study, we determined whether brief exposure to ethanol immediately before ischemia also produces cardioprotection...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.96.22.12784

    authors: Chen CH,Gray MO,Mochly-Rosen D

    更新日期:1999-10-26 00:00:00

  • Development of a monoclonal antibody specifically reactive to gastrointestinal goblet cells.

    abstract::A mouse monoclonal antibody (7E6A5) of IgG isotype, reacting specifically with mucin-producing goblet cells of the human gastrointestinal tract, has been developed. 7E6A5 reacts by an ELISA with colonic protein eluted from a DEAE column. A screening by immunoperoxidase assay of 76 specimens from 19 different human tis...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.84.10.3425

    authors: Vecchi M,Sakamaki S,Diamond B,Novikoff AB,Novikoff PM,Das KM

    更新日期:1987-05-01 00:00:00

  • The role of chromosomal instability in tumor initiation.

    abstract::Chromosomal instability (CIN) is a defining characteristic of most human cancers. Mutation of CIN genes increases the probability that whole chromosomes or large fractions of chromosomes are gained or lost during cell division. The consequence of CIN is an imbalance in the number of chromosomes per cell (aneuploidy) a...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.202617399

    authors: Nowak MA,Komarova NL,Sengupta A,Jallepalli PV,Shih IeM,Vogelstein B,Lengauer C

    更新日期:2002-12-10 00:00:00

  • Association by hydrogen bonding of mononucleotides in aqueous solution.

    abstract::Evidence for hydrogen bonding between 5'-ribonucleotides in water has been obtained from a 220-MHz proton magnetic resonance study of nitrogenous protons. The amino groups of GMP, AMP, and CMP exhibit proton resonance lines which are somewhat broadened by proton exchange with the solvent at 0 degrees ; their downfield...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.69.8.2025

    authors: Raszka M,Kaplan NO

    更新日期:1972-08-01 00:00:00

  • Single-molecule FRET studies on the cotranscriptional folding of a thiamine pyrophosphate riboswitch.

    abstract::Because RNAs fold as they are being synthesized, their transcription rate can affect their folding. Here, we report the results of single-molecule fluorescence studies that characterize the ligand-dependent cotranscriptional folding of the Escherichia coli thiM riboswitch that regulates translation. We found that the ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1712983115

    authors: Uhm H,Kang W,Ha KS,Kang C,Hohng S

    更新日期:2018-01-09 00:00:00

  • Resting-state networks in the infant brain.

    abstract::In the absence of any overt task performance, it has been shown that spontaneous, intrinsic brain activity is expressed as systemwide, resting-state networks in the adult brain. However, the route to adult patterns of resting-state activity through neuronal development in the human brain is currently unknown. Therefor...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0704380104

    authors: Fransson P,Skiöld B,Horsch S,Nordell A,Blennow M,Lagercrantz H,Aden U

    更新日期:2007-09-25 00:00:00

  • Human sleep consolidates allergic responses conditioned to the environmental context of an allergen exposure.

    abstract::Allergies are highly prevalent, and allergic responses can be triggered even in the absence of allergens due to Pavlovian conditioning to a specific cue. Here we show in humans suffering from allergic rhinitis that merely reencountering the environmental context in which an allergen was administered a week earlier is ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1920564117

    authors: Besedovsky L,Benischke M,Fischer J,Yazdi AS,Born J

    更新日期:2020-05-19 00:00:00

  • Translocation of a functional protein by a voltage-dependent ion channel.

    abstract::The voltage-dependent gating of the colicin channel involves a substantial structural rearrangement that results in the transfer of about 35% of the 200 residues in its pore-forming domain across the membrane. This transfer appears to represent an unusual type of protein translocation that does not depend on a large, ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.022480199

    authors: Slatin SL,Nardi A,Jakes KS,Baty D,Duché D

    更新日期:2002-02-05 00:00:00

  • The age incidence of chronic myeloid leukemia can be explained by a one-mutation model.

    abstract::Chronic myeloid leukemia (CML) is associated with the Philadelphia chromosome, which arises by a reciprocal translocation between chromosomes 9 and 22 and harbors the BCR-ABL fusion oncogene. It is unknown whether any other mutations are needed for the chronic phase of the disease. The CML incidence increases as a fun...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0607006103

    authors: Michor F,Iwasa Y,Nowak MA

    更新日期:2006-10-03 00:00:00

  • Position-specific trapping of topoisomerase I-DNA cleavage complexes by intercalated benzo[a]- pyrene diol epoxide adducts at the 6-amino group of adenine.

    abstract::DNA topoisomerase I (top1) is the target of potent anticancer agents, including camptothecins and DNA intercalators, which reversibly stabilize (trap) top1 catalytic intermediates (cleavage complexes). The aim of the present study was to define the structural relationship between the site(s) of covalently bound interc...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.190312697

    authors: Pommier Y,Laco GS,Kohlhagen G,Sayer JM,Kroth H,Jerina DM

    更新日期:2000-09-26 00:00:00

  • Replicator degrees of freedom allow publication of misleading failures to replicate.

    abstract::In recent years, the field of psychology has begun to conduct replication tests on a large scale. Here, we show that "replicator degrees of freedom" make it far too easy to obtain and publish false-negative replication results, even while appearing to adhere to strict methodological standards. Specifically, using data...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1910951116

    authors: Bryan CJ,Yeager DS,O'Brien JM

    更新日期:2019-12-17 00:00:00

  • Use of recombinant DNA technology to program eukaryotic cells to synthesize rat proinsulin: a rapid expression assay for cloned genes.

    abstract::To use recombinant DNA technology to functionally analyze mutations introduced into cloned eukaryotic genes, a rapid procedure is necessary to assay the steps along the gene expression pathway. Since cloned rat insulin genes are not transcribed efficiently after transfection into various cell lines, I have asked wheth...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.79.19.5798

    authors: Lomedico PT

    更新日期:1982-10-01 00:00:00

  • Direct effects of 17 beta-estradiol on trabecular bone in ovariectomized rats.

    abstract::High-affinity nuclear binding sites for 17 beta-estradiol (17 beta E2) were recently found in bone cells; however, the mechanism by which estrogen exerts its effect on bone in vivo is still unknown. To study if estrogen acts on bone directly, we used an experimental model in which test substances are infused locally i...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.87.6.2172

    authors: Takano-Yamamoto T,Rodan GA

    更新日期:1990-03-01 00:00:00

  • Tying synaptonemal complex initiation to the formation and programmed repair of DNA double-strand breaks.

    abstract::During meiosis, homologous chromosomes recombine and become closely apposed along their lengths within the synaptonemal complex (SC). In part because Spo11 is required both to make the double-strand breaks (DSBs) that initiate recombination and to promote normal SC formation in many organisms, it is clear that these t...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0400843101

    authors: Henderson KA,Keeney S

    更新日期:2004-03-30 00:00:00

  • Conduction-band-edge ionization thresholds of DNA components in aqueous solution.

    abstract::Numerous investigations have focused on DNA damage induced by ionizing radiation; however, photoionization threshold energies of nucleic acid components in aqueous solution are not known. Herein, data from gas-phase photoelectron experiments have been combined with results from self-consistent field and post-self-cons...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.95.10.5550

    authors: Fernando H,Papadantonakis GA,Kim NS,LeBreton PR

    更新日期:1998-05-12 00:00:00

  • Activation of the inducible form of nitric oxide synthase in the brains of patients with multiple sclerosis.

    abstract::Nitric oxide (NO) has been implicated as a pathogenic mediator in a variety of central nervous system (CNS) disease states, including the animal model of multiple sclerosis (MS) and experimental allergic encephalomyelitis. We have examined post-mortem brain tissues collected from patients previously diagnosed with MS,...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.92.26.12041

    authors: Bagasra O,Michaels FH,Zheng YM,Bobroski LE,Spitsin SV,Fu ZF,Tawadros R,Koprowski H

    更新日期:1995-12-19 00:00:00

  • Lipocalin-type prostaglandin D synthase/beta-trace is a major amyloid beta-chaperone in human cerebrospinal fluid.

    abstract::The conformational change in amyloid beta (Abeta) peptide from its monomeric form to aggregates is crucial in the pathogenesis of Alzheimer's disease (AD). In the healthy brain, some unidentified chaperones appear to prevent the aggregation of Abeta. Here we reported that lipocalin-type prostaglandin D synthase (L-PGD...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0701585104

    authors: Kanekiyo T,Ban T,Aritake K,Huang ZL,Qu WM,Okazaki I,Mohri I,Murayama S,Ozono K,Taniike M,Goto Y,Urade Y

    更新日期:2007-04-10 00:00:00

  • N-ethylmaleimide-sensitive factor is required for the synaptic incorporation and removal of AMPA receptors during cerebellar long-term depression.

    abstract::Cerebellar long-term depression (LTD) is a persistent attenuation of synaptic transmission at the parallel fiber-Purkinje cell synapse mediated by the removal of GluR2 subunit-containing alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid (AMPA) receptors. The removal of AMPA receptors requires protein kinase C p...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0408278102

    authors: Steinberg JP,Huganir RL,Linden DJ

    更新日期:2004-12-28 00:00:00

  • BC200 RNA: a neural RNA polymerase III product encoded by a monomeric Alu element.

    abstract::We demonstrate that the BC200 RNA gene, which encodes a neural small cytoplasmic RNA, is a member of the most prodigious family of interspersed repetitive DNA and that its product represents an example of a primate tissue-specific RNA polymerase III transcript. The BC200 RNA gene is an early monomeric member and one o...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.90.24.11563

    authors: Martignetti JA,Brosius J

    更新日期:1993-12-15 00:00:00

  • Involvement of cytochrome P450 in oxime production in glucosinolate biosynthesis as demonstrated by an in vitro microsomal enzyme system isolated from jasmonic acid-induced seedlings of Sinapis alba L.

    abstract::An in vitro enzyme system for the conversion of amino acid to oxime in the biosynthesis of glucosinolates has been established by the combined use of an improved isolation medium and jasmonic acid-induced etiolated seedlings of Sinapis alba L. An 8-fold induction of de novo biosynthesis of the L-tyrosine-derived p-hyd...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.92.26.12505

    authors: Du L,Lykkesfeldt J,Olsen CE,Halkier BA

    更新日期:1995-12-19 00:00:00

  • Quantification of protein half-lives in the budding yeast proteome.

    abstract::A complete description of protein metabolism requires knowledge of the rates of protein production and destruction within cells. Using an epitope-tagged strain collection, we measured the half-life of >3,750 proteins in the yeast proteome after inhibition of translation. By integrating our data with previous measureme...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0605420103

    authors: Belle A,Tanay A,Bitincka L,Shamir R,O'Shea EK

    更新日期:2006-08-29 00:00:00

  • Presenilin mutations linked to familial Alzheimer's disease cause an imbalance in phosphatidylinositol 4,5-bisphosphate metabolism.

    abstract::Phosphatidylinositol 4,5-bisphosphate (PIP2) is an important cellular effector whose functions include the regulation of ion channels and membrane trafficking. Aberrant PIP2 metabolism has also been implicated in a variety of human disease states, e.g., cancer and diabetes. Here we report that familial Alzheimer's dis...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0604954103

    authors: Landman N,Jeong SY,Shin SY,Voronov SV,Serban G,Kang MS,Park MK,Di Paolo G,Chung S,Kim TW

    更新日期:2006-12-19 00:00:00

  • X-linked H3K27me3 demethylase Utx is required for embryonic development in a sex-specific manner.

    abstract::Embryogenesis requires the timely and coordinated activation of developmental regulators. It has been suggested that the recently discovered class of histone demethylases (UTX and JMJD3) that specifically target the repressive H3K27me3 modification play an important role in the activation of "bivalent" genes in respon...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1210787109

    authors: Welstead GG,Creyghton MP,Bilodeau S,Cheng AW,Markoulaki S,Young RA,Jaenisch R

    更新日期:2012-08-07 00:00:00